LOC118966733



Basic Information


Item Value
gene id LOC118966733
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 88159117 ~ 88164611 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>LOC118966733
ATGAGATCACCCGTAGAAAGGCAGGGACAGTTGAAAGCATACGGCACTGACCTCATCCAGGAGGAAAGGCAGGGACAGTTGAAAGCATACGGTGTTAACCTCATCCAGGAGGAAAGGCAGGGACAGTTGAAAGCATACGGCACTGACCTCATCCAGGAGGAAAGGCAGAGACAGTTGAAAGCACACGGCGCTAACCTCATCCAGGAGGAAAGGCAGGGACAGTTGAAAGCATACGGTGCTAACCTCATCCAGGAGGAAAGGCAGGGACAGTTGAAAGCATACGGTGCTAACCTCATCCAGGAGGAAAGGCAGGGACAGTTGAAAGCACACTGTGCTAACCTCATCCAGGAGGAAAGGCAGGGACAGTTGAAAGCATACGGTGTTAACCTCATCCAGGAGGAAAGGCAGGGACAGTTGAAAGCACACTGTGCTAACCTCATCCAGGAGGAAAGGCAGGGACAGTTGAAAGCATACGGTGCTAACCTCATCCAGGAGGAAAGGCAGGGACAGTTGAAAGCACACTGTGCTAACCTCATCCAGGAGGAAAGGCAGGGACAGTTGAAAGCATACGGCACTGACCTCATCCAGGAGGAAAGGCAGGGACAGTTGAAAGCATACGGCACTGACCTCATCCAGGAGGAAAGAGTAGAGCTGGCACTGCCGAAGGAGCCGAGTGCAAGAAGACAGATACCTAAACACACACGTCTCTCCTGTTCGACTGTCTCCTCTTCAGAGTCGGGCCTTTTCTCCAGGGACGAGTGTGACGGGGACCTGGGAGATCTCCAGAAGGGGGTGGGCAGCGGGGAAAAGTCCCCCGAGCCTCCAAAGGAGGACCGCCCTAAGAAGAAGCACCGGCGTAACCGCACCACCTTCACCACCTTCCAGCTCCATGAGTTGGAGAAGGCCTTTGAGAAGTCCCACTACCCTGACGTCTACAGCCGGGAGCTCCTGGCCATGAAGGTCTACCTCCTTGAGGTCCGTGTCCAGGTGTGGTTCCAGAACCGTCGGGCTAAGTGGAGACGTCAGGAGAAGATGGACTCCAACTCAACAAAGCTCCGCCACTCCCCCATGTTGTCTTTCAACCGGTCGCCCATGCCCTCCAATGTGGGGCTCATGTCCAACCCATTACCCCTGGACCCCTGGCTGGCATCACCCATGTCCAGCGGCAACCCAATGCACACTATCCCCGGATATGCAGGCCCAGGGCAGGGCCCTCACTTTCAGCCTGCCTACCCCAGCCACTCCCACTGCCACAGCCACAGCTTCCTCGACAGCCCCCCAGGACATGGCATGGTGCACCAAGGGATGGTACAGGAGATGCAGTCTGTGGCCCCGCCACTCTACCAGTGCCCCTGCAGCTTCAATGATAAGTACCCTCTGCTAAGGACCTGGAACATGGTTCCAGCATCACAGCACTGAAGTTGAAGGCTAAGGAGCACATCCATTCCATGGATAAAACCTGGAAGCCGGACATTCATTTAAGGATGGTCAACCACAACAGGTGATCACAACAAAGATATTATGTTAACAATAGTGAACTTCAACATGATCAAAACAAAGACATTCTATAAAGGATGGTCAACTACAACATAATCAAAACAAAGACATTCTATAAAGGATGGTCAACTTCAACATAATCAAAACAAAGACATTCTATAAAGGATGGTCAACTACAACATGATCAAAACAAAGACATTCTATAAAGGATGGCCAACTACAACATAATCAAAACAAAGACATTCTATAAAGGATGCTAAACTTCAACATAATCAAAACAAAGACATTCTATAAAGGATGGTCAACTTCAACATAATCAAAACAAAGACATTCTATAAAGGATGGTCAACTTCAACATAATCAAAACAAAGACAATCTATAAAGGATGGTCAACTTCAACATAATCAAAACAAAGACATTCTATAAAGGATGCTAAACTTCAACATAATCAAAACAAAGACATTCTATAAAGGATGGTCAACTACAACATGATCAAAACAAAGACATTCTATAAAGGATGATTACTTCAGCAGGTAATCAAAACATAGATATTCTATAAAGGATGATTACTTCAGCAGGTAATCAAAACAAAGACATTCTATAAAGGATGATTACTTCAGCAGGTAATCAAAACAAAGACATTCTATAAAGGATGATTACTTCAGCAGGTAATCAAAACAAAGACATTCTATAAAGGATGATTACTTCAGCAGGTAATCAAAACAAAGATATTCTGTAAAGAGGATGCTGAACTTCAGAACAAAGACATTCTGTAtagtttatacatttttttttgttaattttatttaacctttatttatttaagtcAGATAAAGAGATATGGTCAAAAGTAAAAcattatatagggattagggtgccatttaggttgTTCTGTGTATTTAAAAGGCTTATTTTCTCCATTAAGTTTTTTTTTCTTATCACTTATTTATATTTGCATATTTGTACACTGTAAATTCTTTCTGGATGTGAAATAAAATGAacttatgtttttgtttttttacgaaTAATTCAGTGGTGCTACCATATTGAAAAGTCAGTACTAGTGATCATGTGAAATGTTATCATATTGGCATTGATTAAAGATTGTTTACACCTAATATTAGCTTTGTGTTACTGTAAC

