XLOC_019827 (cpeb4b)


Basic Information

Item Value
gene id XLOC_019827
gene name cpeb4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 41310551 ~ 41369539 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039014
ATTTGGCTTCAGTAGATTGTGCCGTGAAGAGGAGAAGAAGGACAGCAACGGCAGCGCAGCGAAGGGAGCAGCAGTGCGCTGGTGAAAAAAAAGACAGCgaaaggaaaaaaataacaatgaaaagGACGCACGAACGCTTTGCAGTTCACCAGTAACTAAACTAGTCTTTTTAAATTGAAGTCAATGACGTAGAATCGTCTACGCAAGTGCTTTAAAGGTTAGCAGCTGGCTAAAGCGAGACAGGGCTGTGTCATTGAGAAGGCAGGACACGTCAAGACGAGGAAGGGAGAAAAAATTAGACACTGCTGTCGGATTAAAGATCCCCACTCCATAATATCAGATCACCAGTCTATTCGAGCTTCTGCGTTAGTTTGCGTGGTGGTAATATCTGGAACGAGTGTCTGCCCTCAGTCATCGCTCGGATCAGCTACTAAGGGCATAGGAAGCAAGAATAACTGTTGGGACCAAGTTAAACTGGAGAACATAAATGGGGGATTACGGGTTTGGAGTCTTAGTGCAGAACAACACTGGCAACAAGTCTGCTTTCCCAGTTCGAATCCACCCTCACCTGCAACCGCCACATCACCACCCCAATGCAACCGCCAGCCCCGCCGCTTTCATAAACAGCACCCCGGCTGGGAATGGCAGCAGCAGCGCTTCGACCTGGCTGTTCCCGGCAGCTGGAGGCCACAACAACATGCAAGATGAAATTTTGGGCTCGGATAAACCCAAAGTACAGCAGCAGGAGCTGCAGGAGACCCAAGacaaacagcagcagcagcagctctcgCCTGGACATCAGGAGAGCACCATCATCTCTGAACTGGAAAAGGCTCGTGCCGAAGAAGGTAAGGTGGAGAGTGGGTCGTCTGAAGGGACCAATGGCAAAGAGAAGCTGCGTTTGGAGTCGCCAGTGCTGACAGCCTTTGACTATCAGGAGCCCTCGGGACTGGGCACAGCAGCCCAGTCCAGCACCTCCTCCTCCCTGACCAGCTTCAACAACTGGTCGGCTGCTATTCCCGCCACCCCCTCCACCATTATCAACGAGGACATCAGCTTCTTCAACCCGGCCGCCTCGGCCAACAACGGCCCTCTTCTGTTCCAGAACTTCTCCCATCACGTCAGCCCAGGCTTCGGTGGCAACTTCTCCCCTCAGATTGGTCCCATCTCCCAGCACCACCCACCCCACCCCCACTTCCAGCACCCTCACAGTCAGCACCAGCAGCATCGTCGTTCTCCTGCCAGTCCTCATCCACCACCGTTCCCCCACCGCAGCGCCCCCTTTGGCCAGCTGCCGCATCTCTCCAACAACCTGAGCAAGCCTCCCTCACCATGGGGCAGCTACCAGAGCCCCTCGCCCTCTCCTTCTTCAACATCCTGGAGCCCAGGTGGGGGTTATGGTGGTTGGGGCGGCTCTCAGGGCCGCGAGTACCGCCGAGGCTTGAACGGGGGCATGACACCACTCAACTCCATCTCTCCACTCAAGAAGACCTTTCCAAACAACCACATGCCCCAGCAGAAATACTCCCGCGCCAGTCCCGGCTTTAATCCTAAATCCTGGATGGATGACAGGAGCGAGAACATCTTCCCATTCCAGGATCGTCCCCGCTCATTCGATGGCTTCAACATGCATTCTCTGGAGAACTCTCTGATTGACATCATGAGGGCTGAGCAAGACACTCTGAAAGGTCGCCTCGGATTCACCCATCCAGGAGGAGACAGCCCCTTGCCCATAAATGCAAGGAATTATGGGAGGCGACGAGGACACTCTTCTCTGTTCCCGATGGAAGATGGCTTCCCGGATGAAGAGCGGGCCGATCAGAGCCTGCCAGGCCTCAGTTCCCCTCACTGCTTCCCACACCAGAATGGAGAGCGGGTGGAGCGCTACTCTCGCAAAGTCTTTGTGGGTGGCCTTCCTCCTGACATCGATGAAGATGAGATAACTGCTAGTTTTCGCCGCTTTGGACACCTGTTTGTGGATTGGCCTCACAAAGCAGAGAGCAAGTCATACTTCCCCCCGAAAGGCTACGCTTTCCTCTTGTTTCAAGATGAGAGCTCCGTTCAAGCCCTTATCGATGCCTGTATTGAAGAGGACGGAAAACTCTACTTGTGTGTTTCCAGCCCCACCATCAAAGACAAACCTGTCCAAATTCGCCCATGGAATCTTAACGATAGTGACTTTGTGATGGATGGATCACAGCCGCTGGACCCCAGGAAGACCATATTTGTGGGTGGAGTGCCACGTCCACTGCGTGCAGTGGAGCTGGCGATGATCATGGACAGGCTGTATGGCGGTGTGTGCTACGCAGGCATCGACACAGACCCAGAGCTGAAGTACCCCAAGGGCGCAGGGCGGGTCGCCTTCTCTAATCAGCAGAGCTACATTGCTGCTATCAGTGCTCGTTTTGTACAACTGCAGCATGGAGAAATCGATAAACGGGTGGAAGTGAAGCCATACGTCCTGGATGACCAGCTGTGTGATGAATGTCAGGGGACTCGCTGCGGAGGCAAGTTTGCTCCTTTCTTCTGCGCTAACGTGACCTGTCTCCAGTATTACTGTGAATATTGCTGGGCGGCGATCCACTCGCGCGCCGGCCGGGAGTTCCACAAGCCCCTGGTGAAGGAAGGCGGCGACAGACCTCGTCACATCTCCTTCCGCTGGAACTAAAGCCGGCGGGACGGGAGGAGAAGAGCGGGAACGAGCAGGAGACGGGAGGAGCGTAGCCTAGGAGGAGTCGCAAAATCATCATCTAAATAAATGCACTTTTCTGTTGCTGGTtcctttttagtttaatttaagaagaagaaaaaaaagacaaacgacaaaaaaatggattttaatttgtcatttaatatatatgaaaaaaaagaagattcaggaagaaaaagaaaatgtctAATCCATCTctctatttttttataactccattctatttaatttttaagtGCACAGAGATGTGAATATATTGAGTATTAGTATAATTTGTCAGTAGGTATCTGCATGACTTTAGAATTGGCTTTGTTTTCGTTTAACCTTGCGATTTGGGAAGTATTACGTCCTATTTTAATTTAACGGAAAAGGCGAAGGAGCAAACGCGAATAGAGAGAAAAGGTGCGGGAAGAGTGCACTTATTTCTTTACAGATGTGTGGTTTAAGATCTCAGTTGTTAACCAAAGCTTGGGATTTAACGAAAACAGATGAAGCGAATTCTCTCGACGCTCTGTTTTTATTTCGTGCGTGTGTATACTTTAAGACCATGCTAATCTTTAATGTTGACAACAACTGATTCCACAACAGCTGTCTGGATTTGATCTCCATGCAAGAAAACTAATACCTCAAGCTTAGCTGCTAGTTTAAGtcgaatatatatttaaaaacgacaaaaaaaaaaatcaagctggtCTAACCCGTTCCCCTCAGGACGGCAGAAAAAAAAGGAAGTGACATCAGCAAACAGCACATTGAGAAAACCTGCTCTGTCGCTTCCTGATTAGAATTGGAGATTCAGCATCCTCGTGGGGAATGTACGTTGGTAAAGTTGCAGTAGTCTGCCTGCAAAGCTGGTTCGAACGCGAGGAACTTGATTTCGTTTCTGGTCCTGCTTAGCGTCCGCGTTCTTTCAGGCTGTTAGCGGCAAGCCTtcgttttttaattttgttttgttttagcaaTATGTCTCGCCTTTCCCCAGAAGCCCCCCTCAAAAAGAGGTGTACGTACGAGCAGAACAGCTACTTGAAAGGGAGGAAGACAATGAAGCTCCTGTACTGCAGCCGCAGTGTTGAAGTGTGAAGCATAACTGAAGGTAGTCCATGCATCTCTCCTCCCCCCAACACTCACTTTCAGACATTAGGGAACCAAAGATGGCTGTTTTGGTAGCTAGTAAAACCATGGACGTTTGCAGATTTAATTTTGCCCCCCCTTCGCCCAACCCCCAGTCCATCCCATTCGATATATAAAGACCAGACGGGCTCCAGCAAACCAAAGATTGGCCTTGAATCCATCAGTCCTAGTAACACTAGTGAAAACCCTCAAACGAAGAACACGCGCATAATTCGTCAGGTAACGGCCAATTCTCGGAAAACCGATTAGCGCTAACGTCAGGGAGTCAGTGATCAGTTGATACACTAGTGAGAAACTGCGTCACTCGAGCTGGTGGTGGTCGAACGTTTTCAAAGCGAAACACTTTTTGAAGAATTTGCTGTTAACGCGAAacgaaaaacgaaaaaaaaaaaagattattttataCATGGCCTGCTGATTTTTTGGTACAGTGTTTTCTAGCTAAATTATTTTGTCATGcacatataaacatttattatgcaCTACTTTtctaaatacgttttttttttcgaCAGTCATTTTAGGCACATTTTTCAcgaaacggaaaaaaaaaactcctttttGCAATACCTCAATTTTTCACATTGTGAAAGGTAGCTTTTGTACTTTTGTTACTGAGAGATCTGCATATATGGAAACTTTCATTTGAAGAGAAAAGTGAATTTAATATATCTTATTTTCAATTATGCTTTTTATACATTTCAGTGCTGAGGAATCTTTACAGCTAAAGCAGCACGCACTTGTGTTGACGCGACAAATCTGCAGAGGAGAGAGAGCGCTCTTGTACACTAGATTTCAATTGGGAAAAAAATGATCTGACAGCAGCATGGTAAGAACAACGTTGTCGTTCATGTTAAGCAAAAGCTCGTCTTTTTGGTTTCCTCTCTCCATAGCTGGAACTTAAACTATAATATAAGGAGAATGCTAAATCCGGTCAGTTCACGAGAATGGATGTTTGATGTTTAGATATTTTaacatttgaaaataaacatatatacatatatatatattcttgaacTGCCAACTAGTTCCTATTGTAACCCTTAGCATGCATGATGAGAagagaaaataagaaaaaaaaaaacgtacatgaATTAGCTCTTGAAATTAATCGTTGTGGTTGTGCACCAGATGTTTCTAAAGCTTTGATTTGAGGCCACCCCCACTACCTTGTTATTATTCTCTATGCCTTTCCCCGTAATCCAGTATCGATAGGATGCACAGAGGAaaaatacagatatatatatatatagatatacataaGAAAACAACTATTTGCAGTGCAGGACGAACGCATCTTCTTTAGTACGCTGTGTCGAAAAGACTTGAGAACTTCATCCCCACTGTCTGTTTGAAGTAAATCCAAACCCGTTTGGAGGAAGGGGAACTTAAGACTTGAATGTGGTAAATATGTTGCAAGTTAACGTCGAGTTGTTATGTGCAATACtttttttgaactttttttccagataaaaaaaagaaaaaacaagactcTTTGCAATGTAATTCTTTAATGCCATTTTTAATTGCCGACATTTAAAGAAGATGTTAATATGTTTTTCACAGTCATTTTCTACTGTTATTGTAATCCTTTTCATGCTGGTGTTTGTAAAAAAGAAACGGATAAAAAAAAACCCCGAAATCAACCTATTTGTACTAATATAAATGATCgaagttatttttaaaacattaaaggttTTGTGCTCATTTTGCTTATTTTGTTTCTTTGGAGCTACTGTGATTGATCGCATTGTAATTATTAGGTCAACGATGTATCTAGCTGTTTATCGGTCTATTTTTAATTGGAatgtataattaatttttataattttgatcagatttttgttatatttttgagGTGAAGCTTTTAATATGTTAAAGTGTCTAGTTTTTACTAATTGCTATATTGTGCTCCACAATATATGGTTCACATTttctgaaggaaaataaatatttaaatatctgtCTGTTAACGATGTTACTTAATGGCGAAAATTTCAATAGTTTTTAACTGTGTATGGGAAGGTTGTCGTATTTATTAATAGCATTTTTTTACTTAAGATATCACCttaatttttattgtcatttcactTTATAAGTTCctatttttgtattttgctttCTAATTAAGTTATGTTATACGAAATGTTCATATTCTAGGAGTTGGTCTGTAAGTGCTAGTGAAACGAAAAGAAAAATctaatgttatttaattgtttgcagCCAACTATTTATAACAATatgcataatttttaaatatttgtaatgtgAAATGTTGAATGAATAAAACTTAACTGTGACAA
>TCONS_00039015
TCCAAATTAGGACGAAGTGGGCGGGTGCAACAAGCGCTGGGACCAATTGCATGCCGTGTGCTCAGCCAGCGTGGGCGGAGCAGCCGCCTTGTGAGGTTCCCGTGGGCGTGGTCTGACGTAAGGAGGCGGGGGTTTAACCGGAAGTGTGTGTGGACTGGGTCTCCTTGTCATTTGGCTTCAGTAGATTGTGCCGTGAAGAGGAGAAGAAGGACAGCAACGGCAGCGCAGCGAAGGGAGCAGCAGTGCGCTGGTGAAAAAAAAGACAGCgaaaggaaaaaaataacaatgaaaagGACGCACGAACGCTTTGCAGTTCACCAGTAACTAAACTAGTCTTTTTAAATTGAAGTCAATGACGTAGAATCGTCTACGCAAGTGCTTTAAAGGTTAGCAGCTGGCTAAAGCGAGACAGGGCTGTGTCATTGAGAAGGCAGGACACGTCAAGACGAGGAAGGGAGAAAAAATTAGACACTGCTGTCGGATTAAAGATCCCCACTCCATAATATCAGATCACCAGTCTATTCGAGCTTCTGCGTTAGTTTGCGTGGTGGTAATATCTGGAACGAGTGTCTGCCCTCAGTCATCGCTCGGATCAGCTACTAAGGGCATAGGAAGCAAGAATAACTGTTGGGACCAAGTTAAACTGGAGAACATAAATGGGGGATTACGGGTTTGGAGTCTTAGTGCAGAACAACACTGGCAACAAGTCTGCTTTCCCAGTTCGAATCCACCCTCACCTGCAACCGCCACATCACCACCCCAATGCAACCGCCAGCCCCGCCGCTTTCATAAACAGCACCCCGGCTGGGAATGGCAGCAGCAGCGCTTCGACCTGGCTGTTCCCGGCAGCTGGAGGCCACAACAACATGCAAGATGAAATTTTGGGCTCGGATAAACCCAAAGTACAGCAGCAGGAGCTGCAGGAGACCCAAGacaaacagcagcagcagcagctctcgCCTGGACATCAGGAGAGCACCATCATCTCTGAACTGGAAAAGGCTCGTGCCGAAGAAGGTAAGGTGGAGAGTGGGTCGTCTGAAGGGACCAATGGCAAAGAGAAGCTGCGTTTGGAGTCGCCAGTGCTGACAGCCTTTGACTATCAGGAGCCCTCGGGACTGGGCACAGCAGCCCAGTCCAGCACCTCCTCCTCCCTGACCAGCTTCAACAACTGGTCGGCTGCTATTCCCGCCACCCCCTCCACCATTATCAACGAGGACATCAGCTTCTTCAACCCGGCCGCCTCGGCCAACAACGGCCCTCTTCTGTTCCAGAACTTCTCCCATCACGTCAGCCCAGGCTTCGGTGGCAACTTCTCCCCTCAGATTGGTCCCATCTCCCAGCACCACCCACCCCACCCCCACTTCCAGCACCCTCACAGTCAGCACCAGCAGCATCGTCGTTCTCCTGCCAGTCCTCATCCACCACCGTTCCCCCACCGCAGCGCCCCCTTTGGCCAGCTGCCGCATCTCTCCAACAACCTGAGCAAGCCTCCCTCACCATGGGGCAGCTACCAGAGCCCCTCGCCCTCTCCTTCTTCAACATCCTGGAGCCCAGGTGGGGGTTATGGTGGTTGGGGCGGCTCTCAGGGCCGCGAGTACCGCCGAGGCTTGAACGGGGGCATGACACCACTCAACTCCATCTCTCCACTCAAGAAGACCTTTCCAAACAACCACATGCCCCAGCAGAAATACTCCCGCGCCAGTCCCGGCTTTAATCCTAAATCCTGGATGGATGACAGGAGCGAGAACATCTTCCCATTCCAGGATCGTCCCCGCTCATTCGATGGCTTCAACATGCATTCTCTGGAGAACTCTCTGATTGACATCATGAGGGCTGAGCAAGACACTCTGAAAGGTCGCCTCGGATTCACCCATCCAGGAGGAGACAGCCCCTTGCCCATAAATGGACACTCTTCTCTGTTCCCGATGGAAGATGGCTTCCCGGATGAAGAGCGGGCCGATCAGAGCCTGCCAGGCCTCAGTTCCCCTCACTGCTTCCCACACCAGAATGGAGAGCGGGTGGAGCGCTACTCTCGCAAAGTCTTTGTGGGTGGCCTTCCTCCTGACATCGATGAAGATGAGATAACTGCTAGTTTTCGCCGCTTTGGACACCTGTTTGTGGATTGGCCTCACAAAGCAGAGAGCAAGTCATACTTCCCCCCGAAAGGCTACGCTTTCCTCTTGTTTCAAGATGAGAGCTCCGTTCAAGCCCTTATCGATGCCTGTATTGAAGAGGACGGAAAACTCTACTTGTGTGTTTCCAGCCCCACCATCAAAGACAAACCTGTCCAAATTCGCCCATGGAATCTTAACGATAGTGACTTTGTGATGGATGGATCACAGCCGCTGGACCCCAGGAAGACCATATTTGTGGGTGGAGTGCCACGTCCACTGCGTGCAGTGGAGCTGGCGATGATCATGGACAGGCTGTATGGCGGTGTGTGCTACGCAGGCATCGACACAGACCCAGAGCTGAAGTACCCCAAGGGCGCAGGGCGGGTCGCCTTCTCTAATCAGCAGAGCTACATTGCTGCTATCAGTGCTCGTTTTGTACAACTGCAGCATGGAGAAATCGATAAACGGGTGGAAGTGAAGCCATACGTCCTGGATGACCAGCTGTGTGATGAATGTCAGGGGACTCGCTGCGGAGGCAAGTTTGCTCCTTTCTTCTGCGCTAACGTGACCTGTCTCCAGTATTACTGTGAATATTGCTGGGCGGCGATCCACTCGCGCGCCGGCCGGGAGTTCCACAAGCCCCTGGTGAAGGAAGGCGGCGACAGACCTCGTCACATCTCCTTCCGCTGGAACTAA

