LOC118966725


Basic Information

Item Value
gene id LOC118966725
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86537425 ~ 86553655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989992.1
CTGTCTTCCATCTACTCTACATGTTTACAGATGACATCACTAGGAAGCTAGATGACCACAATGGGAAGCTAGAAATACTGACTTCTCAGCTGGATTTTGTGAACACAAACTGGAGTCCAGACTTTGAAACCATCAGAAGACATGCAGTGGATGTGACTCTAGACCCTGATACTGCACATCGTAACCTCATCCTGTCTGATGACGGGAAACAAGTGAGACATGGAGAACTAAATCAGGTTCTCTCTGACAACAGGAAGAGGTATAAAAATTGGTCCGGTGTCCTCGGAAATGTGGGCTTCTCAAGGAAGTTCTACTATGAGGTGAAGGTGGAGGGGAAGACTGAGTGGACTTTGGGAGTGGTCAGAAGGTCCATCAATAGGAATGAGAGGTCTAGACCGATCCCTTATAAAGGATACTGGActgtggagctgaaggatggaaaGTACACAGCTCACGCTGATTCCCCTCTCACCCTCTTACTGAGAGAGAAGCCCCTGAAAGTGGGTGTGTTTGTGGATTATGAGAAGGGACAGGTATCCTTCTacaatgtggaggccaggtctcaTATCTACTCTTTCACACGCTCCAAATTTTCTAAGAAACTCTATCCATTCTTCAACCCTGGTGGTCCAGATAGTATTTCACTGGTCGTCTGTCCTGTGGatgccactgactga

Function

NR:

description
E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989992.1 True 677 mRNA 0.46 6 86537425 86553655

Neighbor

gene id symbol gene type direction distance location
LOC118966027 LOC106592896 coding upstream 8347 86459068 ~ 86529078 (+)
LOC118966033 LOC106562881 coding upstream 41696 86492069 ~ 86495729 (+)
LOC118966031 NA coding upstream 56737 86473391 ~ 86480688 (+)
LOC118966024 LOC106562881 coding upstream 94146 86420114 ~ 86443279 (+)
LOC118966023 LOC106577312 coding upstream 127593 86400742 ~ 86409832 (+)
LOC118966726 NA coding downstream 4071 86557726 ~ 86559263 (+)
LOC118966035 LOC106592896 coding downstream 9326 86562981 ~ 86595571 (+)
LOC110531632 slc1a4 coding downstream 183229 86736884 ~ 86756777 (+)
LOC110516875 LOC106577366 coding downstream 210632 86764287 ~ 86783717 (+)
LOC100135993 LOC100135993 coding downstream 817128 87370783 ~ 87373089 (+)
G96652 NA non-coding upstream 24838 86510222 ~ 86512587 (+)
G96632 NA non-coding upstream 57464 86479184 ~ 86479961 (+)
G96630 LOC106592896 non-coding downstream 18317 86460228 ~ 86572480 (+)
G96674 NA non-coding downstream 45860 86599515 ~ 86600903 (+)
G96673 NA non-coding downstream 60781 86614436 ~ 86637361 (+)
G96687 NA non-coding downstream 74285 86627940 ~ 86628418 (+)
G96577 NA other upstream 124213 86411207 ~ 86413212 (+)
G96133 NA other upstream 899370 85637747 ~ 85638055 (+)
G97752 NA other downstream 1203386 87757041 ~ 87757546 (+)
LOC118966052 LOC106577294 other downstream 1367352 87920968 ~ 87928366 (+)
G98104 NA other downstream 1577383 88130944 ~ 88165405 (+)
LOC118966060 LOC106613898 other downstream 2083395 88608182 ~ 88744413 (+)
LOC118966061 NA other downstream 2087358 88551971 ~ 88647803 (+)

Expression


Co-expression Network