LOC118966058


Basic Information

Item Value
gene id LOC118966058
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 88231941 ~ 88234672 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053265.1
gacagacagacagacagttggtaGGAGATAGTGTCTAGATACCGCAGGGtggaccgacagacagacagacagacagacagacagtcggtAGGAGATAGTGTCTAGATACCGCagggtggacagacagacagttggtaGGAGATAGTGTCTAGATACCACagggtggacagacagacagacagacaggcagttgGTAGGAGATAGTGTCTAGATACCGCagggtggacagacagacagacagacagttggtaGGAGATAGTGTCTAGATAGCGCAGGGCCACagggtggacagacagacagacagacagttggtaGGAGATAGTGTCTAGATACCGCATGGgtggacagacatacagacagacagttggtAGGAGATAGTGTCTAGATACCACAGGGCCACAgggtgcacagacagacagttggtaGGAAATAAATAGACAGTGCCAGACAGACAGTTGGTAGGAAATAGATAGACAGTGCCTAGATACCTTCCTCTAAAGCCAGGAACACATTTAGAAtgagtcccaaacggcaccctattctcatagggtcctggtcaaagtagtgcactataaactgaataggctgccatttgggatgcatacttagccttttttttttttttaagtttctgTCAAATCTGAGGTGTGTCAATTTGGGATTTATCTCACCACTTGAGGTTTGAAAACGTCTGACAATCGTAGATGTTTGTGAAGCACTACTTTGAGACATGGGTGTTACTAACATTTGATACAGGATCAAAGTTGAAATGTACCTGCAGGAAATCAACTGTATATGTTTCTAATATATGAGAAAGGAAGTCAAACTCAATAGGACTTTTCTATTGAGAGAATGAGTCGAtagattatttattattattagctTATCAGCACCGTGTACTCTCACTGAGGACCTATAAGAAGCAGTTTCACCTTTGTCCCGCCCCCTTCTCACCAGTCACACACCTTTTCTCGTATGATTGACACTGCAGCTATCCACTCCCAACACTCCATCCACAacgttaaagcccaacactaatTACAAGAGGACTGGGGTCCGTTCAAGAGGGGGCGATGTTCTGACAAAATGTTTCTGATTTAGAAATGAGACGAGTGGACATGATTCTGTCCCAGAGGCCAGTCTATTCTACACAAGGTAGAAGTATTCATTAGGTACTGAACGGAAGAACAACAGACTGCAACGGGAAGAGACTACCTGGACTCCAATAAGAAGCGTTTTTTTAAACGTTTTTAAAAACGTTTTCAGTTGCATGTCCTAATGAGTGCAACCCTGTCAACTAACGTGTCCATTTGTTACAATGCTGCGTTGTCAGGTATGCAATGTCAATGCTCCTCTCAAACCTAAAGGGTTGAATGAATGTGTTGTCAGGTATGTCATGTCAATGCTGTGTTGTCAGGTATGCAATGTCAATGCTCCTATCAAACCTAAAGGGTTGAATGAATGTGTTGTCAAGTATGTCATGTCAATGCTCCTATCAAACCTAAAGGGTTGAATGAATGTGTTGTCAGGTATGTCATGTCAATGCTGTGTTGTCAGGTATGCAATGTCAATGCTCCTATCAAACCTAAAGGGTTGAATGAATGTGTTGTCAAGTATGTCATGTCAATGCTCCTATCAAACCTAAAGGGTTGAATGAATGTGTTGTCAGGTATGTCATGTCAATGCTCCTATCAAACCTAAAGGGTTGAATGAATGTGTTGTCAGGTATGTCATGTCAATGCTCCTATCAAACCTAAAGGGTTGAATGAATGTGTTGTCAGGTATGCAATGTCAATGCTCCTCTCAAACCTAAAGGGTTGAATGAATGTGTTGTCCCATAGCAATACAATGCTGTGTTGTCAGGTATGCAATGTCAATGCTCCTCTCAAACCTAAAGGGTTGAATGAATGTGTTGTCAGGTATGTCATGTCAATGCTCCTCTCAAACCTAAATGGTTGAATGAATGTGTTGTCAGGTATGTCATGTCAATGCTCCTATCAAACCTAAAGGGTTGAATGAATGTGTTGTCCCATAGCGTGTTGCTGTAGAAGGTGATTTGACCCATCTGTTGTTGTCTGAAAGCTTCTAATGGGGAAGGTTGTTTGGTAACACGTTACGTAAGAGCCAACTGGTATAATGCCTTATAACTTGTTATAAGCATGTCTGCACCTTTTATAAAAGTGTCACAGGCA
>TU109143
agacagacagacagacagttggtaGGAGATAGTGTCTAGATACCACagggtggacagacagacagacagacaggcagttgGTAGGAGATAGTGTCTAGATACCGCagggtggacagacagacagttggtaGGAGATAGTGTCTTGATACCGCagggtggacagacagacagttggtaGGAGATAGTGTCTTGATACCGCagggtggacagacagacagttggtaGGAGATAGTGTCTAGATACCGCagggtggacagacagacagacagacagacagacagttggtaGGAGATAGTGTCTAGATACCGCAGGGCCACagggtggacagacagacagacagttggtaGGAGATAGTGTCTAGATACCGCagggCCACagggtggacagacagacagacagacagttggtaGGAGATAGTGTCTAGATACCGCATGGgtggacagacatacagacagacagttggtAGGAGATAGTGTCTAGATACCACAGGGCCACAgggtgcacagacagacagttggtaGGAAATAAATAGACAGTGCCAGACAGACAGTTGGTAGGAAATAGATAGACAGTGCCTAGATACCTTCCTCTAAAGCCAGGAACACATTTAGAAtgagtcccaaacggcaccctattctcatagggtcctggtcaaagtagtgcactataaactgaataggctgccatttgggatgcatacttagccttttttttttttttaagtttctgTCAAATCTGAGGTGTGTCAATTTGGGATTTATCTCACCACTTGAGGTTTGAAAACGTCTGACAATCGTAGATGTTTGTGAAGCACTACTTTGAGACATGGGTGTTACTAACATTTGATACAGGATCAAAGTTGAAATGTACCTGCAGGAAATCAACTGTATATGTTTCTAATATATGAGAAAGGAAGTCAAACTCAATAGGACTTTTCTATTGAGAGAATGAGTCGAtagattatttattattattagctTATCAGCACCGTGTACTCTCACTGAGGACCTATAAGAAGCAGTTTCACCTTTGTCCCGCCCCCTTCTCACCAGTCACACACCTTTTCTCGTATGATTGACACTGCAGCTATCCACTCCCAACACTCCATCCACAacgttaaagcccaacactaatTACAAGAGGACTGGGGTCCGTTCAAGAGGGGGCGATGTTCTGACAAAATGTTTCTGATTTAGAAATGAGACGAGTGGACATGATTCTGTCCCAGAGGCCAGTCTATTCTACACAAGGTAGAAGTATTCATTAGGTACTGAACGGAAGAACAACAGACTGCAACGGGAAGAGACTACCTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053265.1 False 2192 mRNA 0.43 2 88231941 88234270
TU109143 True 1315 lncRNA 0.50 2 88233051 88234672

