ghitm (LOC100136239)


Basic Information

Item Value
gene id ghitm
gene name LOC100136239
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 89223150 ~ 89270371 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979551.1
AGAACGTTCACGAAATTGCGTCATATTACGTCGGTGAAGTGCGCACTTATCTCAAGGAAGGTGAACAGAACTCTAGATACACGCTTGTTGATAGAAATCGGGACTGTTTTCAGATTTGTAATTCCAGAGCTTCATCATGACCATGTTGGTGAGGCTAGCATGCCTGCGCAGTCTCCCTGTGTCCGGGCTGCGTCCTGTGTTCACCCAGGGCTCTCCAGCCCTGAGGAGCTCCACCCTGAAGAGCTGCCCGCCCCTCCTCAAGGGCCACCAGGGCTATTCCACCAAATCCAGATTTGGTTTCCGTCGTGGGAAAACGGCCAAGGACCAGCTCCAACAGGCAGCTTTCGAACCAGCAACTGATACGGCCATCAGAATGGATAACATGGGCAGGATGTTCCTGGCTGGAGGGGCTGCTGTAGGCCTGGGAGCTCTGTGCTACTACGGACTAGGCATGTCCAATGAGATCGGAGCCATCGAGAGGGCAGTTATCTGGCCCCAGTACGTGAAGGACAGGATCCACTCGACCTACATGTACTTTGCAGGCAGTGTGGGGATGACAGCTCTGTCGGCTGTGGCCGTCAGCAGGACCCCAGCCCTCATGGGTGTCATGATGAGAGGATCCTGGCTGGCTATTGGAGCTACCTTTGCAGCCATGATTGGAGCAGGCATGCTGGTCAGATCTATCTCTTATGACCAGAGCCCAGGAGCCAAACATCTAGCCTGGATGCTACATGCAGGTGTGATGGGAGCGGTCATAGCCCCCATGACTCTGCTCGGTGGGCCCCTGATGATGAGGGCAGCCTGGTACACAGCGGGCATAGTGGGGGGTCTGTCCACCGTGGCCATGTGTGCCCCCAGTGAGAAGTTCCTCAACATGGGAGGACCCCTGGCGGTGGGCTTCGGAGTCGTCTTCGCCTCTTCCATCGgCTCAATGTTCCTGCCCCCTACCTCAGCGATGGGAGCAGGCCTCTACTCCATCGCTATCTACGGAGGTCTGGTCCTCTTCAGCATGTTCCTGCTCTACGACACCCAGAAGGTCATCAAGAGGGCGGAGACGTACCCCATGTACGGGATGCAGAAATACGACCCCATCAACTCGTGCATGGGGATCTACATGGACACTCTGAACATCTTCATGAGGATGGTGATGATTCTGTCTGGCGGAGGAAACAGAAAGaaatgaagacgttccagtctgacTTTACATCTACGTTAAACCTTCAACCTTCCACACAGTTGAACAACAACGATATGTTCTACAATTAGCACCGTACATCAGCTGTTACCTACTTTTTAGTTTGAAAACGTATTTTCAACTGACACAATAAAAAAATGTGTTGCTTTTGTGTGAAGAAGAGGATTGCAATTTCCTAGAGCATATTGACACTCATCCAAGTAAGGACGACATCTTGCTCTGTTCCATATTCAGAAtgttaaaaaatatgtttttgtcttGATTCTGAGGGAGGCATATTTTTATTTAAAGTCAGGATTGTTAATGGGGATATCTGTCAACATCACAGATTGTCCCTCAGTCTCATCCTCTTAATTGTTcctttatattttatatatatttattttcacttGAGGTGGGTGTTCCCATTCCTGGCCAGCAAGACAAAGTTGGGCAAACATCATATTTATATCATCCCTCAACCTTGTACTTCTTCTAGCCTCCACACATACAATACGTGTGACTATGTGCTTAACTCCTTGACAGAGACTGAACTTGGATGTGTTGTATCGGGCCGAGCCTTGGATGTGTTGTATCGGGCCGAGCCTTGGATGGGTGGTGCTTTGACGTGTTGTTTCTGTTAGAATGAAAGTGATTGAATGTGATCAACGCTGTTCTGGTATCATTCAATAAAAGTGAAAGAGAATGCA
