LOC110532855 (LOC106562987)


Basic Information

Item Value
gene id LOC110532855
gene name LOC106562987
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86353680 ~ 86402164 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987786.1
CCGTGTAATGTCCTCCCTATCCGGCGAGATAAGCCCGGGGTTCCCGAACGAATCGTTGTGATGGTCATCTTCAGTATTCTTCAAAACCACCAGAGACAAAAGGGGAAGAAAAAAACACAACGTATTGATCAGTTGACAGAAGGAAGGATGAAGGCAGACCAGGAagctcctcccccctcccccggaTTGGAGGATTTGGCGATCCGGTGTCGGGAAGTGTGTCGGTCGTACGGGAAACTCAAAGTCCTGAGTAACCTCAACTTGACCGTACCACAGGGACACATCTACGGCCTGCTGGGTCCGAGTGGATGTGGGAAGACCACGCTGTTGAAATGCATTCTGGGAACCCTGAAGATCTCCCGAGGGCACATCAGCGTGTTGGGGAAGCCGCCCGCATTTCCTGGACACCAGGTCCCTGGGAGGATGGTGGGGTACATGCCACAGGACCTGGCGTTGTACAATGAGTTTTCTATCAGTGACACTCTGACATTCTTCGGAAGGATCCACGGCCTGTCATCTACAGACACCCAGGCACGCATGGACTTCCTGGTGGACTTCCTGGACCTACCTCACAACAGCAGCCTGGTTGGAAAACTCAGcggAGGGCAGAAACGGAGGGTGTCTCTAGGAGCGGCCTTACTTCAGAACCCCCAGTTATTGATTCTGGATGAACCCACAGTCGGGGTGGACCCTGTGCTGAGAGCCAAGATCTGGCAGCATCTAGTAGAGATTGTGAAAACTGGAAAAGTATCAGTCGTCATCACCACTCACTACATAGAGGAGGCCAGGCAAGCCAACGTGGTGGGTCTGATGAGGAATGGCCGAATGCTGGCAGAGGGGGAACCAGAAACCTTGATGAAACAGAACAGTGCTGTGACCCTGGAGAAAGCCTTCCTGCAGCTGTGTGAGACCTCAGACCAGGTGGGCTCCAAACACAGCACCTACCCTCAGGGTGGGGTACTAGAGAGCGGCCAATCACTCGAAAGCGGCCGGGAAGAGATTCAATTAATCCTGGGAGTCGGGTCGGGACCAGTTGAAGAGCTGCCCAAATACTCAGcggacTGGAAGGTACGAGTCAGGCATGTGATGCCAAAGTGGAGGAACATCGCAGCTCTGATTATCAAGACCACGGTGCGGATGAAGAGAATGCCTggGTCCCTGTTTTTCCAGTTCCTTCTGCCAGTCATGCAGATCTCTCTGATGTGTCTGTGTATCGGAGGAGACCCCAAAGGAATACAGGTGGCTGTGGTCAACAATGATACCTCCTCCAGCTCCTATAGCCAATCCCTGCTCTCCTTCCTGGACAACTCCAGCGTGCAACAGGTTAACCTGTCACATGCTGAGGCTTTTGCAGGGGCCTATAATGGAGAGTACTGGGCCGTCATCGGGTTTGGAAAGAATTTTACCAGCTACCTGACCAAGAGGATGATCCAGCGGCAGGTCTCTAAGGAGGTGGTGGATGGAGGGTCGGTGCACGTCTGGTTGGACCTGACCAATCGACAGATCGCCTTAATGCTTCAGAAAAAAATGAAAGATGCCTTTGAGGGTTTTATCCAGTATAAGATGAGTAGCAGGTCTTAcctgctctctcttcctgtcaAGTTTGAGGAGCCCATCTATGGCAGCATGAACTCAGACTTCACCACGTTTGTGACGCCAGGAGCCGTTCTGAGcATCACTTTCTACCTGGCAGTGGGCTTGACGGCTCTGTCCTTTGtgatagagaggaaggaggggctAATGGAAAGGTGCTGGGTCTCAGgTGTGAGTTCAATGGAGACCGTGCTGGCGTATCTCATCTCCCAGCTGATTATCATCAGTGTCCAGATAATTCTACTACTGATCTTAATGCTGCTTGTCTttaagatCCCTAATGAGGGGAACCTGGTGTTGGTTATAGCTCTGATCGTGCTGCAGGGTATAACAGGCACTTCCTTTGGTCTGGTCATCTCATCCGCCATCGATGACGAACAGAACGCCACCCAAGCTGCCCTTGGTATCTTCTACCCCAACCTCATCGTCAGTGgtATAATCTGGCCTGTGGAGTGCATCCCCTATCCACTACGTTACATCAGTCTGGCCCTGCCCCAGACCTACGCTTCTGAAGCCCTACGATGCATCATGTACAGagGCTGGGGTCTCTCCAGGATGATAGTGTGGCGAGGCTTTGTTGTCACCCTGGGCTGGAACACTTTCTTCGTCATCCTGGCCATCGTCATCCTCAAGCTGAGGATGTGAGACACCTGCCCAGGGAAAATGTGTGCTTATGTAGTGTATGTGAGTGCGTGAGGGTTTTGTGTGGGAGTGTCAatatggtgtgtgtatatatagtctagtgagtgtgtatatatagtctagtgagtgtgtatatggtgtgtgtatatatagtctagtgagtgtgtatatggtgtgtgtatatatagtctagtgagtgtgtgtagggtcagtgcagatagggTAGCTTTCCCCCTCAGTCACGTTAGTTTGGCTACTCAACCTATCTATTTGTCACTCACAAACCAATCAAAATGCCTGAAATGTGCGTCTGGACACTGCACCCACCCACTCAGGTGTTACGAGTGTAATCACCGTCAGGAGAGTGATCATCGTCTGAGGACTGTTATGGACAATAACATGAATGGGTGTGATACGTTTACAGCAGGATTCTACTGTCCTGCCGCTATAAGTCTGTAATGTTAGTGTGTTTTCCCGACACTGCTTTGCATATTGTTGATAGTTAATTGCCATTATTGCATTGGTTGCACAGGTGTTTTATGGAGGAGATTTGTTGTACTGGTAACACAAGGCGGGAATTGTTAAAAGTTAAGAAGGGTATTTTTTGTCAAAGCAGCTGTTAAGGGTCAGAGTTATGCGTAGCCTCATTAGACGGACTTTCAAACGCACAACTAGGTTGCCTGGCAACTCAAACTGAATCATTCCGCTGCTCGATGTTCGCTACATACTTCATTGCGCAGAAGGAACCAACGTCCGTGGGCATGGCGTAGCTTTTGGCCAGAGAAAGGATTTTGGCCCATATATGTCATGTCTTTCTAGAATGCCCTTTTAAGAAATATTCATTGGGAAAATGTTTGGTCTCTTTCTCAGAAGTTTATTTTAACTAATAATATTAAAGAAGTTTAATATAAATTAATCCACAAGTGCTGCCCTACTAAACATGATCTtgaagttttaaaaaatacattgatGTTTCTTGTACCTTCTGTAATGACCAACATTACCTTCTGTAATGACAAACATTACCTTCTGTAATGACCAACATTACCTTCTGTGATGATCAACATTACCTTCTGTGATGATCAACATTACCTTCTGTAATGACCTACCTTCTGTAATGACAAACATTACCTTCTGTAATGACAAACATTACCTTCTGTAATGACCAACATTACCTTCTGTGATGATCAACATTACCTTCTGTAATGACCAACATTACCTTCTGTAATGACCTACCTTCTGTAATGACTAACATTACCTTCTGTAATGACAAACATTACCTTCTGTAATGACCAACATTACCTTCTGTAATGACAAACATTACCTTCTGTAATGACCAACATTACCTTCTGTGATGATCAACATTACCTTCTGTAATGACCTACCTTCTGTAATGACAAACATTACCTTCTGTAATGACAAACATTACCTTCTGTAATGACCAACATTACCTTCTGTGATGATCAACATTACCTTCTGTAATGACCAACATTACCTTCTGTAATGACCTACCTTCTGTAATGACTAACATTACCTTCTGTAATGACCAACATTACCTTCTGTAATGACCAACATTACCTTCTGTGATGACCAACATTACCTTCTGTGATGACCAACATTACCTCCTGTAATGACCAACAGGAGACTGCTTCACATTTAGTTTGGTATTGCTCTTATACCAGGAAGCTGTGGCAAGATATCTGGAGATTGTTTTCGATCATAAACATTTTCCCTTCTACTTGAAAATGTGATATTTGGTTTTAAAAGTATAGCAAATTAGTTCTTCTTAAATCAACCTCATTGGTATTTTATCTCAATTCCATATTCATAAATGTAAATTACAAAAACCTCTTTACTATTTTTGGAATGAAATTGAACAATAAATAAAGAACATTTCTTCTTCTGATAACAAAACCAACCAAAAGGTTGAATGTAGTAATAAGGTGTTGACATAATGTATGGGCTGCATTACCCTGAATGTTTGTTATGTTTAGATACTCTGTTGTGTACTCTGTTTGTTATGTTTGGATACTCTGTTGTGtactctgtttgtttttctatatgTGGTATTTTTTTAACAATAAAATTAAAAAGACAACTAGGCA