Neighbor

gene id symbol gene type direction distance location
LOC118966057 NA coding downstream 1599 88224741 ~ 88230342 (-)
papolg papolg coding downstream 29783 88178952 ~ 88202158 (-)
LOC118966733 NA coding downstream 67330 88159117 ~ 88164611 (-)
LOC100499622 alb1 coding downstream 87475 88131038 ~ 88144466 (-)
LOC118936685 LOC106577316 coding downstream 107214 88092044 ~ 88124727 (-)
LOC118936686 LOC106594327 coding upstream 2311 88236581 ~ 88270980 (-)
LOC118966063 NA coding upstream 480603 88714598 ~ 88715755 (-)
LOC118966064 NA coding upstream 482048 88716318 ~ 88717077 (-)
LOC118966065 NA coding upstream 544047 88757265 ~ 88782119 (-)
ghitm LOC100136239 coding upstream 988880 89223150 ~ 89270371 (-)
G98505 NA non-coding downstream 7263 88223331 ~ 88224678 (-)
G98502 actr2a non-coding downstream 19740 88210961 ~ 88212201 (-)
G98501 NA non-coding downstream 27332 88204290 ~ 88204609 (-)
G98499 NA non-coding downstream 34010 88197610 ~ 88197931 (-)
G98514 NA non-coding upstream 3730 88238000 ~ 88238331 (-)
G98522 NA non-coding upstream 19476 88253746 ~ 88254060 (-)
G98528 NA non-coding upstream 29203 88263473 ~ 88264499 (-)
G98532 NA non-coding upstream 34733 88269003 ~ 88269227 (-)
G98539 NA non-coding upstream 49941 88284211 ~ 88287080 (-)
G98510 NA other downstream 11137 88218829 ~ 88220804 (-)
pex13 LOC106592834 other downstream 167027 88054545 ~ 88065123 (-)
LOC110531505 LOC106597820 other downstream 316041 87911053 ~ 87919678 (-)
G97535 NA other downstream 936942 87294357 ~ 87294999 (-)
G97308 NA other downstream 1443889 86787057 ~ 86788052 (-)
G98549 NA other upstream 80006 88314276 ~ 88314696 (-)
G98616 NA other upstream 317704 88551974 ~ 88644067 (-)
G98878 NA other upstream 841577 89075847 ~ 89076238 (-)

Expression


Co-expression Network