LOC118966027 (LOC106592896)


Basic Information

Item Value
gene id LOC118966027
gene name LOC106592896
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86459068 ~ 86529078 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987829.1
TGTGCAGCGATGCAGTTGAACAGGTTCTTGTTCCaaggaagagaaagaagaaggaGGTAGTTTGATCACATCACAATAGTTTGATCACAGAACACTAGTACATTAATCAGACTGCAGTGCCTCAATAGGACCGATTCAACCAGGAATGAAGGTGACTCAACTagactgtctgtgtgtgattcTTCTACATCTCCTACACACAGCAGGCtctgAGAAGTTTGAGGTTCTTGGTCCAACTGATTCCATTGTTGCTGTAGCTGGTGATGACATCGTTCTGCCCTGTTACCTCAAACCCAACATCAGCGTTGAGGACATGACAGTGGACTGGCTTAACCTGGACATCATAGACGGTCGTGTCTTTCGTTACCAAAACAGCGAAATCATACGAGATGATCAGATTCCCTCCTATAGAGGAAGAACTTCACTGTTTGAAGAGGAACTATGGAGGGGCAACACCTCTTTGAAACTGACCAGGGTACAAGGCACTGATGAGGGACATTACAAATGCTTAATTCAGTCAAAGAGCTGGTATGATGATTTCACTGTTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCAATTGtgggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGAACAGTAAAGGAGTCCATCTCTCTGCTGGTCCTCCTGAGATACATAGAAGTTTCAAGGGATTCTACAGAGTCAAACGACATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGACAGATCAATgagaagatggagacagagattcACCTCCCTActGTAGGATCCAAGCCAGTGGTGTCCATtgagggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGAACAGTAAAGGAGTCCATCTCTCTGCTGGTCCTcctgagacacacagagacttcaATGGATTCTACAGAGTCAAACAATATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCAGGATCAATGAGAAAATGGAGACAGAGATTCACCTCCCTAGTGAGTTATTTTATACAACCCCATGGAGAATGGCCTTCATTGTGTTATGCTGTCTGGGAGCCATCACTGTGATTGGGTTAGCTCTGGCTATCTACTGCATATGTTATAAGAAAGATGATCTCAAGAAGGAAAGTGATGAACTCTGGGAGCAGAATCACAATAACAAGGAGAGGTTCTGTAAGTAGTGTCTTCAGATCATC
>XM_036987844.1
TGTGCAGCGATGCAGTTGAACAGGTTCTTGTTCCaaggaagagaaagaagaaggaGGTAGTTTGATCACATCACAATAGTTTGATCACAGAACACTAGTACATTAATCAGACTGCAGTGCCTCAATAGGACCGATTCAACCAGGAATGAAGGTGACTCAACTagactgtctgtgtgtgattcTTCTACATCTCCTACACACAGCAGGCtctgAGAAGTTTGAGGTTCTTGGTCCAACTGATTCCATTGTTGCTGTAGCTGGTGATGACATCGTTCTGCCCTGTTACCTCAAACCCAACATCAGCGTTGAGGACATGACAGTGGACTGGCTTAACCTGGACATCATAGACGGTCGTGTCTTTCGTTACCAAAACAGCGAAATCATACGAGATGATCAGATTCCCTCCTATAGAGGAAGAACTTCACTGTTTGAAGAGGAACTATGGAGGGGCAACACCTCTTTGAAACTGACCAGGGTACAAGGCACTGATGAGGGACATTACAAATGCTTAATTCAGTCAAAGAGCTGGTATGATGATTTCACTGTTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCAATTGtgggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGAACAGTAAAGGAGTCCATCTCTCTGCTGGTCCTCCTGAGATACATAGAAGTTTCAAGGGATTCTACAGAGTCAAACGACATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGACAGATCAATgagaagatggagacagagattcACCTCCCTAGTGAGTTATTTTATACAACCCCATGGAGAATGGCCTTCATTGTGTTATGCTGTCTGGGAGCCATCACTGTGATTGGGTTAGCTCTGGCTATCTACTGCATATGTTATAAGAAAGATGATCTCAAGAAGGAAAGTGATGAACTCTGGGAGCAGAATCACAATAACAAGGAGAGGTTCTGTAAGTAGTGTCTTCAGATCATCACTTTGATAACATTATTAGAACCACAAAAGTAAGAT
>XM_036987841.1
