LOC118966075 (LOC106577395)


Basic Information

Item Value
gene id LOC118966075
gene name LOC106577395
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 89900338 ~ 89902518 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988407.1
AATATCTGCAGAGCTGAGTAGCTGTGCGACGGGAGAGTTACATGTAAAGTCGGCTTGACTGGGAAGCCTTTGTCCTCAATCGCagcaacaaaaataaataaactggaTTAGCAACAGAAAGAACATTTCCACGTTAGCAACATATCTTTGTAAGTATCATTACTGTCGCTGGCTATTGTTTCAACCTATTGTCTCGACCGTCAACTTTGAACAAGGGAATGAAaggactaacgttagctagcttagtCAACTGCCTTTCCTCCACTCGAACCTGATCTATGATCCCTGAGACTTGGAAAGTTACAAGAAGTTGAACACTTGACCAGTTGGAAATGATGCATGCACTTCCTACAACCATGATGGTCCATGATTTAGATAtcttcagctcatctccttctccAATGGACGCCACTGCCAAAAGGTCTTCATGGGGGAAACTGGTGCAGAAGTTAACGGACTTCAGTGGAGACGGCCAGAGCAGCCGTCACAGTTTAGACTCCGACTCAGACAATGGCAGCAGGACTGATCTCTCAGACTCCGGGTTTGACTTTCCCTCTATCTCCTCATCTGATGACTTCAGCAACGTGCTATATGAGGATCTCCTCTCAATGGAGGAGACCCTTCTGAAAGAACTTGTGCACCTAATTGCCAGTAGCTTAAGGGAAGCCAAAGACGGTGCCCTTAGATGTTCGAAACTACTCATCCCTGAGAAGCTTCTAGAACACATAGGCCAAGAGCTCCTTCACCTGGCGGCCAGCGAGCCCTGTGGCCTGAGGGGGGCTCTCATAGACCTCTGTGTGGAACAGGGGGAGGTGTGTCAGAGTATGGAACAGATCGCGGTGGATCCATATCTCGTCCCTACCTTCCAGCTCACACTGGTGCTGAGGCTCGATTCTGGAGGACTGTGGCCCAAAATCCAAGGGCTTTTCTCCACGAAGTCTCCATCCAGTCCCGTAAAGAGACAGGCGATTAGACTGAGCACGGGCTTCAGAGTGATCAAGAAGAAACTGTACAGCTCTGAAGAGTTGCTCATTGAAGAATGCTGAAAGAAACCAAAGAGACTTTCTTTAGATATTTTTCTAATAAACCTTGTACCAAGTGTCCTACCTACAACGCTCATCAGAGCCCTAGTGATCAACGTTTGGGATTCTAGTCAAATGTATGATTTTTCTAGGACATTTTCTTAACTGTTAAGATGAATCGCCGATTACTTTGCTATGTTCATTATTTGCCGATTGGCGTTCCTGTGTAGGGGAGCCACCGTAAATGGTACGTGGAAAGTTAATAAGAACAACTATTGTGCTTAAGAGAATGGAACAGGGAGCCACACAGTAAATGGTACGTGAGTAGTTTAGTGTGCTTAAGAGAATGGTGTTAACTCAAACACTGAAAAATGAAGTTTCTGGCACTTTTGCAAACCACTAATATCTATTTTTATACAAGATGGGTGGTTTGGTTTTCCATTTATTATTAAAAATGTTTACCTGTTTCTATTGAAACCAGACAATGGCAGCTAGCTGTGTGGTAATGTTTGTATGTAGCCATTTAGAAACTGTGGTAATATAATTTTTTTCTTCATGGCATTTCATTGTACACTATGGTGAGGGGACCAGATTGACATGTTTGGTTAGAGACCAACATTACTTAGCAGTACTGGCTTCTCCGTCCATTCTGTGAACCACAGGTCAGTTTACTTGATTCTTTATTTCCGGTTTCGACTGGATTGTCCTCCTGCATACTCATCTGTGCATCGTTTTATTTGATATTCAAATATCTGTACTGTCTTGATACTTTCCATTTTATGAACCTCGgacaataaaatattttttttttacaaaa
>XM_036988401.1
TTTCGTCGTTGCAGAATATCTGCAGAGCTGAGTAGCTGTGCGACGGGAGAGTTACATGTAAAGTCGGCTTGACTGGGAAGCCTTTGTCCTCAATCGCagcaacaaaaataaataaactggaTTAGCAACAGAAAGAACATTTCCACGTTAGCAACATATCTTTAACCTGATCTATGATCCCTGAGACTTGGAAAGTTACAAGAAGTTGAACACTTGACCAGTTGGAAATGATGCATGCACTTCCTACAACCATGATGGTCCATGATTTAGATAtcttcagctcatctccttctccAATGGACGCCACTGCCAAAAGGTCTTCATGGGGGAAACTGGTGCAGAAGTTAACGGACTTCAGTGGAGACGGCCAGAGCAGCCGTCACAGTTTAGACTCCGACTCAGACAATGGCAGCAGGACTGATCTCTCAGACTCCGGGTTTGACTTTCCCTCTATCTCCTCATCTGATGACTTCAGCAACGTGCTATATGAGGATCTCCTCTCAATGGAGGAGACCCTTCTGAAAGAACTTGTGCACCTAATTGCCAGTAGCTTAAGGGAAGCCAAAGACGGTGCCCTTAGATGTTCGAAACTACTCATCCCTGAGAAGCTTCTAGAACACATAGGCCAAGAGCTCCTTCACCTGGCGGCCAGCGAGCCCTGTGGCCTGAGGGGGGCTCTCATAGACCTCTGTGTGGAACAGGGGGAGGTGTGTCAGAGTATGGAACAGATCGCGGTGGATCCATATCTCGTCCCTACCTTCCAGCTCACACTGGTGCTGAGGCTCGATTCTGGAGGACTGTGGCCCAAAATCCAAGGGCTTTTCTCCACGAAGTCTCCATCCAGTCCCGTAAAGAGACAGGCGATTAGACTGAGCACGGGCTTCAGAGTGATCAAGAAGAAACTGTACAGCTCTGAAGAGTTGCTCATTGAAGAATGCTGAAAGAAACCAAAGAGACTTTCTTTAGATATTTTTCTAATAAACCTTGTACCAAGTGTCCTACCTACAACGCTCATCAGAGCCCTAGTGATCAACGTTTGGGATTCTAGTCAAATGTATGATTTTTCTAGGACATTTTCTTAACTGTTAAGATGAATCGCCGATTACTTTGCTATGTTCATTATTTGCCGATTGGCGTTCCTGTGTAGGGGAGCCACCGTAAATGGTACGTGGAAAGTTAATAAGAACAACTATTGTGCTTAAGAGAATGGAACAGGGAGCCACACAGTAAATGGTACGTGAGTAGTTTAGTGTGCTTAAGAGAATGGTGTTAACTCAAACACTGAAAAATGAAGTTTCTGGCACTTTTGCAAACCACTAATATCTATTTTTATACAAGATGGGTGGTTTGGTTTTCCATTTATTATTAAAAATGTTTACCTGTTTCTATTGAAACCAGACAATGGCAGCTAGCTGTGTGGTAATGTTTGTATGTAGCCATTTAGAAACTGTGGTAATATAATTTTTTTCTTCATGGCATTTCATTGTACACTATGGTGAGGGGACCAGATTGACATGTTTGGTTAGAGACCAACATTACTTAGCAGTACTGGCTTCTCCGTCCATTCTGTGAACCACAGGTCAGTTTACTTGATTCTTTATTTCCGGTTTCGACTGGATTGTCCTCCTGCATACTCATCTGTGCATCGTTTTATTTGATATTCAAATATCTGTACTGTCTTGATACTTTCCATTTTATGAACCTCGgacaataaaatattttttttttacaaaa

