LOC110532959 (LOC106577289)


Basic Information

Item Value
gene id LOC110532959
gene name LOC106577289
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86957898 ~ 87049090 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990006.1
TGCCCAGCTGGATATTTTGGCACCCTGTGTGACCTGGATATTAATGAGTGTGAAGTTTCACCTTGCCTTCACGAGGCCGTCTGTATCAACAAACCTGGAGGCTTCAAGTGTGTCTGTCGCCCTGGAAACGCAGGGACGTGGTGTGAACTGAGCATAGACGAGTGTGTGTCGAACCCGTGCCAAAACGGCGGGAGCTGCGTGGATGGTCCCAATCGATACCAATGCTTATGTGCTGGAGGCTTCATGGGTTTCCATTGCGAGACCAACTTTGATGAATGCATGTCGGGCCCCTGTCTTCACGGGAGGTGCATTGATGGAGTGgatgtgtattactgtcagtgtGAATTGGGATGGACTGGTGCCAGATGTGAAATGAACATTGATGAGTGTTCTTCCAGTCCGTGTCTGAATGGTGGCTCCTGTGTGGACTTGATTGATAAATATGCGTGTTTCTGCCTGGATGGATACACTGGAAAGAACTGTGACATTGACATAGACGTCTGTCTCGAAACCCCCACCAATGTCACCCTGTGTTTAAATGGAGGGACTTGTCTCGATGGCCAAGGCTCCAATTTCACCTGCAGTTGTCCAGCAGGTTTCATAGGGGACTTCTGTGAGATGGACGTTAATGAATGCTGTTCAGATCCATGTCTCCACGGGGCTATCTGCCGAGACCTGCTTAACGGATACCTCTGTCACTGCAGGGCAGGTTGGACAGGCCTTCACTGTGAGTTGGACATTAATGAGTGCCTTCCGCAGCCCTGCAACCAAGGGATGTGCATCCAGAACGAGCCTGGCTACGGCTACACCTGTTTCTGTCGTCCTGGATTTGTGGGGAGGAACTGTGAGCACAATTACGATGACTGCCTGCTCCAGCCGTGTCCGGGAGGATCCTCCTGTGTTGATGGTATCAACGAGGTCAGCTGTCAGCCAGTCGAGGGAGACATGTCCTCTGTGCCCTGGGAGCCTTCTATGACACAAACCCCTCAGGGATCCCTGCTCACCACGTCACCAATGTCACCAGTGTCACCgcggctgaagaaatttggcttgccaCCCCAGGTCCTCTCCAAATACTGccgctgcaccattgagagtgtcctgaccggttgcatcatggCCTGGTATGGGAATTGCTCCATCTACAACCGCAAGGCCAtccagcgggtggtgaagatggcccagtacatcactgggaccgtggcCCTCCGGCGGGTGGggaagacggcccagtacatcactgggaccttGGCCCTCCGGCGGGTGTtgaagacggcccagtacatcactgggaccgtggcCCTCCGGCGGacggcccagtacatcactgggaccgtggcCCTCCGGcgggtggtgaagacggcccagtacatcactgggaccgtggcCCTCCCGCGGGTGGggaagacggcccagtacatcactgggaccgtggcCCTCCGGCGGGTGGGgaagatggcccaGGTATTGGTCCTATTCCTGTCCAGAGAGAAGGAGGACTCCAGCTACGTCCAGTACTCTGGTAATTCCTACTTGGAGTTTGAGGGCATAGACCTCGGTGCCAACAACAACATCACTGTGAGGTTTCAGACCCAGGAGGCCCAGGGGACCATTCTGTACGTTGACCAAGGAGCAGTGACCAGGGGCTTCTTTTTCATGAAACTCTTCATCCAGGAGGGAATGCTACAGTATGTATTCTCCTGTAACCGAGAGGAAGGGATCAGAAGGATCAATACATCCATCCGTGTTGACGACGGCAATCCATACATCGTCTACGTCAGACAACAACTGGCGCCATGCGAAGCGGAGGTGGTCGTGTCTGGGTATGAGAGAGTCAGAAGCCAGCCCAGCAACTACTGGTCAGGACTCACCATACAGAGAACGAGCCATCTGTTTATAGGGGGCTTGCCTCGTCGATACCTGCCATATCAGGGAGCCCAACCCTTCTCCAACTACACCGGCTGCGTAGAAATAATTGAAATGAATAAGCTGCGGGGATTCTACACATCCAGTGCCGTTGCCGGCAGCAACGTAGACGACTGCAGGTAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990006.1 True 2049 mRNA 0.55 14 86957898 87049090

Neighbor

gene id symbol gene type direction distance location
LOC118966043 NA coding downstream 3337 86926439 ~ 86954561 (-)
LOC110518258 LOC105008825 coding downstream 93778 86783824 ~ 86864120 (-)
LOC118966041 NA coding downstream 225361 86730919 ~ 86732537 (-)
LOC118936335 LOC106592896 coding downstream 259673 86663515 ~ 86698225 (-)
LOC118966040 LOC106592896 coding downstream 307731 86602322 ~ 86650167 (-)
LOC118966727 LOC106577289 coding upstream 113187 87162277 ~ 87166534 (-)
LOC118966728 LOC106577282 coding upstream 118795 87167885 ~ 87204885 (-)
LOC118966729 LOC106577282 coding upstream 158374 87207464 ~ 87230079 (-)
LOC118966045 LOC106577282 coding upstream 183835 87232925 ~ 87242407 (-)
LOC118966042 LOC106577473 coding upstream 211476 87260566 ~ 87282239 (-)
G97379 NA non-coding downstream 43553 86913824 ~ 86914345 (-)
G97315 NA non-coding downstream 150736 86806839 ~ 86807162 (-)
G97313 NA non-coding downstream 151390 86800443 ~ 86806508 (-)
G97312 NA non-coding downstream 153223 86799028 ~ 86804675 (-)
G97461 NA non-coding upstream 36546 87085636 ~ 87086121 (-)
G97376 NA non-coding upstream 50989 87100079 ~ 87364942 (-)
G97474 NA non-coding upstream 84493 87133583 ~ 87134110 (-)
G97490 NA non-coding upstream 125331 87174421 ~ 87175064 (-)
G97495 NA non-coding upstream 137904 87186994 ~ 87188541 (-)
G97308 NA other downstream 169846 86787057 ~ 86788052 (-)
G97251 NA other downstream 334587 86566477 ~ 86623311 (-)
G97176 NA other downstream 564809 86392561 ~ 86393089 (-)
G97047 LOC106577388 other downstream 806559 86146009 ~ 86153321 (-)
G96002 NA other downstream 1606132 85346858 ~ 85351766 (-)
G97535 NA other upstream 245267 87294357 ~ 87294999 (-)
LOC110531505 LOC106597820 other upstream 864212 87911053 ~ 87919678 (-)
pex13 LOC106592834 other upstream 1014372 88054545 ~ 88065123 (-)
G98510 NA other upstream 1169739 88218829 ~ 88220804 (-)
G98549 NA other upstream 1265186 88314276 ~ 88314696 (-)

Expression


Co-expression Network