TGTGCAGCGATGCAGTTGAACAGGTTCTTGTTCCaaggaagagaaagaagaaggaGGTAGTTTGATCACATCACAATAGTTTGATCACAGAACACTAGTACATTAATCAGACTGCAGTGCCTCAATAGGACCGATTCAACCAGGAATGAAGGTGACTCAACTagactgtctgtgtgtgattcTTCTACATCTCCTACACACAGCAGGCtctgAGAAGTTTGAGGTTCTTGGTCCAACTGATTCCATTGTTGCTGTAGCTGGTGATGACATCGTTCTGCCCTGTTACCTCAAACCCAACATCAGCGTTGAGGACATGACAGTGGACTGGCTTAACCTGGACATCATAGACGGTCGTGTCTTTCGTTACCAAAACAGCGAAATCATACGAGATGATCAGATTCCCTCCTATAGAGGAAGAACTTCACTGTTTGAAGAGGAACTATGGAGGGGCAACACCTCTTTGAAACTGACCAGGGTACAAGGCACTGATGAGGGACATTACAAATGCTTAATTCAGTCAAAGAGCTGGTATGATGATTTCACTGTTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCCATtgagggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGAACAGTAAAGGAGTCCATCTCTCTGCTGGTCCTcctgagacacacagagacttcaATGGATTCTACAGAGTCAAACAATATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCAGGATCAATGAGAAAATGGAGACAGAGATTCACCTCCCTAGTGAGTTATTTTATACAACCCCATGGAGAATGGCCTTCATTGTGTTATGCTGTCTGGGAGCCATCACTGTGATTGGGTTAGCTCTGGCTATCTACTGCATATGTTATAAGAAAGATGATCTCAAGAAGGAAAGTGATGAACTCTGGGAGCAGAATCACAATAACAAGGAGAGGTTCTGTAAGTAGTGTCTTCAGATCATCACTTTGATAACATTATTAGAACCACAAAAGTAAGATT
>XM_036987826.1
TGTGCAGCGATGCAGTTGAACAGGTTCTTGTTCCaaggaagagaaagaagaaggaGGTAGTTTGATCACATCACAATAGTTTGATCACAGAACACTAGTACATTAATCAGACTGCAGTGCCTCAATAGGACCGATTCAACCAGGAATGAAGGTGACTCAACTagactgtctgtgtgtgattcTTCTACATCTCCTACACACAGCAGGCtctgAGAAGTTTGAGGTTCTTGGTCCAACTGATTCCATTGTTGCTGTAGCTGGTGATGACATCGTTCTGCCCTGTTACCTCAAACCCAACATCAGCGTTGAGGACATGACAGTGGACTGGCTTAACCTGGACATCATAGACGGTCGTGTCTTTCGTTACCAAAACAGCGAAATCATACGAGATGATCAGATTCCCTCCTATAGAGGAAGAACTTCACTGTTTGAAGAGGAACTATGGAGGGGCAACACCTCTTTGAAACTGACCAGGGTACAAGGCACTGATGAGGGACATTACAAATGCTTAATTCAGTCAAAGAGCTGGTATGATGATTTCACTGTTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCAATTGtgggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGAACAGTAAAGGAGTCCATCTCTCTGCTGGTCCTCCTGAGATACATAGAAGTTTCAAGGGATTCTACAGAGTCAAACGACATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGACAGATCAATgagaagatggagacagagattcACCTCCCTActGTAGGATCCAAGCCAGTGGTGTCCATtgagggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGAACAGTAAAGGAGTCCATCTCTCTGCTGGTCCTcctgagacacacagagacttcaATGGATTCTACAGAGTCAAACAATATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCAGGATCAATGAGAAAATGGAGACAGAGATTCACCTCCCTACTGTAGGATCCAAGCCAGTGGTGTCCATtgagggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGACCCTGAGCTGGTGTGGCTGGACAGTAAAGGAGTCCATCTCTCTGCTCGAACTcttgagacacacagagacttcaAGGGATTCTACAGAGTCAAACAACATGTCATTGTCCAGGAGACTGACACAAACCACTTTACCTGCAGAGTCCAACAGAAACGGATCAATgagaagatggagacagagattcACCTCCCTAGTGAGTTATTTGATCCAACCCCATGGAGAATGGCCTTCATTGTGTTATGCTGTCTGGGAGCCATCATTGGGATTGGGTTATCTCTGGCTATCTACTGCATATGTTATAAGAAAGGTAATGGAGAAATTATATGAACGTTTAATTGTTGGAATGAAATGTCTGC
>XM_036987835.1