Function

symbol description
cpeb4b Predicted to enable mRNA 3'-UTR binding activity and translation regulator activity. Predicted to act upstream of or within regulation of translation. Orthologous to human CPEB4 (cytoplasmic polyadenylation element binding protein 4).

GO:

id name namespace
GO:0006417 regulation of translation biological_process
GO:0045182 translation regulator activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-170601-167 Predicted to enable mRNA 3'-UTR binding activity and translation regulator activity. Predicted to act upstream of or within regulation of translation. Orthologous to human CPEB4 (cytoplasmic polyadenylation element binding protein 4).

Ensembl:

ensembl_id ENSDARG00000100499

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039014 False 6147 mRNA 0.44 11 41310551 41369370
TCONS_00039015 True 2813 mRNA 0.55 10 41314030 41369539

Neighbor

gene id symbol gene type direction distance location
XLOC_019826 nsg2 coding downstream 4803 41256771 ~ 41305748 (-)
XLOC_019825 CU570984.1 coding downstream 59003 41251431 ~ 41251548 (-)
XLOC_019824 msx2b coding downstream 162733 41144914 ~ 41147818 (-)
XLOC_019823 plac8l1 coding downstream 240369 41016729 ~ 41070182 (-)
XLOC_019822 yipf5 coding downstream 372169 40930177 ~ 40938382 (-)
XLOC_019829 bnip1b coding upstream 166415 41535954 ~ 41545995 (-)
XLOC_019830 crebrf coding upstream 188343 41557882 ~ 41588129 (-)
XLOC_019831 NA coding upstream 221331 41590870 ~ 41593163 (-)
XLOC_019832 pcyox1l coding upstream 228430 41597969 ~ 41624697 (-)
XLOC_019833 BX005397.1 coding upstream 244869 41614408 ~ 41617372 (-)
XLOC_019814 NA non-coding downstream 730744 40528787 ~ 40579807 (-)
XLOC_019802 NA non-coding downstream 1386107 39923770 ~ 39924444 (-)
XLOC_019801 NA non-coding downstream 1398444 39905903 ~ 39912107 (-)
XLOC_019794 NA non-coding downstream 1948375 39359151 ~ 39362176 (-)
XLOC_019838 NA non-coding upstream 674435 42043974 ~ 42048805 (-)
XLOC_019840 NA non-coding upstream 780821 42150360 ~ 42156252 (-)
XLOC_019849 NA non-coding upstream 1877168 43246707 ~ 43251824 (-)
XLOC_019850 NA non-coding upstream 1955742 43325281 ~ 43325892 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000040_03650283_03679583 CPEB4 coding CI01000040 null 3650206 ~ 3679762 (-)
bowfin (Amia calva) AMCG00011209 cpeb4,LOC106603870 misc CM030133.1 CM030133.1 14013121 ~ 14061027 (+)