LOC118936335 (LOC106592896)


Basic Information

Item Value
gene id LOC118936335
gene name LOC106592896
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86663515 ~ 86698225 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987911.1
TTTATTGTCGATAGTAACAAAAAAAACGTCTGAACATTGCGCGTGCATCGAATTGAATAATGGAGTCTGGACCAGACAGTCTGTTTGTGACTCTCCTGCTTCTCCTCCACAGTTCACACTCTGAGTCTGAGAGGTTTGAGGTTCTTGGTCCAACCGATACCATTCTTGCTGTGGCTGGTGATGACATCATTCTGCCCTGCTACCTCAAACCCAACATCAGCGCTGAGGACATGACAGTGGACTGGCTGAACCTGGACTTCAAAGATGGTCGTGTCTATCGTTACCAAAACAGAAAAATCATACGAGAGGATCAGATTCCCTCCTACATTGGAAGAACGTCACTGTTTGAAGAGGAACTATGGAGGGGCAACACCTCTTTAAAACTGTCCAGGGTACAAGGCACTGATGAGGGACATTACAAATGCTTTATTAAGGCAAAGAGCTGGGATCATGATCTCATTATTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCCATcgagggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGAACAGTAAAGGAGTCCATCTCTTTGCTGGTCCTCCTGAGATACATAGAGACTTCAAGGGATTCTACACAGTCAAACAACATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCCAGATCAATGAGAAGATGGAGACAGAGGTTCACCTCCCTAGTGAGTTATTTGATACAACCCCATTGAGAATGGCCTTCATTGTGTTATGCTGTCTGGGAGCCATCATTGGGATTGGGTTATCTCTGGCTATCTGCTGGATATCTTATAAGAAAGATGACCTCACTAGGAAGCTAGATGACCTCACTAGGAAGCTAGATGAACTCAAGGCAGAAAAGGAGGTCCTCAGGATGGAGAATGAGGACTTCAAGAAGAAGTTTAACTTCGAGAACCTCTGGAACCAGAATATCTTCCATCTACTCTACATGTTTAAAGATGACATCACTAAGAAGCTAGATGAACTCATTAGGAAGTTAGATAACAACAAGAAGGAGAGCAATGACCTCACTGAGAAGATAGATGTGGTTGAGGAGGATCTCATTCGTAATCTGGAGGGGCCTCGGGAAGGAGAGGGATGTTGAAACCATCAGAAGACATGCAGTGGATGTGACTCTAGACCAGGAGTGCTCAAGTACTATTTGAGACGGTCCGGTGACACACatttcctaggtggcaaaggATCAGATTTATTTAGCTGTTTTATAGCTCATTTGCTGCAATTCTCCACATTCCTCCATGTCTTATGTGTGTTTATATGATACCAGGGGTCAAAGCCCGACC
>XR_005053238.1
TTATTGTCGATAGTAACAAAAAAAACGTCTGAACATTGCGCGTGCATCGAATTGAATAATGGAGTCTGGACCAGACAGTCTGTTTGTGACTCTCCTGCTTCTCCTCCACAGTTCACACTCTGAGTCTGAGAGGTTTGAGGTTCTTGGTCCAACCGATACCATTCTTGCTGTGGCTGGTGATGACATCATTCTGCCCTGCTACCTCAAACCCAACATCAGCGCTGAGGACATGACAGTGGACTGGCTGAACCTGGACTTCAAAGATGGTCGTGTCTATCGTTACCAAAACAGAAAAATCATACGAGAGGATCAGATTCCCTCCTACATTGGAAGAACGTCACTGTTTGAAGAGGAACTATGGAGGGGCAACACCTCTTTAAAACTGTCCAGGGTACAAGGCACTGATGAGGGACATTACAAATGCTTTATTAAGGCAAAGAGCTGGGATCATGATCTCATTATTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCCATcgagggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGAACAGTAAAGGAGTCCATCTCTTTGCTGGTCCTCCTGAGATACATAGAGACTTCAAGGGATTCTACACAGTCAAACAACATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCCAGATCAATGAGAAGATGGAGACAGAGGTTCACCTCCCTAGTGAGTTATTTGATACAACCCCATTGAGAATGGCCTTCATTGTGTTATGCTGTCTGGGAGCCATCATTGGGATTGGGTTATCTCTGGCTATCTGCTGGATATCTTATAAGAAAGATGACCTCACTAGGAAGCTAGATGAACTCAAGGCAGAAAAGGAGGTCCTCAGGATGGAGAATGCGCACATTGGCTTGAATCCCGACCCAGGAGTCCCAGAGAGAGACTACATCTTCTAGTGTTCATGTTCATGATGTTCTCACTGTCTTCCATCTACTCTACATATTTACAGAGGACTTCAAGAAGAAGTTTAACTTCGAGAACCTCTGGAACCAGAATAATGACATCACTAAGAAGCTAGATGAACTCATTAGGAAGTTAG
>XR_005053239.1
