LOC118966042 (LOC106577473)


Basic Information

Item Value
gene id LOC118966042
gene name LOC106577473
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 87260566 ~ 87282239 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987964.1
TCTAAGCGTCAGGTTTCCGTAGCAACAGGTCCTTCACCGAGGCTTCCGGTGTTGTCTCACATGTCCAAAGAAAACATTGTAGCTATCCTTTTTTAAATTGGAAACATATGACTCCATGTACTTTTGCAACTAACCATCATTCGAAGTGTGCTGCTGCAACATGTTCAACTGAGGGCTGGCGTGTGACCTCTATGACTGACTGTAGTCGGACTAAACCAGGCATCACGTCTCATTCCTGGAAAAAAGGTTGGTGTGTTGCCATGACGTTCATCTAGCCTCCTCCATTGGACCTCTGACTTTATCAGACAGGAATTTAATTACATCTCTTTTACCTGAACATTCCTCAAATTAAATGTCTTCAGGAATGCTCTGAAGACCTGTACGAAAGCTCTGAAGACCTGTACGAAAGCTCTGAAGACCTGTACGAAAGCGAATAGGGAAGCACCAAAAGGGAGAAACTTAAAAATGCAGAGGCTTTCATTTCACATCATCGCTGTCATAATAAGCTATTTTCTCAATGGCTGCATAGTTGTTCACAGCCAGACAGTCTGCAGCCGACCAGCCAATCTGGAATGGCACCTACAACCACAAACTGCTCAGGTGAAATGGACACTCATGGAAAACATCTGTGATAGTATGGTCCAATGTTGGGGTGATCAAGAAAGGACAGAGACCCAAAAGTCAGATGTTCCGCCAACTTGGAACTTACCTCAGATTTGTCCTCTAGAGGTGCAGTTTGGCGTCAAGCTGTTTGTTTCTATTGATGCCACTCTGGATTTATACGGTATCAGGATCCTCAATGTGTCAAAGGAGGACTTTGAAAGTTGTTCCACTGCACCACAGTCACAAGACCAGTTTCTCTGTTCCGATGACGTTATGAATGCGTCTAGGCAGGTCCAACCTAAGTGGCTTCTCCCGGGCCTTCATTATTTCATAGCTTCGCATGAGGGGAATTCACAGCTCTGCAAGCTGGGTCTTCGTCTCAACGTCTCTGTGAAGGAACAACAGTGTCAAAGCAGCCCACTAGTGCGACTCTGCTCCGGGAACGGTGTTTGTAGGACAAGCTTTTGGGAAGACGGAGCGTACCGCTGTCAGTGCCGCCAGCATTACTCTGGAAAGTTCTGTGAGAAGTTTGATGCGTGTTTGGAAAACCCATGTGAGAACGAAGGAGTCTGTGTAACCAATGGTACGACAGATCACATCCACGCAACGTATAAGTGTTTGTGCCCTCCACTTTTTTCAGGGGCTAACTGCTCTGATGTGATTGGACGAGAGAACTGTGAAAGAGTTTGTCGTAATGGAACGTGTCTCCAAGTTTCACCTTTCTCCTTCAAATGTGTGTGTTACACAGGACACCCAGCTGGATTTACCGTGTATAAGCTGGACTGTTTGGATTTACCTGTTGCcgtttggacctggacctaccgaAAACCCGATTCGTGTACTgaaccctgctatccttgacctcgcCTGCGGTCTGG
>TU107861
AACAGTGTCAAAGCAGCCCACTAGTGCGACTCTGCTCCGGGAACGGTGTTTGTAGGACAAGCTTTTGGGAAGACGGAGCGTACCGCTGTCAGTGCCGCCAGCATTACTCTGGAAAGTTCTGTGAGAAGTTTGATGCGTGTTTGGAAAACCCATGTGAGAACGAAGGAGTCTGTGTAACCAATGGTACGACAGATCACATCCACGCAACGTATAAGTGTTTGTGCCCTCCACTTTTTTCAGGGGCTAACTGCTCTGATGTGATTGGACGAGAGAACTGTGAAAGAGTTTGTCGTAATGGAACGTGTCTCCAAGTTTCACCTTTCTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987964.1 False 1481 mRNA 0.47 5 87260566 87282239
TU107861 True 325 lncRNA 0.49 2 87268103 87269776

Neighbor

gene id symbol gene type direction distance location
LOC118966045 LOC106577282 coding downstream 18159 87232925 ~ 87242407 (-)
LOC118966729 LOC106577282 coding downstream 30487 87207464 ~ 87230079 (-)
LOC118966728 LOC106577282 coding downstream 55681 87167885 ~ 87204885 (-)
LOC118966727 LOC106577289 coding downstream 94032 87162277 ~ 87166534 (-)
LOC110532959 LOC106577289 coding downstream 211476 86957898 ~ 87049090 (-)
LOC118966049 ehbp1 coding upstream 382428 87664667 ~ 87746089 (-)
LOC110508309 LOC106600605 coding upstream 491573 87773812 ~ 87825477 (-)
LOC110531505 LOC106597820 coding upstream 628814 87911053 ~ 87919678 (-)
LOC110531618 LOC106577176 coding upstream 747289 88029528 ~ 88053890 (-)
pex13 LOC106592834 coding upstream 772306 88054545 ~ 88065123 (-)
G97509 NA non-coding downstream 24225 87236088 ~ 87236341 (-)
G97505 NA non-coding downstream 32071 87224014 ~ 87228495 (-)
G97495 NA non-coding downstream 72025 87186994 ~ 87188541 (-)
G97490 NA non-coding downstream 85502 87174421 ~ 87175064 (-)
G97474 NA non-coding downstream 126456 87133583 ~ 87134110 (-)
G97541 NA non-coding upstream 25529 87307768 ~ 87308157 (-)
G97812 NA non-coding upstream 124199 87406438 ~ 87407619 (-)
G97830 NA non-coding upstream 158700 87440939 ~ 87441633 (-)
G97848 NA non-coding upstream 190809 87473048 ~ 87473627 (-)
G97857 NA non-coding upstream 204661 87486900 ~ 87488031 (-)
G97308 NA other downstream 472514 86787057 ~ 86788052 (-)
G97251 NA other downstream 637255 86566477 ~ 86623311 (-)
G97176 NA other downstream 867477 86392561 ~ 86393089 (-)
G97047 LOC106577388 other downstream 1109227 86146009 ~ 86153321 (-)
G96002 NA other downstream 1908800 85346858 ~ 85351766 (-)
G97535 NA other upstream 12118 87294357 ~ 87294999 (-)
G98510 NA other upstream 936590 88218829 ~ 88220804 (-)
G98549 NA other upstream 1032037 88314276 ~ 88314696 (-)

Expression


Co-expression Network