>XM_036979087.1
ATGACGACATCTGTCAGAACGTTCACGAAATTGCGTCATATTACGTCGGTGAAGTGCGCACTTATCTCAAGGAAGGTGAACAGAACTCTAGATACACGCTTGATTTGTAATTCCAGAGCTTCATCATGACCATGTTGGTGAGGCTAGCATGCCTGCGCAGTCTCCCTGTGTCCGGGCTGCGTCCTGTGTTCACCCAGGGCTCTCCAGCCCTGAGGAGCTCCACCCTGAAGAGCTGCCCGCCCCTCCTCAAGGGCCACCAGGGCTATTCCACCAAATCCAGATTTGGTTTCCGTCGTGGGAAAACGGCCAAGGACCAGCTCCAACAGGCAGCTTTCGAACCAGCAACTGATACGGCCATCAGAATGGATAACATGGGCAGGATGTTCCTGGCTGGAGGGGCTGCTGTAGGCCTGGGAGCTCTGTGCTACTACGGACTAGGCATGTCCAATGAGATCGGAGCCATCGAGAGGGCAGTTATCTGGCCCCAGTACGTGAAGGACAGGATCCACTCGACCTACATGTACTTTGCAGGCAGTGTGGGGATGACAGCTCTGTCGGCTGTGGCCGTCAGCAGGACCCCAGCCCTCATGGGTGTCATGATGAGAGGATCCTGGCTGGCTATTGGAGCTACCTTTGCAGCCATGATTGGAGCAGGCATGCTGGTCAGATCTATCTCTTATGACCAGAGCCCAGGAGCCAAACATCTAGCCTGGATGCTACATGCAGGTGTGATGGGAGCGGTCATAGCCCCCATGACTCTGCTCGGTGGGCCCCTGATGATGAGGGCAGCCTGGTACACAGCGGGCATAGTGGGGGGTCTGTCCACCGTGGCCATGTGTGCCCCCAGTGAGAAGTTCCTCAACATGGGAGGACCCCTGGCGGTGGGCTTCGGAGTCGTCTTCGCCTCTTCCATCGgCTCAATGTTCCTGCCCCCTACCTCAGCGATGGGAGCAGGCCTCTACTCCATCGCTATCTACGGAGGTCTGGTCCTCTTCAGCATGTTCCTGCTCTACGACACCCAGAAGGTCATCAAGAGGGCGGAGACGTACCCCATGTACGGGATGCAGAAATACGACCCCATCAACTCGTGCATGGGGATCTACATGGACACTCTGAACATCTTCATGAGGATGGTGATGATTCTGTCTGGCGGAGGAAACAGAAAGaaatgaagacgttccagtctgacTTTACATCTACGTTAAACCTTCAACCTTCCACACAGTTGAACAACAACGATATGTTCTACAATTAGCACCGTACATCAGCTGTTACCTACTTTTTAGTTTGAAAACGTATTTTCAACTGACACAATAAAAAAATGTGTTGCTTTTGTGTGAAGAAGAGGATTGCAATTTCCTAGAGCATATTGACACTCATCCAAGTAAGGACGACATCTTGCTCTGTTCCATATTCAGAAtgttaaaaaatatgtttttgtcttGATTCTGAGGGAGGCATATTTTTATTTAAAGTCAGGATTGTTAATGGGGATATCTGTCAACATCACAGATTGTCCCTCAGTCTCATCCTCTTAATTGTTcctttatattttatatatatttattttcacttGAGGTGGGTGTTCCCATTCCTGGCCAGCAAGACAAAGTTGGGCAAACATCATATTTATATCATCCCTCAACCTTGTACTTCTTCTAGCCTCCACACATACAATACGTGTGACTATGTGCTTAACTCCTTGACAGAGACTGAACTTGGATGTGTTGTATCGGGCCGAGCCTTGGATGTGTTGTATCGGGCCGAGCCTTGGATGGGTGGTGCTTTGACGTGTTGTTTCTGTTAGAATGAAAGTGATTGAATGTGATCAACGCTGTTCTGGTATCATTCAATAAAAGTGAAAGAGAATGCA
>XM_036978480.1