TGTGCAGCGATGCAGTTGAACAGGTTCTTGTTCCaaggaagagaaagaagaaggaGGTAGTTTGATCACATCACAATAGTTTGATCACAGAACACTAGTACATTAATCAGACTGCAGTGCCTCAATAGGACCGATTCAACCAGGAATGAAGGTGACTCAACTagactgtctgtgtgtgattcTTCTACATCTCCTACACACAGCAGGCtctgAGAAGTTTGAGGTTCTTGGTCCAACTGATTCCATTGTTGCTGTAGCTGGTGATGACATCGTTCTGCCCTGTTACCTCAAACCCAACATCAGCGTTGAGGACATGACAGTGGACTGGCTTAACCTGGACATCATAGACGGTCGTGTCTTTCGTTACCAAAACAGCGAAATCATACGAGATGATCAGATTCCCTCCTATAGAGGAAGAACTTCACTGTTTGAAGAGGAACTATGGAGGGGCAACACCTCTTTGAAACTGACCAGGGTACAAGGCACTGATGAGGGACATTACAAATGCTTAATTCAGTCAAAGAGCTGGTATGATGATTTCACTGTTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCCATtgagggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGAACAGTAAAGGAGTCCATCTCTCTGCTGGTCCTcctgagacacacagagacttcaATGGATTCTACAGAGTCAAACAATATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCAGGATCAATGAGAAAATGGAGACAGAGATTCACCTCCCTACTGTAGGATCCAAGCCAGTGGTGTCCATtgagggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGACCCTGAGCTGGTGTGGCTGGACAGTAAAGGAGTCCATCTCTCTGCTCGAACTcttgagacacacagagacttcaAGGGATTCTACAGAGTCAAACAACATGTCATTGTCCAGGAGACTGACACAAACCACTTTACCTGCAGAGTCCAACAGAAACGGATCAATgagaagatggagacagagattcACCTCCCTAGTGAGTTATTTGATCCAACCCCATGGAGAATGGCCTTCATTGTGTTATGCTGTCTGGGAGCCATCATTGGGATTGGGTTATCTCTGGCTATCTACTGCATATGTTATAAGAAAGGTAATGGAGAAATTATATGAACGTTTAATTGTTGGAATGAAATGTCTGC
>XM_036987854.1
TGAGCTCACTATGCAACAGTTGTGTGCAGCGATGCAGTTGAACAGGTTCTTGTCCCAAGGAATAGAAAGAATAAGGAGGTAGTTTGATCACATCACAATAGTTTGATCACAGAACACTAGTACATTTATCAGACTGCAGTGCCTCAATAGGACCGATTCAACCAGGAATGAAGGTGACTCAACTAGACTGTCTATGTCTGATTCTTCTACATCTCCTACACACATCAGGCtctgAGAGGTTTGAGGTTCTTGGTCCAACTGATTCCATTGTTGCTGTAGCTGGTGATGACATCATTCTGCCCTGTTACCTCAaacccaacatcagtgctgaGGACATGACAGTGGACTGGCTGAACCTGGACTTCTTAGACGAACGTGTCTTTCGTTACCAAAACCACAGAATCATACGAGATGATCAGATTCCCTACTATAGAGGAAGAACTTCACTGTTTGAAGAGGAACTATGGAGGGGCAACACCTCTTTGAAACTGACCAGGGTACAAGGCACTGATGAGGGACATTACAAATGCTTAATTCAGTCAAAGAGCTGGTATGATGATTTCACTGTTCAAGTCCTCGTTAAAGCTGTAGGATCCAAGCCAGTGGTGTCCATtgagggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGACCCTGAGCTGGTGTGGCTGGACAGTAAAGGAGTCCATCTCTCTGCTCGAACTcttgagacacacagagacttcaAGGGATTCTACAGAGTCAAACAACATGTCATTGTCCAGGAGACTGACACAAACCACTTTACCTGCAGAGTCCAACAGAAACGGATCAATgagaagatggagacagagattcACCTCCCTAGTGAGTTATTTGATCCAACCCCATGGAGAATGGCCTTCATTGTGTTATGCTGTCTGGGAGCCATCATTGGGATTGGGTTATCTCTGGCTATCTACTGCATATGTTATAAGAAAGGTAATGGAGAAATTATATGAACGTTTAATTGTTGGAATGAAATGTCTGC
>TU106737
AAACTTACCACCACAGTTCACACCCATGTTATCAGATTCTGAGCTCACTATGCAACAGTTGTGTGCAGCGATGCAGTTGAACAGGTTCTTGTCCCAAGGAATAGAAAGAATAAGGAGGTAGTTTGATCACATCACAATAGTTTGATCACAGAACACTAGTACATTTATCAGACTGCAGTGCCTCAATAGGACCGATTCAACCAGGAATGAAGGTGACTCAACTAGACTGTCTATGTCTGATTCTTCTACATCTCCTACACACATCAGGCtctggtacagtagaatacatatTTAATATCTCACTGCCTTcaatacctctgtgtgtgtgatcaaTATCATCTCATTGTGTCTTTAGTCACTATTGTGGTCTTAAGGGTTCTACACAGTCTAATCAAACGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987829.1 False 1327 mRNA 0.47 9 86459068 86465100