Function

NR:

description
ABC transporter G family member 23-like, partial

GO: NA

KEGG:

id description
K25167 ABCH1; ATP-binding cassette, subfamily H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987786.1 True 4340 mRNA 0.45 20 86353680 86402164

Neighbor

gene id symbol gene type direction distance location
LOC110531245 LOC106562987 coding downstream 3910 86299040 ~ 86349770 (-)
LOC110531234 LOC106563028 coding downstream 66163 86235239 ~ 86287517 (-)
LOC110513354 LOC106569852 coding downstream 129728 86222196 ~ 86223952 (-)
LOC110531925 adgrb3 coding downstream 306504 85891577 ~ 86047176 (-)
LOC118964521 NA coding downstream 721521 85630601 ~ 85632159 (-)
LOC118966040 LOC106592896 coding upstream 200158 86602322 ~ 86650167 (-)
LOC118936335 LOC106592896 coding upstream 261351 86663515 ~ 86698225 (-)
LOC118966041 NA coding upstream 328767 86730919 ~ 86732537 (-)
LOC110518258 LOC105008825 coding upstream 381660 86783824 ~ 86864120 (-)
LOC118966043 NA coding upstream 524275 86926439 ~ 86954561 (-)
G97163 NA non-coding downstream 8304 86344207 ~ 86345376 (-)
G97161 NA non-coding downstream 12910 86340306 ~ 86340770 (-)
G97156 NA non-coding downstream 25673 86326220 ~ 86328007 (-)
G97141 NA non-coding downstream 79410 86267122 ~ 86274270 (-)
G97138 NA non-coding downstream 87875 86263943 ~ 86265805 (-)
G97178 NA non-coding upstream 14967 86417131 ~ 86417964 (-)
G97191 NA non-coding upstream 17601 86419765 ~ 86420017 (-)
G97208 NA non-coding upstream 50436 86452600 ~ 86502883 (-)
G97224 NA non-coding upstream 63928 86466092 ~ 86538953 (-)
G97227 NA non-coding upstream 79943 86482107 ~ 86596907 (-)
G97047 LOC106577388 other downstream 202341 86146009 ~ 86153321 (-)
G96002 NA other downstream 1001914 85346858 ~ 85351766 (-)
LOC110510598 LOC106594326 other downstream 1093148 85247338 ~ 85299641 (-)
LOC110510599 LOC106613623 other downstream 1128530 85213382 ~ 85244441 (-)
G95784 NA other downstream 1194367 85157742 ~ 85159313 (-)
G97251 NA other upstream 164313 86566477 ~ 86623311 (-)
G97308 NA other upstream 384893 86787057 ~ 86788052 (-)
G97535 NA other upstream 892193 87294357 ~ 87294999 (-)
LOC110531505 LOC106597820 other upstream 1511138 87911053 ~ 87919678 (-)
pex13 LOC106592834 other upstream 1661298 88054545 ~ 88065123 (-)

Expression


Co-expression Network