ATTCGTCCCTTGATTATGACGACATCTGTCAGAACGTTCACGAAATTGCGTCATATTACGTCGGTGAAGTGCGCACTTATCTCAAGGAAGGTGAACAGAACTCTAGATACACGCTTGAGCTTCATCATGACCATGTTGGTGAGGCTAGCATGCCTGCGCAGTCTCCCTGTGTCCGGGCTGCGTCCTGTGTTCACCCAGGGCTCTCCAGCCCTGAGGAGCTCCACCCTGAAGAGCTGCCCGCCCCTCCTCAAGGGCCACCAGGGCTATTCCACCAAATCCAGATTTGGTTTCCGTCGTGGGAAAACGGCCAAGGACCAGCTCCAACAGGCAGCTTTCGAACCAGCAACTGATACGGCCATCAGAATGGATAACATGGGCAGGATGTTCCTGGCTGGAGGGGCTGCTGTAGGCCTGGGAGCTCTGTGCTACTACGGACTAGGCATGTCCAATGAGATCGGAGCCATCGAGAGGGCAGTTATCTGGCCCCAGTACGTGAAGGACAGGATCCACTCGACCTACATGTACTTTGCAGGCAGTGTGGGGATGACAGCTCTGTCGGCTGTGGCCGTCAGCAGGACCCCAGCCCTCATGGGTGTCATGATGAGAGGATCCTGGCTGGCTATTGGAGCTACCTTTGCAGCCATGATTGGAGCAGGCATGCTGGTCAGATCTATCTCTTATGACCAGAGCCCAGGAGCCAAACATCTAGCCTGGATGCTACATGCAGGTGTGATGGGAGCGGTCATAGCCCCCATGACTCTGCTCGGTGGGCCCCTGATGATGAGGGCAGCCTGGTACACAGCGGGCATAGTGGGGGGTCTGTCCACCGTGGCCATGTGTGCCCCCAGTGAGAAGTTCCTCAACATGGGAGGACCCCTGGCGGTGGGCTTCGGAGTCGTCTTCGCCTCTTCCATCGgCTCAATGTTCCTGCCCCCTACCTCAGCGATGGGAGCAGGCCTCTACTCCATCGCTATCTACGGAGGTCTGGTCCTCTTCAGCATGTTCCTGCTCTACGACACCCAGAAGGTCATCAAGAGGGCGGAGACGTACCCCATGTACGGGATGCAGAAATACGACCCCATCAACTCGTGCATGGGGATCTACATGGACACTCTGAACATCTTCATGAGGATGGTGATGATTCTGTCTGGCGGAGGAAACAGAAAGaaatgaagacgttccagtctgacTTTACATCTACGTTAAACCTTCAACCTTCCACACAGTTGAACAACAACGATATGTTCTACAATTAGCACCGTACATCAGCTGTTACCTACTTTTTAGTTTGAAAACGTATTTTCAACTGACACAATAAAAAAATGTGTTGCTTTTGTGTGAAGAAGAGGATTGCAATTTCCTAGAGCATATTGACACTCATCCAAGTAAGGACGACATCTTGCTCTGTTCCATATTCAGAAtgttaaaaaatatgtttttgtcttGATTCTGAGGGAGGCATATTTTTATTTAAAGTCAGGATTGTTAATGGGGATATCTGTCAACATCACAGATTGTCCCTCAGTCTCATCCTCTTAATTGTTcctttatattttatatatatttattttcacttGAGGTGGGTGTTCCCATTCCTGGCCAGCAAGACAAAGTTGGGCAAACATCATATTTATATCATCCCTCAACCTTGTACTTCTTCTAGCCTCCACACATACAATACGTGTGACTATGTGCTTAACTCCTTGACAGAGACTGAACTTGGATGTGTTGTATCGGGCCGAGCCTTGGATGTGTTGTATCGGGCCGAGCCTTGGATGGGTGGTGCTTTGACGTGTTGTTTCTGTTAGAATGAAAGTGATTGAATGTGATCAACGCTGTTCTGGTATCATTCAATAAAAGTGAAAGAGAATGCA
>NM_001124503.2