Function


NR:

description
PREDICTED: retinal homeobox protein Rx1

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
LOC118966733 True 2638 mRNA 0.44 3 88159117 88164611

Neighbor


gene id symbol gene type direction distance location
LOC100499622 alb1 coding downstream 14651 88131038 ~ 88144466 (-)
LOC118936685 LOC106577316 coding downstream 34390 88092044 ~ 88124727 (-)
pex13 LOC106592834 coding downstream 93994 88054545 ~ 88065123 (-)
LOC110531618 LOC106577176 coding downstream 105227 88029528 ~ 88053890 (-)
LOC110531505 LOC106597820 coding downstream 239439 87911053 ~ 87919678 (-)
papolg papolg coding upstream 14341 88178952 ~ 88202158 (-)
LOC118966057 NA coding upstream 63277 88224741 ~ 88230342 (-)
LOC118966058 NA coding upstream 67330 88231941 ~ 88234672 (-)
LOC118936686 LOC106594327 coding upstream 71970 88236581 ~ 88270980 (-)
LOC118966063 NA coding upstream 550262 88714598 ~ 88715755 (-)
G98478 NA non-coding downstream 44835 88111666 ~ 88114282 (-)
G98473 NA non-coding downstream 56864 88101473 ~ 88102253 (-)
G98445 NA non-coding downstream 131452 88027047 ~ 88027665 (-)
G98399 NA non-coding downstream 137310 88021032 ~ 88021807 (-)
G98444 NA non-coding downstream 139826 88018908 ~ 88019291 (-)
G98488 NA non-coding upstream 1226 88165837 ~ 88167312 (-)
G98499 NA non-coding upstream 32999 88197610 ~ 88197931 (-)
G98501 NA non-coding upstream 39679 88204290 ~ 88204609 (-)
G98502 actr2a non-coding upstream 46350 88210961 ~ 88212201 (-)
G98505 NA non-coding upstream 58720 88223331 ~ 88224678 (-)
G97535 NA other downstream 864118 87294357 ~ 87294999 (-)
G97308 NA other downstream 1371065 86787057 ~ 86788052 (-)
G97251 NA other downstream 1535806 86566477 ~ 86623311 (-)
G98510 NA other upstream 54218 88218829 ~ 88220804 (-)
G98549 NA other upstream 149665 88314276 ~ 88314696 (-)
G98616 NA other upstream 387363 88551974 ~ 88644067 (-)
LOC118966065 NA other upstream 612928 88757265 ~ 88782119 (-)
G98878 NA other upstream 911236 89075847 ~ 89076238 (-)

Expression



Co-expression Network