LOC110531632 (slc1a4)


Basic Information

Item Value
gene id LOC110531632
gene name slc1a4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86736884 ~ 86756777 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987946.1
GAATTTGTTCCCAGCTAACCTTGTGGCTGCAGCATTCCGTTCTTATGCCACTGATTACAAGATGGTCGCCGTGGGAAACGACACCAATGGAACCATTCTCTACCAGAAGGTTCCTGTGGGCACAGAACCAGATGGTATGAACATCTTGGGCCTGGTTCTCTTTGCCATGGTGTTCGGTGTGGCACTGAGGaagctgggagaggagggggaggagctcATACGCTTCTTCAACGCTTTCAATGAAGCCACCATGGTGCTGGTGTCCTGGATCATGTGGTACGTCCCGTTCGGCATCATGTTCCTGGTGGGTAGTAAGatagtggagatggaggatgtGGTTCTGTTGGTGACCAGTCTGGGGAAATACATATTTGCCTCCGTCCTGGGTCATATCATCCACGGGGGGGTCATCCTGCCTCTCATCTACTTTGGGTTCACACGCAAGAACCCCTTCAGCTTCCTGTCCGGCCTCATCACGCCCTTCACCACCGCCTTCGCCACCTGCTCCAGCTCGGCGACCCTGCCCTCCATGATGAAGTGTGTAGAGGAGAACAACGGAGTGGACAAGCGGATCAGTCGTTTCATCCTTCCCATCGGAGCCACCGTCAACATGGACGGGGCGGCCATCTTCCAGTGCGTCGCGGCTGTCTTCATCGCTCAGCTCAACAACATAGAGCTCAACGCCGGTCAGATCTTTACCATCCTTGTGACAGCCACAGCGTCCAGTGTGGGTGCAGCGGGCATCCCAGCCGGGGGCATCATCACCATCGCCATCATCCTGGAGGCTATCGGCCTGCCCACCAACGACCTGTCACTCATGCTGGCCGTCGACTGGATCGTGGACCGCACCACCACCGTAGTGAACGTGGAGGGAGACGCCCTGGGGGCAGGGATCCTCCACCACATCAACCAACAGGAGATGAAGAAACAACACCTGGGGGAGGAGCTAGCGGAGGTCCTGGTGGACGCGGTGGCCAACACCCAGGCTGACGAGGAGACCTCCCCGCTCGTCACGCACCAAACCCTGGGTTCAGCAGGCGACCAATCCCCCAGGGAGACCGCGGAAGCCATTGAGTCTGTCCTGTGAACTCGTAAAACAACTGTGAATTCTGTCTCTATGGTTACaatcagtggtggctggtggcacttCAATtcggaggacgggctcatagcaAGGGCTGGAACGAAATGAATTGAACGGTATCAAAACACATCAATGATATGGTTTTCTTCGTGTTTGATGTAAttacattcactccattccagacattattattagccgtcctcccctcaccagccccCTCTGGTGTCTAAGGTTacgatgctgctgctgctactcgtGACACGACCGAGTCAACCCGAATCGTCTCTGATCACCTTTACCATACCTCTTAAAACAGTTCATGAGTCATTTCACTTCTCTGAAAAAAGTGCCCTAGATAAAGTTTGTTTTATATAGTGGTACTTCCTATTTGGAGTATTCTATAAGTGTATGTAAAAGCCACAGGAAGGTTAGCCTCGCCCTTTAGAATGAATCCAGGCTGCTTTCTGGTTTTGGGTGAGAGTGGTCTGAATCTAAAAAGGGAATCTCTCCTAACCGTGACATGGCTGTGACCTCACAAGGCAGATGGAAAGGAGAATCATTTACTAACTGACCTGGAGTTTTCTGTCGATAGTCAACCCAGAACGTGAAACATTAACCCCTCGAATGACAAAAGTCTCTCAAATATTTGGGGTAAATATTGAGGAAGAGCCACAGTTAACTTTCTGTTTATGTACTGGGAACCTACTGACCCAATGGCCTACTATGGTGCCTGTATCTAATATTGGAGTTAGGACCATAAGGATCTGTGTCGATATATAGTGCAGGTTCAATTAGAGCAAATCCTAACTTCTACTTCAATTAGATTTTCACTTTGTCTCAGATTGACATCAATGCGTGACTAAGTGGACATTTGCCTTAAATGGACGTTAGAAATATGGTGGTGAGCTGACTCCATTTACTAAACTGTTAAAGTGCAGACCGAGGCCAACTATCCTTCTATTGCTGTGAGAATAGATGTTGCCTCCATCAGTGATGTCCCAGACCCTTGCTACTATGGGTTTCATTTACTGAAGAAACCAAACCAACCATATGTTCTTTGGAACTTTTTATTTTTGAATTGAGAGGAAGCATGGTCAGACGGGCTATGTTACAAATGGtagcctgttccctatatagtgcacttattttaaCCTGAGcccagcaccctgttccctatatagtgcactacattctgccccatagggctctggttaaaagcatgACATTATGTAAGGAATAGATAGCCATTTGGGACGACACATGGCATTGATAAAGGCATGCTCTCATTATTGACTCGGAATAGTATTTATCGAAATCCTTGGACATGTAGGAAACTGCCAAAGTTGTTAGAGCAGCCTTTTCCTGTTGCATCTTATACAGTCTATGGGATACATGTATGTTTtccaaatgactaaaatgttcaAATTGACAAAATAATTATCATATTACTGCAGTGGTTCTGCTGCCACCTAGTGGTGGCGTTGTGTAGTTGTTCTGCTGCCACCTATTGGTGGCGTGCTGTAGTGGTTCTGCTGCCACCTAGTGGTGGTGTGGCGTAGTGGTTCTGCTTCCACCTAGTGGCGGTGTGGTGTAGTGGTTCTGCTGCCACCTAGTGGTGGTGTGGCGTAATGGTTCTGCTGCCACCTAGTGGTGGCGTGGCTCAATGTTTTGAGTTCTGACATGAGAATGGAGCAGGCATTTGATAGTACAGCGTTTTAATTTAATTTGATCCTAAATGGGCCAATGTGGCCTCGTTTATCTATCTGGTCAAAtgtatttctttttttctttGTAATGAATCACTATTGCTGTTTGCTGGAAATGATTTACTCTGATTTATGGGGGGGAATTATGTTGTACTAACTCACTAATGTATCAACTCTGTTCCACAATTCCACTTCTACTCAGACTAATTGTTTGTTGAAGCAGTTTTTAGATGTTGGAAATGGAAGGTTGTCCCTCTAGAAAGGACAATTATATGTTATTAACTGTTTTATACAAAACTGTATGCACCCTGATTTGTCAGGATCTTTGGGAATATATTGTCTCTAAACTATAATGTCCTTAAAAATGTGAAAAGGTTGCCAATCTGTCATTGGAATACTGAGGCTCTACATAGTTTGACAGTGAATGATGTATTTTTTGGAAAGCAGAAACTGGTTGTGAGAAGGAGCTTATTAAGTTTAAATATTCTTTCTCTAATTAACATGATCCTCTTTCAATCGAACAACCCTTTACTTTTATAATGACTTTTAAATCTTTTACCCCGAAGCTGACCGAATTGAAAGTATTCGTGAGAATATGTTGAAATAATCTGGAACAATCGCAGATATGTACTTGAATAAACTATATgaaggatttttttatttattctaaTTGTGTTAACATTTTGCATAATTTCTATTTTTGAAATGCGATTTAGGTATTTTCTCTCAATTTCTAGTTGCCAAATCTGTTCCTAACGCCTTTCTCTGCTGGGGAACTACTTTTCTAATAGCCTAAAGTATGTAGCCTGGTCCAGCTCTggttgtgctcttgccaactccatcGATGTAATTGTCAAGACAATCTgttggcatgacaatgagtgGCATGACATggtagcacaaacagatctggcacGCAGCCTATAAAGTATGTCCTCCATTTTGTTTTATGGTATTTTGACCAACAGGAATAACGACTTTGTTTCATGTGCAATGATGACGTCTATCTTTGTAACACAGCTGTCTCTTTTACTTGTCTCTGTCTTTTAACGTTAAATATACATGTGTTTCACACAACAGAgatga