GATTTGTAATTCCAGAGCTTCATCATGACCATGTTGGTGAGGCTAGCATGCCTGCGCAGTCTCCCTGTGTCCGGGCTGCGTCCTGTGTTCACCCAGGGCTCTCCAGCCCTGAGGAGCTCCACCCTGAAGAGCTGCCCGCCCCTCCTCAAGGGCCACCAGGGCTATTCCACCAAATCCAGATTTGGTTTCCGTCGTGGGAAAACGGCCAAGGACCAGCTCCAACAGGCAGCTTTCGAACCAGCAACTGATACGGCCATCAGAATGGATAACATGGGCAGGATGTTCCTGGCTGGAGGGGCTGCTGTAGGCCTGGGAGCTCTGTGCTACTACGGACTAGGCATGTCCAATGAGATCGGAGCCATCGAGAGGGCAGTTATCTGGCCCCAGTACGTGAAGGACAGGATCCACTCGACCTACATGTACTTTGCAGGCAGTGTGGGGATGACAGCTCTGTCGGCTGTGGCCGTCAGCAGGACCCCAGCCCTCATGGGTGTCATGATGAGAGGATCCTGGCTGGCTATTGGAGCTACCTTTGCAGCCATGATTGGAGCAGGCATGCTGGTCAGATCTATCTCTTATGACCAGAGCCCAGGAGCCAAACATCTAGCCTGGATGCTACATGCAGGTGTGATGGGAGCGGTCATAGCCCCCATGACTCTGCTCGGTGGGCCCCTGATGATGAGGGCAGCCTGGTACACAGCGGGCATAGTGGGGTCTGTCCACCGTGGCCATGTGTGCCCCCAGTGAGAAGTTCCTCAACATGGGAGGACCCCTGGCGGTGGGCTTCGGAGTCGTCTTCGCCTCTTCCATCGgCTCAATGTTCCTGCCCCCTACCTCAGCGATGGGAGCAGGCCTCTACTCCATCGCTATCTACGGAGGTCTGGTCCTCTTCAGCATGTTCCTGCTCTACGACACCCAGAAGGTCATCAAGAGGGCGGAGACGTACCCCATGTACGGGATGCAGAAATACGACCCCATCAACTCGTGCATGGGGATCTACATGGACACTCTGAACATCTTCATGAGGATGGTGATGATTCTGTCTGGCGGAGGAAACAGAAAGaaatgaagacgttccagtctgacTTTACATCTACGTTAAACCTTCAACCTTCCACACAGTTGAACAACAACGATATGTTCTACAATTAGCACCGTACATCAGCTGTTACCTACTTTTTAGTTTGAAAACGTATTTTCAACTGACACAATAAAAAAATGTGTTGCTTTTG
>TU109710
gtCTCCACCTCCTCTATCGgCTCAATGTTCCTGCCCCCTACCTCAGCGATGGGAGCAGGCCTCTACTCCATCGCTATCTACGGAGGTCTGGTCCTCTTCAGCATGTTCCTGCTCTACGACACCCAGAAGGTCATCAAGAGGGCGGAGACGTACCCCATGTACGGGATGCAGAAATACGACCCCATCAACTCGTGCATGGGGATCTACATGGACACTCTGAACATCTTCATGAGGATGGTGATGATTCTGTCTGGCGGAGGAAACAGAAAGaaatgaagacgttccagtctgacTTTACATCTACGTTAAACCTTCAACCTTCCACACAGTTGAACAACAACGATATGTTCTACAATTAGCACCGTACATCAGCTGTTACCTACTTTTTAGTTTGAAAACGTATTTTCAACTGACACAATAAAAAAATGTGTTGCTTTTGTGTGAAGAAGAGGATTGCAATTTCCTAGAGCATATTGACACTCATCCAAGTAAGGACGACATCTTGCTCTGTTCCATATTCAGAAtgttaaaaaatatgtttttgtcttGATTCTGAGGGAGGCATATTTTTATTTAAAGTCAGGATTGTTAATGGGGATATCTGTCAACATCACAGATTGTCCCTCAGTCTCATCCTCTTAATTGTTcctttatattttatatatatttattttcacttGAGGTGGGTGTTCCCATTCCTGGCCAGCAAGACAAAGTTGGGCAAACATCATATTTATATCATCCCTCAACCTTGTACTTCTTCTAGCCTCCACACATACAATACGTGTGACTATGTGCTTAACTCCTTGACAGAGACTGAACTTGGATGTGTTGTATCGGGCCGAGCCTTGGATGTGTTGTATCGGGCCGAGCCTTGGATGGGTGGTGCTTTGACGTGTTGTTTCTGTTAGAATGAAAGTGATTGAATGTGATCAACGCTGTTCTGGTATCATTCAATAAAAGTGAAAGAGAATGCA