TTATTGTCGATAGTAACAAAAAAAACGTCTGAACATTGCGCGTGCATCGAATTGAATAATGGAGTCTGGACCAGACAGTCTGTTTGTGACTCTCCTGCTTCTCCTCCACAGTTCACACTCTGAGTCTGAGAGGTTTGAGGTTCTTGGTCCAACCGATACCATTCTTGCTGTGGCTGGTGATGACATCATTCTGCCCTGCTACCTCAAACCCAACATCAGCGCTGAGGACATGACAGTGGACTGGCTGAACCTGGACTTCAAAGATGGTCGTGTCTATCGTTACCAAAACAGAAAAATCATACGAGAGGATCAGATTCCCTCCTACATTGGAAGAACGTCACTGTTTGAAGAGGAACTATGGAGGGGCAACACCTCTTTAAAACTGTCCAGGGTACAAGGCACTGATGAGGGACATTACAAATGCTTTATTAAGGCAAAGAGCTGGGATCATGATCTCATTATTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCCATcgagggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGAACAGTAAAGGAGTCCATCTCTTTGCTGGTCCTCCTGAGATACATAGAGACTTCAAGGGATTCTACACAGTCAAACAACATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCCAGATCAATGAGAAGATGGAGACAGAGGTTCACCTCCCTAGTGAGTTATTTGATACAACCCCATTGAGAATGGCCTTCATTGTGTTATGCTGTCTGGGAGCCATCATTGGGATTGGGTTATCTCTGGCTATCTGCTGGATATCTTATAAGAAAGATGACCTCACTAGGAAGCTAGATGACCTCACTAGGAAGCTAGATGAACTCAAGGCAGAAAAGGAGGTCCTCAGGATGGAGAATGGAGTCCCAGAGAGAGACTACATCTTCTAGTGTTCATGTTCATGATGTTCTCACTGTCTTCCATCTACTCTACATATTTACAGAGGACTTCAAGAAGAAGTTTAACTTCGAGAACCTCTGGAACCAGAATAATGACATCACTAAGAAGCTAGATGAACTCATTAGGAAGTTAG
>XR_005053240.1
TTATTGTCGATAGTAACAAAAAAAACGTCTGAACATTGCGCGTGCATCGAATTGAATAATGGAGTCTGGACCAGACAGTCTGTTTGTGACTCTCCTGCTTCTCCTCCACAGTTCACACTCTGAGTCTGAGAGGTTTGAGGTTCTTGGTCCAACCGATACCATTCTTGCTGTGGCTGGTGATGACATCATTCTGCCCTGCTACCTCAAACCCAACATCAGCGCTGAGGACATGACAGTGGACTGGCTGAACCTGGACTTCAAAGATGGTCGTGTCTATCGTTACCAAAACAGAAAAATCATACGAGAGGATCAGATTCCCTCCTACATTGGAAGAACGTCACTGTTTGAAGAGGAACTATGGAGGGGCAACACCTCTTTAAAACTGTCCAGGGTACAAGGCACTGATGAGGGACATTACAAATGCTTTATTAAGGCAAAGAGCTGGGATCATGATCTCATTATTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCCATcgagggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGAACAGTAAAGGAGTCCATCTCTTTGCTGGTCCTCCTGAGATACATAGAGACTTCAAGGGATTCTACACAGTCAAACAACATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCCAGATCAATGAGAAGATGGAGACAGAGGTTCACCTCCCTAGTGAGTTATTTGATACAACCCCATTGAGAATGGCCTTCATTGTGTTATGCTGTCTGGGAGCCATCATTGGGATTGGGTTATCTCTGGCTATCTGCTGGATATCTTATAAGAAAGATGACCTCACTAGGAAGCTAGATGAACTCAAGGCAGAAAAGGAGGTCCTCAGGATGGAGAATGGAGTCCCAGAGAGAGACTACATCTTCTAGTGTTCATGTTCATGATGTTCTCACTGTCTTCCATCTACTCTACATATTTACAGAGGACTTCAAGAAGAAGTTTAACTTCGAGAACCTCTGGAACCAGAATAATGACATCACTAAGAAGCTAGATGAACTCATTAGGAAGTTAG
>XR_005053236.1
TTTATTGTCGATAGTAACAAAAAAAACGTCTGAACATTGCGCGTGCATCGAATTGAATAATGGAGTCTGGACCAGACAGTCTGTTTGTGACTCTCCTGCTTCTCCTCCACAGTTCACACTCTGAGTCTGAGAGGTTTGAGGTTCTTGGTCCAACCGATACCATTCTTGCTGTGGCTGGTGATGACATCATTCTGCCCTGCTACCTCAAACCCAACATCAGCGCTGAGGACATGACAGTGGACTGGCTGAACCTGGACTTCAAAGATGGTCGTGTCTATCGTTACCAAAACAGAAAAATCATACGAGAGGATCAGATTCCCTCCTACATTGGAAGAACGTCACTGTTTGAAGAGGAACTATGGAGGGGCAACACCTCTTTAAAACTGTCCAGGGTACAAGGCACTGATGAGGGACATTACAAATGCTTTATTAAGGCAAAGAGCTGGGATCATGATCTCATTATTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCCATcgagggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGAACAGTAAAGGAGTCCATCTCTTTGCTGGTCCTCCTGAGATACATAGAGACTTCAAGGGATTCTACACAGTCAAACAACATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCCAGATCAATGAGAAGATGGAGACAGAGGTTCACCTCCCTAGTGAGTTATTTGATACAACCCCATTGAGAATGGCCTTCATTGTGTTATGCTGTCTGGGAGCCATCATTGGGATTGGGTTATCTCTGGCTATCTGCTGGATATCTTATAAGAAAGATGACCTCACTAGGAAGCTAGATGACCTCACTAGGAAGCTAGATGAACTCAAGGCAGAAAAGGAGGTCCTCAGGATGGAGAATGCGCACATTGGCTTGAATCCCGACCCAGGAGTCCCAGAGAGAGACTACATCTTCTAGTGTTCATGTTCATGATGTTCTCACTGTCTTCCATCTACTCTACATATTTACAGAGGACTTCAAGAAGAAGTTTAACTTCGAGAACCTCTGGAACCAGAATAATGACATCACTAAGAAGCTAGATGAACTCATTAGGAAGTTAG
>XM_036987915.1
TTTATTGTCGATAGTAACAAAAAAAACGTCTGAACATTGCGCGTGCATCGAATTGAATAATGGAGTCTGGACCAGACAGTCTGTTTGTGACTCTCCTGCTTCTCCTCCACAGTTCACACTCTGAGTCTGAGAGGTTTGAGGTTCTTGGTCCAACCGATACCATTCTTGCTGTGGCTGGTGATGACATCATTCTGCCCTGCTACCTCAAACCCAACATCAGCGCTGAGGACATGACAGTGGACTGGCTGAACCTGGACTTCAAAGATGGTCGTGTCTATCGTTACCAAAACAGAAAAATCATACGAGAGGATCAGATTCCCTCCTACATTGGAAGAACGTCACTGTTTGAAGAGGAACTATGGAGGGGCAACACCTCTTTAAAACTGTCCAGGGTACAAGGCACTGATGAGGGACATTACAAATGCTTTATTAAGGCAAAGAGCTGGGATCATGATCTCATTATTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCCATcgagggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGAACAGTAAAGGAGTCCATCTCTTTGCTGGTCCTCCTGAGATACATAGAGACTTCAAGGGATTCTACACAGTCAAACAACATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCCAGATCAATGAGAAGATGGAGACAGAGGTTCACCTCCCTAGTGAGTTATTTGATACAACCCCATTGAGAATGGCCTTCATTGTGTTATGCTGTCTGGGAGCCATCATTGGGATTGGGTTATCTCTGGCTATCTGCTGGATATCTTATAAGAAAGATGACCTCACTAGGAAGCTAGATGACCTCACTAGGAAGCTAGATGAACTCAAGGCAGAAAAGGAGGTCCTCAGGATGGAGAATGAGGACTTCAAGAAGAAGTTTAACTTCGAGAACCTCTGGAACCAGAATAATGACATCACTAAGAAGCTAGGTGGTGGAAGTCAACTAGGATTTGTGCCATTAGAGAAGTGATATGAGTCAAGGAGTCCCAGAGAGAGACTA
>XR_005053237.1
TTTATTGTCGATAGTAACAAAAAAAACGTCTGAACATTGCGCGTGCATCGAATTGAATAATGGAGTCTGGACCAGACAGTCTGTTTGTGACTCTCCTGCTTCTCCTCCACAGTTCACACTCTGAGTCTGAGAGGTTTGAGGTTCTTGGTCCAACCGATACCATTCTTGCTGTGGCTGGTGATGACATCATTCTGCCCTGCTACCTCAAACCCAACATCAGCGCTGAGGACATGACAGTGGACTGGCTGAACCTGGACTTCAAAGATGGTCGTGTCTATCGTTACCAAAACAGAAAAATCATACGAGAGGATCAGATTCCCTCCTACATTGGAAGAACGTCACTGTTTGAAGAGGAACTATGGAGGGGCAACACCTCTTTAAAACTGTCCAGGGTACAAGGCACTGATGAGGGACATTACAAATGCTTTATTAAGGCAAAGAGCTGGGATCATGATCTCATTATTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCCATcgagggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGAACAGTAAAGGAGTCCATCTCTTTGCTGGTCCTCCTGAGATACATAGAGACTTCAAGGGATTCTACACAGTCAAACAACATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCCAGATCAATGAGAAGATGGAGACAGAGGTTCACCTCCCTAGTGAGTTATTTGATACAACCCCATTGAGAATGGCCTTCATTGTGTTATGCTGTCTGGGAGCCATCATTGGGATTGGGTTATCTCTGGCTATCTGCTGGATATCTTATAAGAAAGATGACCTCACTAGGAAGCTAGATGACCTCACTAGGAAGCTAGATGAACTCAAGGCAGAAAAGGAGGTCCTCAGGATGGAGAATGCGCACATTGGCTTGAATCCCGACCCAGGAGTCCCAGAGAGAGACTACATCTTCTAGTGTTCATGTTCATGATGTTCTCACTGTCTTCCATCTACTCTACATATTTACAGAGGACTTCAAGAAGAAGTTTAACTTCGAGAACCTCTGGAACCAGAATAATGACATCACTAAGAAGCTAGGTGGTGGAAGTCAA

