LOC118966049 (ehbp1)


Basic Information

Item Value
gene id LOC118966049
gene name ehbp1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 87664667 ~ 87746089 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988005.1
GCCCTCCTCCAGGGTAGGAAAACATTACGGACGGTGAGTGTGGACCGTGTCAGGAAAAATAGCttcttggatttttttttttactccaggGTTGGAATACTTTTTTTGTGGTGTGGGGTCTACATGGTTTGTTACAAGCACAAATCCATGTATCTGTCGTCTTGGAATTGAGTTGTAGTAATCTTCACGGAGCTTGTCTTCTCACCTGGGAGGACGCCGAGTCCCGTCAGCTGGCGGTCGGGATAACTATTTCCGCCGTGTTGTTCGTGGTATGACGGCTAGCTGATAGCTGGGACCGCTGCAATGCTAGGTGGTAATGAGCCAGATCGCTTTTTTAGCTGAAACAGTTTAAGTGGATATTAAAAGGTTGTTCGAGACAAAGGATAAGGAATACCTGGCTTTTGCATTATTCTGGAACGGTAATCTTCACTACATTTACCAGCATGCACAGCGGCAGATGTGACAGCCACCGAGGCAGAGATTCCACAAGCCTTCAATGTGtttttttctggatgtttttgaCGGCATGTCTCCTCCACCGCGAGAGAAACCGCTGACTTTTGGATTGTCCCCCATTTTCTATTTTTCTGATCAAATATTAACTATGTGTGTCGACGCAGCAGCTTGGATTTGTTTGGATACATTTAACACTTTGAAGTGAGTCGGACGGGAAAATCGACAGAAAGGAAGCACCAGTTAAAAACATAAAGGGTCCTTTTCCCCCCTAAAGAAATATCATGGCATCTGTGTGGAAAAGATTACAACGTGTGGGGAAACACGCGTCCAAGTTTCAGTTCGTGGCTTCCTATCAGGAGTTGATGGTGGAATCCACGAAGAAATGGCAACCAGACAAGCTGGTAGTGGTGTGGACTCGCAGGAGCCGACGGAAATCCTCCaaggctcacagctggcagCCAGGCATCAAGAACCCCTACCGAGGAGTGGTGGTGTGGCCTGTACCGGAAAACGTAGAAATATCTGTCACACTCTTCAAGGACCCCCACGCAGAGGAGTTTGAAGACAAGGAGTGGACGTTTGTCATAGAAAATgaGTCTCCTTCAGGTCGTAGAAAGGCTCTGGCCAGCAGCAGCATCAACATGAAGCAGTATGCCAGCCCCATGCCCACACAGACTGACGTCAAGCTCAAGTTCAAGCCCCTCTCCAAGAAGGTGGTGTCTGCCACGCTACAGTTCTCCCTCTCCTGCATCTTCCTCCGTGAGGGCAAGGCCACGtaagtccacacacacaccacacacacacaccacacacacacacacggcaaagCCACGTAAATATGCTCCCTTCACAAAGTCAACCGCCCCACCCCAAATCTAGCCCCCTAAACATCTCTCCTCCTTGAACTCGTCTTTTACTACTCtggtcttcttctctttcttccataTCAGTTCCTATCTCCGTTTCTTTCCCTTGTCTGTCTTCC
>TU108351
TTTTTTTGTGGTGTGGGGTCTACATGGTTTGTTACAAGCACAAATCCATGTATCTGTCGTCTTGGAATTGAGTTGTAGTAATCTTCACGGAGCTTGTCTTCTCACCTGGGAGGACGCCGAGTCCCGTCAGCTGGCGGTCGGGATAACTATTTCCGCCGTGTTGTTCGTGGTATGACGGCTAGCTGATAGCTGGGACCGCTGCAATGCTAGGTGGTAATGAGCCAGATCGCTTTTTTAGCTGAAACAGTTTAAGTGGATATTAAAAGGTTGTTCGAGACAAAGGATAAGGAATACCTGGCTTTTGCATTATTCTGGAACGGTAATCTTCACTACATTTACCAGCATGCACAGCGGCAGATGTGACAGCCACCGAGGCAGAGATTCCACAAGCCTTCAATGTGtttttttctggatgtttttgaCGGCATGTCTCCTCCACCGCGAGAGAAACCGCTGACTTTTGGATTGTCCCCCATTTTCTATTTTTCTGATCAAATATTAACTATGTGTGTCGACGCAGCAGCTTGGATTTGTTTGGATACATTTAACACTTTGAAGTGAGTCGGACGGGAAAATCGACAGAAAGGAAGCACCAGTTAAAAACATAAAGGGTCCTTTTCCCCCCTAAAGAAATATCATGGCATCTGTGTGGAAAAGATTACAACGTGTGGGGAAACACGCGTCCAAGTTTCAGTTCGTGGCTTCCTATCAGGAGTTGATGGTGGAATCCACGAAGAAATGGCAACCAGACAAGCTGGTAGTGGTGTGGACTCGCAGGAGCCGACGGAAATCCTCCaaggctcacagctggcagCCAGGCATCAAGAACCCCTACCGAGGAGTGGTGGTGTGGCCTGTACCGGAAAA

