LOC118966045 (LOC106577282)


Basic Information

Item Value
gene id LOC118966045
gene name LOC106577282
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 87232925 ~ 87242407 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053247.1
ATCCCAACCCATGTAGGAATGGCGGAGAGTGTGAGGAGAGCTCCGAGAGCATCGCTGGACATGCTTGTGCTTGTCTGGAGGGATTCACGGGCCTCCGCTGTGACACCCCCGTTAACATCAATTGCCTTTCATACGAATGTCAGCGGGAAAAGGCGTGCTCCTTGGGGGAACATaccTCTCCTGAGTGTGCAGCCTCAGTCTGGCAGTGTTCAGATGGCACCACAGGCCCACAGTGCAGGAGGCAGCGAGGCCCGTGCAGCCCTTCGCCCTGCCACAACAACGCCAGCTGTTTAGTCCAGGGAGAGGACTACGTCTGCAGgtGCCTGCCAGGGTTTTCCGGGAAGAGCTGTGAAGAGATAATAGACTACTGCAGTCTGCTCAGTGTCAACTGTCTGCACCAGGGACTGTGCCTCAGCGTAATTGGTGGATATAATGTAAGTCAGCCAATAGGTGAGGCCTAATGAAATGTGggaaaggcaacaaaaaaaaaggtttGATATGATGAGCCATAGTT

Function

NR:

description
PREDICTED: neurogenic locus notch homolog protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053247.1 True 514 mRNA 0.54 3 87232925 87242407

Neighbor

gene id symbol gene type direction distance location
LOC118966729 LOC106577282 coding downstream 2846 87207464 ~ 87230079 (-)
LOC118966728 LOC106577282 coding downstream 28040 87167885 ~ 87204885 (-)
LOC118966727 LOC106577289 coding downstream 66391 87162277 ~ 87166534 (-)
LOC110532959 LOC106577289 coding downstream 183835 86957898 ~ 87049090 (-)
LOC118966043 NA coding downstream 278364 86926439 ~ 86954561 (-)
LOC118966042 LOC106577473 coding upstream 18159 87260566 ~ 87282239 (-)
LOC118966049 ehbp1 coding upstream 422260 87664667 ~ 87746089 (-)
LOC110508309 LOC106600605 coding upstream 531405 87773812 ~ 87825477 (-)
LOC110531505 LOC106597820 coding upstream 668646 87911053 ~ 87919678 (-)
LOC110531618 LOC106577176 coding upstream 787121 88029528 ~ 88053890 (-)
G97505 NA non-coding downstream 4430 87224014 ~ 87228495 (-)
G97495 NA non-coding downstream 44384 87186994 ~ 87188541 (-)
G97490 NA non-coding downstream 57861 87174421 ~ 87175064 (-)
G97474 NA non-coding downstream 98815 87133583 ~ 87134110 (-)
G97461 NA non-coding downstream 146804 87085636 ~ 87086121 (-)
G97541 NA non-coding upstream 65361 87307768 ~ 87308157 (-)
G97812 NA non-coding upstream 164031 87406438 ~ 87407619 (-)
G97830 NA non-coding upstream 198532 87440939 ~ 87441633 (-)
G97848 NA non-coding upstream 230641 87473048 ~ 87473627 (-)
G97308 NA other downstream 444873 86787057 ~ 86788052 (-)
G97251 NA other downstream 609614 86566477 ~ 86623311 (-)
G97176 NA other downstream 839836 86392561 ~ 86393089 (-)
G97047 LOC106577388 other downstream 1081586 86146009 ~ 86153321 (-)
G96002 NA other downstream 1881159 85346858 ~ 85351766 (-)
G97535 NA other upstream 51950 87294357 ~ 87294999 (-)
pex13 LOC106592834 other upstream 821055 88054545 ~ 88065123 (-)
G98510 NA other upstream 976422 88218829 ~ 88220804 (-)
G98549 NA other upstream 1071869 88314276 ~ 88314696 (-)

Expression


Co-expression Network