LOC118966065


Basic Information

Item Value
gene id LOC118966065
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 88757265 ~ 88782119 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053273.1
AACAGCAGACAGAGGTCTCATTTATCCTCCTCTCACTGTGTCCTTTTCTAttttttctctccatccctccttcactccTCTTTTGTTTTCACAGCAGTGAAGAAACGGTTGCCTTtttcccccctttctcctccttttATTTTCTCCCCTTCTTTTCATGGTGGTGGCAGGCGCACTTTGGCCATCCCAGGTACTGGCTGGAAACAGTGAGGATTCTGGGAGATGGTGAGATGAGGCTTTAATGAGAATGAGGCCTTCCCAGCTGGAGAGAAAAATATATGCAAATGAGATGTGTGAGCCAAGAGGACACCGGGATGAAGAACGTGTGGCAAACAGCAAGGGGCGAACTCCAGCTGACTACGGTCGCCTCCAAGGAGAGGAAGACGATCTGACGAATGGGAatgacagggaggggaggggacacaCAGGGCCCCGCCTGCCGTCTGTCCTAGCAGTCCTGATGACTTCTCCCTTGATAATCAGCTGCTATGGGCCAGGGATAATTCACCTGTCAATGCCACCTACTGAGGCTGGAACAAGGATTGAA
>TU109343
ACAGCAGTGAAGAAACGGTTGCCTTtttcccccctttctcctccttttATTTTCTCCCCTTCTTTTCATGGTGGTGGCAGGCGCACTTTGGCCATCCCAGGTACTGGCTGGAAACAGTGAGGATTCTGGGAGATGGTGAGATGAGGCTTTAATGAGAATGAGGCCTTCCCAGCTGGAGAGAAAAATATATGCAAATGAGATGTGTGAGCCAAGAGGACACCGGGATGAAGAACGTGTGGCAAACAGCAAGGGGCGAACTCCAGCTGACTACGGTCGCCTCCAAGGAGAGGAAGACGATCTGACGAATGggaggggaggggacacaCAGGGCCCCGCCTGCCGTCTGTCCTAGCAGTCCTGATGACTTCTCCCTTGATAATCAGCTGCTATGGGCCAGGGATAATTCACCTGTCAATGCCACCTACTGAGGCTGGAACAAGGATTGAACATGGATACACCATTCCACCAACGCCAAAACGGTGTCATTCATTTAGACAAAGACCATGGGAAAAATGGGAATGTGAGAGGAAAGAGATTGGGCGACagatagagagcgagagtgagacagacagagagagagagagacagagagagagagagagagagacagagagag
>TU109341
ACAGCAGTGAAGAAACGGTTGCCTTtttcccccctttctcctccttttATTTTCTCCCCTTCTTTTCATGGTGGTGGCAGGCGCACTTTGGCCATCCCAGGTACTGGCTGGAAACAGTGAGGATTCTGGGAGATGGTGAGATGAGGCTTTAATGAGAATGAGGCCTTCCCAGCTGGAGAGAAAAATATATGCAAATGAGATGTGTGAGCCAAGAGGACACCGGGATGAAGAACGTGTGGCAAACAGCAAGGGGCGAACTCCAGCTGACTACGGTCGCCTCCAAGGAGAGGAAGACGATCTGACGAATGggaggggaggggacacaCAGGGCCCCGCCTGCCGTCTGTCCTAGCAGTCCTGATGACTTCTCCCTTGATAATCAGCTGCTATGGGCCAGGGATAATTCACCTGTCAATGCCACCTACTGAGGCTGGAACAAGGATTGAACATGGATACACCATTCCACCAACGCCAAAACGGTGTCATTCATTTAGACAAAGACCATGGGAAAAATGGGAATGTGAGAGGAAAGAGATTGGGCGACagatagagagcgagagtgagacagacagagagagagagagacagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaagaaagaaagaaagaaagaaagataaagagagagagagagacagagagataaagagagagagagacagagagaagagagagagagagagagagagagagagatgcatttcCTCCAGGTTCATTTTGTTTAAAAGTCTAAGAATGGAACTAAAAAATGAGAAGAACTTTACAAATACCACAGTGGCAACATGTGTGTTGGAAAGTGTTTAAATGGAAATAAACATGTTCTCATTCTGAGTAATGTACAGCAACAATGTTAGTTTATTTTATGAATTTGAGACTCAATAAATTCCAGTTT
>TU109340
ACAGCAGTGAAGAAACGGTTGCCTTtttcccccctttctcctccttttATTTTCTCCCCTTCTTTTCATGGTGGTGGCAGGCGCACTTTGGCCATCCCAGGTACTGGCTGGAAACAGTGAGGATTCTGGGAGATGGTGAGATGAGGCTTTAATGAGAATGAGGCCTTCCCAGCTGGAGAGAAAAATATATGCAAATGAGATGTGTGAGCCAAGAGGACACCGGGATGAAGAACGTGTGGCAAACAGCAAGGGGCGAACTCCAGCTGACTACGGTCGCCTCCAAGGAGAGGAAGACGATCTGACGAATGggaggggaggggacacaCAGGGCCCCGCCTGCCGTCTGTCCTAGCAGTCCTGATGACTTCTCCCTTGATAATCAGCTGCTATGGGCCAGGGATAATTCACCTGTCAATGCCACCTACTGAGGCTGGAACAAGGATTGAACATGGATACACCATTCCACCAACGCCAAAACGGTGTCATTCATTTAGACAAAGACCATGGGAAAAATGGGAATGTGAGAGGAAAGAGATTGGGCGACagatagagagcgagagtgagacagacagagagagagagagcgacagagagagagagagtgagacagacaaagagagagacagagagagagaaagaaagagagagagacaaagagagagagacagagagaaagagagagagagagagagagagagacacagagagagagagagacagggacagagagagacagagagataaagagagagagagacagagagagagatagagagagagagagagacagggacagagagagacagagagaaagagagagagagacagagagagaacagagagcgagagacagagagaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053273.1 False 547 mRNA 0.51 2 88778317 88782119
TU109343 False 616 lncRNA 0.35 3 88757265 88782029
TU109341 False 944 TUCP 0.46 3 88777539 88782029
TU109340 True 860 TUCP 0.43 2 88777904 88782029