Function

NR:

description
PREDICTED: growth hormone-inducible transmembrane protein-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979551.1 False 1884 mRNA 0.49 9 89223150 89270341
XM_036979087.1 False 1873 mRNA 0.49 9 89223150 89270356
XM_036978480.1 False 1874 mRNA 0.50 9 89223150 89270371
NM_001124503.2 False 1232 mRNA 0.54 9 89223688 89267187
TU109710 True 977 TUCP 0.43 3 89223150 89252088

Neighbor

gene id symbol gene type direction distance location
LOC118966065 NA coding downstream 441031 88757265 ~ 88782119 (-)
LOC118966064 NA coding downstream 506073 88716318 ~ 88717077 (-)
LOC118966063 NA coding downstream 507395 88714598 ~ 88715755 (-)
LOC118936686 LOC106594327 coding downstream 952170 88236581 ~ 88270980 (-)
LOC118966058 NA coding downstream 988880 88231941 ~ 88234672 (-)
fbxl15 fbx37 coding upstream 527541 89797912 ~ 89803793 (-)
LOC118966075 LOC106577395 coding upstream 629967 89900338 ~ 89902518 (-)
LOC110519290 cj104 coding upstream 641927 89912298 ~ 89920458 (-)
LOC118936688 LOC106577347 coding upstream 838925 90109296 ~ 90115842 (-)
LOC110515022 LOC106560865 coding upstream 846130 90116501 ~ 90141830 (-)
G98971 NA non-coding downstream 5875 89216910 ~ 89217275 (-)
G98968 NA non-coding downstream 7111 89215390 ~ 89216039 (-)
G98967 NA non-coding downstream 9275 89213655 ~ 89213875 (-)
G98966 NA non-coding downstream 11490 89211460 ~ 89211660 (-)
G98962 NA non-coding downstream 15273 89207546 ~ 89207877 (-)
G99045 NA non-coding upstream 23778 89294149 ~ 89294377 (-)
G99057 NA non-coding upstream 41892 89312263 ~ 89315981 (-)
G99058 NA non-coding upstream 45919 89316290 ~ 89317055 (-)
G99063 NA non-coding upstream 56587 89326958 ~ 89329993 (-)
G99069 NA non-coding upstream 67183 89337554 ~ 89337791 (-)
G98878 NA other downstream 146912 89075847 ~ 89076238 (-)
G98616 NA other downstream 579083 88551974 ~ 88644067 (-)
G98549 NA other downstream 908454 88314276 ~ 88314696 (-)
G98510 NA other downstream 1002346 88218829 ~ 88220804 (-)
G99035 NA other upstream 16843 89287214 ~ 89290056 (-)
G99595 NA other upstream 687021 89957392 ~ 89957916 (-)
G99602 NA other upstream 693502 89963873 ~ 89964205 (-)
G100197 NA other upstream 1357162 90625080 ~ 90858972 (-)
LOC110516041 jakmip3 other upstream 1712364 90982735 ~ 91072716 (-)

Expression


Co-expression Network