XM_036987844.1 False 1081 mRNA 0.45 8 86459068 86465136
XM_036987841.1 False 1082 mRNA 0.45 8 86459068 86465137
XM_036987826.1 False 1572 mRNA 0.47 7 86459068 86529078
XM_036987835.1 False 1290 mRNA 0.47 6 86459068 86529078
XM_036987854.1 False 1030 mRNA 0.45 5 86517811 86529078
TU106737 True 400 lncRNA 0.38 2 86517772 86518315

Neighbor

gene id symbol gene type direction distance location
LOC118966024 LOC106562881 coding upstream 15789 86420114 ~ 86443279 (+)
LOC118966023 LOC106577312 coding upstream 49236 86400742 ~ 86409832 (+)
LOC118966021 NA coding upstream 242166 86215568 ~ 86216902 (+)
LOC110531757 LOC105008298 coding upstream 245428 86154256 ~ 86213640 (+)
LOC110531764 LOC106577387 coding upstream 306341 86141873 ~ 86153265 (+)
LOC118966725 NA coding downstream 8347 86537425 ~ 86553655 (+)
LOC118966726 NA coding downstream 28648 86557726 ~ 86559263 (+)
LOC118966035 LOC106592896 coding downstream 33903 86562981 ~ 86595571 (+)
LOC110531632 slc1a4 coding downstream 207806 86736884 ~ 86756777 (+)
LOC110516875 LOC106577366 coding downstream 235209 86764287 ~ 86783717 (+)
G96582 NA non-coding upstream 39103 86419539 ~ 86419965 (+)
G96578 NA non-coding upstream 41225 86417123 ~ 86417843 (+)
G96616 NA non-coding upstream 54200 86404336 ~ 86404868 (+)
G96611 NA non-coding upstream 64354 86394511 ~ 86394714 (+)
G96662 NA non-coding downstream 20327 86549405 ~ 86549792 (+)
G96630 LOC106592896 non-coding downstream 42894 86460228 ~ 86572480 (+)
G96674 NA non-coding downstream 70437 86599515 ~ 86600903 (+)
G96673 NA non-coding downstream 85358 86614436 ~ 86637361 (+)
G96577 NA other upstream 45856 86411207 ~ 86413212 (+)
G96133 NA other upstream 821013 85637747 ~ 85638055 (+)
G95821 NA other upstream 1223674 85234821 ~ 85235394 (+)
G95702 NA other upstream 1318062 85140140 ~ 85141006 (+)
G97752 NA other downstream 1227963 87757041 ~ 87757546 (+)
LOC118966052 LOC106577294 other downstream 1391929 87920968 ~ 87928366 (+)
G98104 NA other downstream 1601960 88130944 ~ 88165405 (+)
LOC118966060 LOC106613898 other downstream 2107972 88608182 ~ 88744413 (+)
LOC118966061 NA other downstream 2111935 88551971 ~ 88647803 (+)
LOC118966033 LOC106562881 coding upstream 22043 86492069 ~ 86495729 (+)
LOC118966031 NA coding upstream 37084 86473391 ~ 86480688 (+)
G96652 NA non-coding upstream 5185 86510222 ~ 86512587 (+)
G96632 NA non-coding upstream 37811 86479184 ~ 86479961 (+)
G96655 LOC106613263 non-coding downstream 155 86518470 ~ 86567362 (+)

Expression


Co-expression Network