Function

symbol description
slc1a4 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including alar plate midbrain region; nervous system; optic vesicle; pancreatic system; and yolk syncytial layer. Orthologous to human SLC1A4 (solute carrier family 1 member 4).

NR:

description
PREDICTED: neutral amino acid transporter A

GO:

id name namespace
GO:0006835 dicarboxylic acid transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0017153 sodium molecular_function

KEGG:

id description
K05615 SLC1A4, SATT; solute carrier family 1 (neutral amino acid transporter), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987946.1 True 3876 mRNA 0.45 7 86736884 86756777
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118966035 LOC106592896 coding upstream 141313 86562981 ~ 86595571 (+)
LOC118966726 NA coding upstream 177621 86557726 ~ 86559263 (+)
LOC118966725 NA coding upstream 183229 86537425 ~ 86553655 (+)
LOC118966027 LOC106592896 coding upstream 207806 86459068 ~ 86529078 (+)
LOC110516875 LOC106577366 coding downstream 7510 86764287 ~ 86783717 (+)
LOC100135993 LOC100135993 coding downstream 614006 87370783 ~ 87373089 (+)
LOC118966047 adgrb3 coding downstream 719727 87476504 ~ 87645037 (+)
LOC118966730 NA coding downstream 892152 87648929 ~ 87661492 (+)
LOC118966052 LOC106577294 coding downstream 1164191 87920968 ~ 87928366 (+)
G96727 NA non-coding upstream 839 86735845 ~ 86736045 (+)
G96726 NA non-coding upstream 1266 86735229 ~ 86735618 (+)
G96725 NA non-coding upstream 2069 86732382 ~ 86734815 (+)
G96719 NA non-coding upstream 40151 86690611 ~ 86696733 (+)
G96718 NA non-coding upstream 40704 86690002 ~ 86696180 (+)
G96731 NA non-coding downstream 2105 86758882 ~ 86760019 (+)
G96732 NA non-coding downstream 4395 86761172 ~ 86761485 (+)
G96734 NA non-coding downstream 17698 86774475 ~ 86774929 (+)
G96740 NA non-coding downstream 33127 86789904 ~ 86790129 (+)
G96761 NA non-coding downstream 67811 86824588 ~ 86824907 (+)
LOC118966033 LOC106562881 other upstream 241192 86492069 ~ 86495729 (+)
G96630 LOC106592896 other upstream 276042 86460228 ~ 86572480 (+)
LOC118966024 LOC106562881 other upstream 297412 86420114 ~ 86443279 (+)
G96577 NA other upstream 323672 86411207 ~ 86413212 (+)
G96133 NA other upstream 1098829 85637747 ~ 85638055 (+)
G97752 NA other downstream 1000264 87757041 ~ 87757546 (+)
G98104 NA other downstream 1374261 88130944 ~ 88165405 (+)
LOC118966060 LOC106613898 other downstream 1880273 88608182 ~ 88744413 (+)
LOC118966061 NA other downstream 1884236 88551971 ~ 88647803 (+)

Expression

LOC110531632(slc1a4) Expression in all Baseline Samples

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LOC110531632(slc1a4) Expression in each Bioproject

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LOC110531632(slc1a4) Expression in each Sample
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Co-expression Network