Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110514249 |
| gene name | LOC101463634 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 89588365 ~ 89663139 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| paired box protein Pax-2a isoform X15 |
| id | description |
|---|---|
| K15608 | PAX2; paired box protein 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036988262.1 | False | 5133 | mRNA | 0.45 | 11 | 89588365 | 89663139 |
| XM_036988276.1 | False | 5121 | mRNA | 0.45 | 11 | 89588365 | 89663139 |
| XM_036988279.1 | False | 5112 | mRNA | 0.45 | 10 | 89588365 | 89663139 |
| XM_036988283.1 | False | 5100 | mRNA | 0.45 | 10 | 89588365 | 89663139 |
| XM_036988284.1 | False | 5152 | mRNA | 0.45 | 11 | 89588365 | 89663139 |
| XM_036988287.1 | False | 5119 | mRNA | 0.45 | 10 | 89588365 | 89663139 |
| XR_005053281.1 | True | 4908 | mRNA | 0.45 | 12 | 89588365 | 89663139 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110510724 | chst3 | coding | upstream | 299741 | 89270808 ~ 89288624 (+) |
| LOC118966069 | NA | coding | upstream | 567765 | 89018704 ~ 89020600 (+) |
| si:dkey-78p8.1 | LOC106577363 | coding | upstream | 570095 | 89007456 ~ 89018305 (+) |
| LOC110518194 | LOC106577299 | coding | upstream | 595905 | 88981098 ~ 88992460 (+) |
| LOC118966734 | NA | coding | upstream | 758113 | 88829551 ~ 88830252 (+) |
| gpx9 | LOC106577309 | coding | downstream | 140769 | 89803908 ~ 89806519 (+) |
| LOC110531574 | LOC106577308 | coding | downstream | 144137 | 89807276 ~ 89813481 (+) |
| LOC118936687 | LOC106577393 | coding | downstream | 157236 | 89820375 ~ 89845196 (+) |
| LOC118966074 | NA | coding | downstream | 172140 | 89835279 ~ 89837227 (+) |
| LOC110531805 | LOC106597856 | coding | downstream | 184487 | 89847512 ~ 89873986 (+) |
| G99244 | NA | non-coding | upstream | 8761 | 89579400 ~ 89579604 (+) |
| G99243 | NA | non-coding | upstream | 11880 | 89576248 ~ 89576485 (+) |
| G99241 | NA | non-coding | upstream | 15331 | 89572254 ~ 89573034 (+) |
| G99238 | NA | non-coding | upstream | 24628 | 89563328 ~ 89563737 (+) |
| G99233 | NA | non-coding | upstream | 26885 | 89558256 ~ 89561480 (+) |
| G99322 | NA | non-coding | downstream | 5717 | 89668856 ~ 89669234 (+) |
| G99327 | NA | non-coding | downstream | 10911 | 89674050 ~ 89676679 (+) |
| G99414 | NA | non-coding | downstream | 114328 | 89777467 ~ 89779757 (+) |
| G99416 | NA | non-coding | downstream | 127706 | 89790845 ~ 89793063 (+) |
| G99436 | NA | non-coding | downstream | 164527 | 89827666 ~ 89828443 (+) |
| G99160 | NA | other | upstream | 129294 | 89458735 ~ 89459071 (+) |
| LOC118966060 | LOC106613898 | other | upstream | 843952 | 88608182 ~ 88744413 (+) |
| LOC118966062 | NA | other | upstream | 938571 | 88646294 ~ 88649794 (+) |
| LOC118966061 | NA | other | upstream | 944914 | 88551971 ~ 88647803 (+) |
| G99440 | NA | other | downstream | 176729 | 89839868 ~ 89841791 (+) |
| G99466 | NA | other | downstream | 244633 | 89907772 ~ 89908434 (+) |
| G99470 | NA | other | downstream | 251941 | 89915080 ~ 89918120 (+) |
| G99484 | NA | other | downstream | 286300 | 89949439 ~ 89950884 (+) |
| G99486 | NA | other | downstream | 291887 | 89955026 ~ 89955619 (+) |