Function

NR:

description
DNA damage-inducible transcript 4 protein

GO: NA

KEGG:

id description
K08270 DDIT4, REDD1; DNA-damage-inducible transcript 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988407.1 False 1839 mRNA 0.43 3 89900338 89902504
XM_036988401.1 True 1734 mRNA 0.43 3 89900338 89902518

Neighbor

gene id symbol gene type direction distance location
fbxl15 fbx37 coding downstream 96545 89797912 ~ 89803793 (-)
ghitm LOC100136239 coding downstream 629967 89223150 ~ 89270371 (-)
LOC118966065 NA coding downstream 1118219 88757265 ~ 88782119 (-)
LOC118966064 NA coding downstream 1183261 88716318 ~ 88717077 (-)
LOC118966063 NA coding downstream 1184583 88714598 ~ 88715755 (-)
LOC110519290 cj104 coding upstream 9780 89912298 ~ 89920458 (-)
LOC118936688 LOC106577347 coding upstream 206778 90109296 ~ 90115842 (-)
LOC110515022 LOC106560865 coding upstream 213983 90116501 ~ 90141830 (-)
LOC110515023 LOC106594692 coding upstream 239926 90142444 ~ 90150699 (-)
LOC110515024 LOC106613759 coding upstream 248912 90151430 ~ 90156318 (-)
G99571 NA non-coding downstream 12414 89887429 ~ 89887924 (-)
G99570 LOC106583738 non-coding downstream 14295 89883846 ~ 89886043 (-)
G99521 NA non-coding downstream 20411 89796656 ~ 89879927 (-)
G99518 NA non-coding downstream 25434 89873759 ~ 89874904 (-)
G99565 LOC106597856 non-coding downstream 27501 89864618 ~ 89872837 (-)
G99579 NA non-coding upstream 1301 89903819 ~ 89904441 (-)
G99581 NA non-coding upstream 5320 89907838 ~ 89908447 (-)
G99583 NA non-coding upstream 6949 89909467 ~ 89909729 (-)
G99585 NA non-coding upstream 27654 89930172 ~ 89930476 (-)
G99035 NA other downstream 610282 89287214 ~ 89290056 (-)
G98878 NA other downstream 824100 89075847 ~ 89076238 (-)
G98616 NA other downstream 1256271 88551974 ~ 88644067 (-)
G99595 NA other upstream 54874 89957392 ~ 89957916 (-)
G99602 NA other upstream 61355 89963873 ~ 89964205 (-)
G100197 NA other upstream 725015 90625080 ~ 90858972 (-)
LOC110516041 jakmip3 other upstream 1080217 90982735 ~ 91072716 (-)
G100582 NA other upstream 1330222 91232740 ~ 91233788 (-)

Expression


Co-expression Network