Neighbor

gene id symbol gene type direction distance location
LOC118966064 NA coding downstream 61240 88716318 ~ 88717077 (-)
LOC118966063 NA coding downstream 62562 88714598 ~ 88715755 (-)
LOC118936686 LOC106594327 coding downstream 507337 88236581 ~ 88270980 (-)
LOC118966058 NA coding downstream 544047 88231941 ~ 88234672 (-)
LOC118966057 NA coding downstream 547975 88224741 ~ 88230342 (-)
ghitm LOC100136239 coding upstream 441031 89223150 ~ 89270371 (-)
fbxl15 fbx37 coding upstream 1015793 89797912 ~ 89803793 (-)
LOC118966075 LOC106577395 coding upstream 1118219 89900338 ~ 89902518 (-)
LOC110519290 cj104 coding upstream 1130179 89912298 ~ 89920458 (-)
LOC118936688 LOC106577347 coding upstream 1327177 90109296 ~ 90115842 (-)
G98689 NA non-coding downstream 29157 88748936 ~ 88749160 (-)
G98688 NA non-coding downstream 32307 88745730 ~ 88746010 (-)
G98675 NA non-coding downstream 67214 88708981 ~ 88711103 (-)
G98646 NA non-coding downstream 80566 88696267 ~ 88697751 (-)
G98713 NA non-coding upstream 6972 88789091 ~ 88838601 (-)
G98731 NA non-coding upstream 61166 88843285 ~ 88845344 (-)
G98738 NA non-coding upstream 73217 88855336 ~ 88855742 (-)
G98744 NA non-coding upstream 81469 88863588 ~ 88864800 (-)
G98750 NA non-coding upstream 90215 88872334 ~ 88872577 (-)
G98616 NA other downstream 134250 88551974 ~ 88644067 (-)
G98549 NA other downstream 463621 88314276 ~ 88314696 (-)
G98510 NA other downstream 557513 88218829 ~ 88220804 (-)
pex13 LOC106592834 other downstream 713403 88054545 ~ 88065123 (-)
LOC110531505 LOC106597820 other downstream 862417 87911053 ~ 87919678 (-)
G98878 NA other upstream 293728 89075847 ~ 89076238 (-)
G99035 NA other upstream 505095 89287214 ~ 89290056 (-)
G99595 NA other upstream 1175273 89957392 ~ 89957916 (-)
G99602 NA other upstream 1181754 89963873 ~ 89964205 (-)

Expression


Co-expression Network