Function

symbol description
ehbp1 Predicted to be involved in actin cytoskeleton organization. Predicted to be part of filamentous actin. Predicted to be active in microtubule organizing center. Orthologous to human EHBP1 (EH domain binding protein 1).

NR:

description
PREDICTED: EH domain-binding protein 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988005.1 False 1441 mRNA 0.48 6 87664667 87746089
TU108351 True 867 lncRNA 0.54 4 87718161 87745989

Neighbor

gene id symbol gene type direction distance location
LOC118966042 LOC106577473 coding downstream 382428 87260566 ~ 87282239 (-)
LOC118966045 LOC106577282 coding downstream 422260 87232925 ~ 87242407 (-)
LOC118966729 LOC106577282 coding downstream 434588 87207464 ~ 87230079 (-)
LOC118966728 LOC106577282 coding downstream 459782 87167885 ~ 87204885 (-)
LOC118966727 LOC106577289 coding downstream 498133 87162277 ~ 87166534 (-)
LOC110508309 LOC106600605 coding upstream 27723 87773812 ~ 87825477 (-)
LOC110531505 LOC106597820 coding upstream 164964 87911053 ~ 87919678 (-)
LOC110531618 LOC106577176 coding upstream 283439 88029528 ~ 88053890 (-)
pex13 LOC106592834 coding upstream 308456 88054545 ~ 88065123 (-)
LOC118936685 LOC106577316 coding upstream 345955 88092044 ~ 88124727 (-)
G97934 NA non-coding downstream 13704 87650556 ~ 87650963 (-)
G97890 NA non-coding downstream 118668 87545451 ~ 87545999 (-)
G97872 NA non-coding downstream 153029 87511119 ~ 87511638 (-)
G97857 NA non-coding downstream 176636 87486900 ~ 87488031 (-)
G97848 NA non-coding downstream 191040 87473048 ~ 87473627 (-)
G97964 NA non-coding upstream 10005 87756094 ~ 87756430 (-)
G97965 NA non-coding upstream 10560 87756649 ~ 87756855 (-)
G97966 NA non-coding upstream 10941 87757030 ~ 87757369 (-)
G97973 NA non-coding upstream 21706 87767795 ~ 87768100 (-)
G97974 NA non-coding upstream 22213 87768302 ~ 87768648 (-)
G97535 NA other downstream 369668 87294357 ~ 87294999 (-)
G97308 NA other downstream 876615 86787057 ~ 86788052 (-)
G97251 NA other downstream 1041356 86566477 ~ 86623311 (-)
G97176 NA other downstream 1271578 86392561 ~ 86393089 (-)
G97047 LOC106577388 other downstream 1513328 86146009 ~ 86153321 (-)
G98510 NA other upstream 472740 88218829 ~ 88220804 (-)
G98549 NA other upstream 568187 88314276 ~ 88314696 (-)
G98616 NA other upstream 805885 88551974 ~ 88644067 (-)
G97954 NA non-coding downstream 5922 87711875 ~ 87712239 (-)
G97950 NA non-coding downstream 15055 87702822 ~ 87703106 (-)
G97948 NA non-coding downstream 24763 87693196 ~ 87693398 (-)
G97945 NA non-coding downstream 30131 87687769 ~ 87688030 (-)
G97943 NA non-coding downstream 34817 87682908 ~ 87683344 (-)

Expression


Co-expression Network