LOC118966730


Basic Information

Item Value
gene id LOC118966730
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 87648929 ~ 87661492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990029.1
atgcgcTTGGGGGGCACCTTCCTCGCCCGCATGGAGCTGCCAACACAGGACGCCTCCGTTCACAAGAACTGGGTGCGGTCGTTCTCCGTGCCCAACccTGCAGAGGCCTGCAGAGGGTTAGAGTTTGGgtcagacaacagcagcaggtcaaaCAACAGCAGCAGGCTAGACaacagcaggtcagacaacagcagcaggtcagacaacagcagcaggtcagacaacagcagcaggtcaaacaacagcagcaggtcaaaCAACAGCAGCAGGCTAGACaacagcaggtcagacaacagcagcaggtcagacaacagcagcaggtcagacaacagcagcaggtcagacgacagcagcaggtcagacgacAGCAGCAGGTCAAACAACAGCAGCAGGCTAGACAACAGCAGGTCAGACGACAGCAGCAggccagacaacagcagcaggtcagacaacagcagcaggtcagacgacagcagcaggtcagacaacagcaagtcagacgacagcagcaggtcagacaacagcagcaggtcagacaacagcagcaggtcagacaacagcaggtcagacaacagcaggtcagacgacagcagcaggtcagacgacAGCAGCAGGTCAAACAACAGCAGCAGGCTAGACAACAGCAGGTCAGacgacagcagcaggtcagacaacagcagcaggtcagacgacagcagcaggtcagacgacagcagcaggtcagacgacagcagcaggtcagacaacagcagcaggtcagacaacagcagcaggtcagacaacagcagcaggtcaaaCAACAGCAGcaggtcagacaacagcagcaggtcagacaacagaAGCAGGTCAAACAGCAGCAGGTCAAACAGCAGCAGGTcaaacaacagcagcaggtcagacaacagcagcaggtcaaacaacagcagcaggtcaaacaacagcagcaggtcaaacaacagcagcaggtcaggcaacagcagcaggtcaggcaacagcagcaggtcagacaacagcagcaggtcagacaacagcagcaggtcagacaacagcagcaggtcagacaacagcaggtcaaacaacagcagcaggtcagacaacagcagcaggtcaaaCAACAGCAGCAGGCTAGACaacagcaggtcagacaacagcagcaggtcagacaacagcagcaggtcagacaacagcagcaggtcaaacaacagcagcaggtcaaaCAACAGCAGCAGGCTAGACaacagcaggtcagacaacagcagcaggtcagacaacagcagcaggtcagacaacagcagcaggtcagacgacagcagcaggtcagacgacAGCAGCAGGTCAAACAACAGCAGCAGGCTAGACAACAGCAGGTCAGACGACAGCAGCAggccagacaacagcagcaggtcagacaacagcagcaggtcagacgacagcagcaggtcagacaacagcaagtcagacgacagcagcaggtcagacaacagcagcaggtcagacaacagcagcaggtcagacaacagcaggtcagacaacagcaggtcagacgacagcagcaggtcagacgacAGCAGCAGGTCAAACAACAGCAGCAGGCTAGACAACAGCAGGTCAGacgacagcagcaggtcagacaacagcagcaggtcagacgacagcagcaggtcagacaacagcagcaggtcagacgacagcagcaggtcagacaacagcagcaggtcagaaaacagcagcaggtcagacaacagcagcaggtcaaaCAACAGCAGGTCAAACAACAGCAGCAGGCTAGACAACAGCAGGTCAGacgacagcagcaggtcagacgacagcagcaggtcagacgacagcagcaggtcagacaacagcagcaggtcagacgacagcagcaggtcagacaacagcaggTCAAACAACAGCAGCAGGCTAGACaacagcaggtcagacaacagcagcaggtcagacaacagcagcaggtcagacaacagcaggtcagacgacagcagcaggtcagacgacagcagcaggtcaaacaacagcagcaggctagacagcagcaggtcagacgacagcagcaggtcagacaacagcagcaggtcagacaacagcagcaggtcagacaacagcagcaggtcagacaacagcaagtcagacgacagcagcaggtcagacaacagcagcaggtcagacaacagcagcaggtcagacaacagcaggtcagacaacagcaggtcagacgacagcagcaggtcagacgacAGCAGCAGGTCAAACAACAGCAGCAGGCTAGACAACAGCAAGTCAGacgacagcagcaggtcagacaacagcagcaggtcagacgacagcagcaggtcagacaacagcagcaggtcagacaacagcagcaggtcagacaacagcagcaggtcagacaacagcagcaggtcaaaCAACAGCAGCAGGCTAGACAACAGCAGGTCAGacgacagcagcagTGACATGGTTCTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990029.1 True 2490 mRNA 0.56 6 87648929 87661492
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118966047 adgrb3 coding upstream 3892 87476504 ~ 87645037 (+)
LOC100135993 LOC100135993 coding upstream 275840 87370783 ~ 87373089 (+)
LOC110516875 LOC106577366 coding upstream 865212 86764287 ~ 86783717 (+)
LOC110531632 slc1a4 coding upstream 892152 86736884 ~ 86756777 (+)
LOC118966035 LOC106592896 coding upstream 1053358 86562981 ~ 86595571 (+)
LOC118966052 LOC106577294 coding downstream 259476 87920968 ~ 87928366 (+)
LOC110517253 xpo1b coding downstream 292373 87953865 ~ 88022972 (+)
LOC110531497 LOC106613810 coding downstream 543514 88205006 ~ 88226731 (+)
LOC118966060 LOC106613898 coding downstream 946690 88608182 ~ 88744413 (+)
LOC118966061 NA coding downstream 983096 88551971 ~ 88647803 (+)
G97685 NA non-coding upstream 60411 87587850 ~ 87588518 (+)
G97681 NA non-coding upstream 71085 87577330 ~ 87577844 (+)
G97664 NA non-coding upstream 102986 87545647 ~ 87545943 (+)
G97585 NA non-coding upstream 114937 87414387 ~ 87533992 (+)
G97588 NA non-coding upstream 200093 87417682 ~ 87448836 (+)
G97719 NA non-coding downstream 17496 87678988 ~ 87679262 (+)
G97723 NA non-coding downstream 32485 87693977 ~ 87701058 (+)
G97729 NA non-coding downstream 47344 87708836 ~ 87709164 (+)
G97732 NA non-coding downstream 62297 87723789 ~ 87724196 (+)
G97745 NA non-coding downstream 82922 87744414 ~ 87744944 (+)
LOC118966033 LOC106562881 other upstream 1153237 86492069 ~ 86495729 (+)
G96630 LOC106592896 other upstream 1188087 86460228 ~ 86572480 (+)
LOC118966024 LOC106562881 other upstream 1209457 86420114 ~ 86443279 (+)
G96577 NA other upstream 1235717 86411207 ~ 86413212 (+)
G96133 NA other upstream 2010874 85637747 ~ 85638055 (+)
G97752 NA other downstream 95549 87757041 ~ 87757546 (+)
G98104 NA other downstream 469546 88130944 ~ 88165405 (+)

Expression

LOC118966730 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.05.
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LOC118966730 Expression in each Bioproject

Bar chart with 8 bars.
LOC118966730 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 0.8.
End of interactive chart.

Co-expression Network