LOC118966729 (LOC106577282)


Basic Information

Item Value
gene id LOC118966729
gene name LOC106577282
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 87207464 ~ 87230079 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990028.1
ATGGATTTACAAGACCAGATTGGTGATTGTGTTTGTCTGCAGATCAATGATTACTGGTTCATCTCTTCCTCACAGTGTCTCTGTGCTCCTGGATGGATAGGGGAGTTCTGTCAGTACGGAGGGAACGCCTGCCTGATCTACCCAGACAGCTGTATGAATGGGGCCACCTGCATCACCACAAGTCAACCTACGGCTCCCCCACAGTACAGATGTATCTGCAGCCCTGGTTACACAGGACCCCACTGTGAGACAGAAATTAACCAGTGTTTCTCCAACCCCTGTCTGCACAATGGGACATGCTTGGACTCTGTTGGCTTCTACAAATGCAGGTGTCCACCAGGATTTCTGGGCCAGAAGTGTGAGGTGGATGTAGATGCCTGTACCCTACCCAACACCACATGCCCTAGAAACACACATTGTCTGGATCTGCCTGATGGACTGAAGTACACATGTCGCCTGCTGTGCCCACCGAACATACAAccatGTGCCAACGGAGGACGTTGTGTCTTGAACAACGGCAGCAGTTACACCTGTGTCTGTGCACCTGGATGGGCAGGACGTAACTGCCGTTTAAACATCAATGATTGTGTTCAGCACTGGTGCCAAAACGGGGCCACTTGTGTAGATCAGATTGATGGCTACAGCTGCCTTTGTCCCAGAGGATACAGCGGTAGCTACTGTGAGATGGACGTTGACAACTGCATTGGACACCACTGCTCTGAGCACGGCGTATGTCTAGACCAACAATACAACTATACTTGTCGCTGTGAGCTCGGGTTCCAGGGGAGCTACTGTGAGCAGGAGACGGATGAGTGTAAGAGTTCCCCGTGTGTCAATGGTGCCACCTGCGAGGATGTCATCGGAGGCTATCAATGCCACTGCCCCCcagggtttgaagGTCAACGCACCAACTAA

Function

NR:

description
PREDICTED: fibropellin-1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990028.1 True 915 mRNA 0.52 6 87207464 87230079

Neighbor

gene id symbol gene type direction distance location
LOC118966728 LOC106577282 coding downstream 2579 87167885 ~ 87204885 (-)
LOC118966727 LOC106577289 coding downstream 40930 87162277 ~ 87166534 (-)
LOC110532959 LOC106577289 coding downstream 158374 86957898 ~ 87049090 (-)
LOC118966043 NA coding downstream 252903 86926439 ~ 86954561 (-)
LOC110518258 LOC105008825 coding downstream 343344 86783824 ~ 86864120 (-)
LOC118966045 LOC106577282 coding upstream 2846 87232925 ~ 87242407 (-)
LOC118966042 LOC106577473 coding upstream 30487 87260566 ~ 87282239 (-)
LOC118966049 ehbp1 coding upstream 434588 87664667 ~ 87746089 (-)
LOC110508309 LOC106600605 coding upstream 543733 87773812 ~ 87825477 (-)
LOC110531505 LOC106597820 coding upstream 680974 87911053 ~ 87919678 (-)
G97495 NA non-coding downstream 18923 87186994 ~ 87188541 (-)
G97490 NA non-coding downstream 32400 87174421 ~ 87175064 (-)
G97474 NA non-coding downstream 73354 87133583 ~ 87134110 (-)
G97461 NA non-coding downstream 121343 87085636 ~ 87086121 (-)
G97440 NA non-coding downstream 168012 87038990 ~ 87039452 (-)
G97509 NA non-coding upstream 6009 87236088 ~ 87236341 (-)
G97541 NA non-coding upstream 77689 87307768 ~ 87308157 (-)
G97812 NA non-coding upstream 176359 87406438 ~ 87407619 (-)
G97830 NA non-coding upstream 210860 87440939 ~ 87441633 (-)
G97308 NA other downstream 419412 86787057 ~ 86788052 (-)
G97251 NA other downstream 584153 86566477 ~ 86623311 (-)
G97176 NA other downstream 814375 86392561 ~ 86393089 (-)
G97047 LOC106577388 other downstream 1056125 86146009 ~ 86153321 (-)
G96002 NA other downstream 1855698 85346858 ~ 85351766 (-)
G97535 NA other upstream 64278 87294357 ~ 87294999 (-)
pex13 LOC106592834 other upstream 833383 88054545 ~ 88065123 (-)
G98510 NA other upstream 988750 88218829 ~ 88220804 (-)
G98549 NA other upstream 1084197 88314276 ~ 88314696 (-)

Expression


Co-expression Network