Function

NR:

description
butyrophilin subfamily 1 member A1-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987911.1 False 1380 mRNA 0.46 19 86663515 86698225
XR_005053238.1 False 1137 mRNA 0.46 12 86671506 86698224
XR_005053239.1 False 1131 mRNA 0.46 13 86671506 86698224
XR_005053240.1 False 1110 mRNA 0.46 12 86671506 86698224
XR_005053236.1 False 1159 mRNA 0.46 13 86671506 86698225
XM_036987915.1 False 1100 mRNA 0.46 13 86671590 86698225
XR_005053237.1 True 1152 mRNA 0.46 13 86671647 86698225

Neighbor

gene id symbol gene type direction distance location
LOC118966040 LOC106592896 coding downstream 13348 86602322 ~ 86650167 (-)
LOC110532855 LOC106562987 coding downstream 261351 86353680 ~ 86402164 (-)
LOC110531245 LOC106562987 coding downstream 313745 86299040 ~ 86349770 (-)
LOC110531234 LOC106563028 coding downstream 375998 86235239 ~ 86287517 (-)
LOC110513354 LOC106569852 coding downstream 439563 86222196 ~ 86223952 (-)
LOC118966041 NA coding upstream 32706 86730919 ~ 86732537 (-)
LOC110518258 LOC105008825 coding upstream 85599 86783824 ~ 86864120 (-)
LOC118966043 NA coding upstream 228214 86926439 ~ 86954561 (-)
LOC110532959 LOC106577289 coding upstream 259673 86957898 ~ 87049090 (-)
LOC118966727 LOC106577289 coding upstream 464052 87162277 ~ 87166534 (-)
G97264 NA non-coding downstream 34350 86628862 ~ 86629165 (-)
G97263 NA non-coding downstream 34853 86627942 ~ 86628662 (-)
G97227 NA non-coding downstream 66608 86482107 ~ 86596907 (-)
G97256 NA non-coding downstream 82479 86580000 ~ 86581036 (-)
G97211 NA non-coding downstream 83715 86577760 ~ 86579800 (-)
G97278 NA non-coding upstream 39052 86737277 ~ 86739833 (-)
G97283 slc1a4 non-coding upstream 55520 86753745 ~ 86756765 (-)
G97285 NA non-coding upstream 58835 86757060 ~ 86757361 (-)
G97287 NA non-coding upstream 61963 86760188 ~ 86760829 (-)
G97251 NA other downstream 40204 86566477 ~ 86623311 (-)
G97176 NA other downstream 270426 86392561 ~ 86393089 (-)
G97047 LOC106577388 other downstream 512176 86146009 ~ 86153321 (-)
G96002 NA other downstream 1311749 85346858 ~ 85351766 (-)
LOC110510598 LOC106594326 other downstream 1402983 85247338 ~ 85299641 (-)
G97308 NA other upstream 88832 86787057 ~ 86788052 (-)
G97535 NA other upstream 596132 87294357 ~ 87294999 (-)
LOC110531505 LOC106597820 other upstream 1215077 87911053 ~ 87919678 (-)
pex13 LOC106592834 other upstream 1365237 88054545 ~ 88065123 (-)
G98510 NA other upstream 1520604 88218829 ~ 88220804 (-)

Expression


Co-expression Network