LOC110519290 (cj104)


Basic Information

Item Value
gene id LOC110519290
gene name cj104
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 89912298 ~ 89920458 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988448.1
AAATGAATGATGCGCCGATATCAACATTTGATTTATATATCGCCCAAGCCGTAAAGCGGGGGTTATTGTTGGGGTAGCTAACCAGAAACATAAACAAAAGCAGAAGTTAGCCTGCCGCTTTCTCCATCACCAGTGTTCCTCTTCCTCAGTTGGAATGGcagcctcctcctcatcctcctctgccGGAGGGGTTAGTGGGAGTTCCGTGACTGGCTCTGGATTCAGCGCGTCTGAGCTCATCCCCCCGCGTAAGGTCCTCTACACTTATCCCAAAGGAGCCGGGGAGATGATGGAAGACGGCTCAGACAGAtttctgtgtgagtctgtgttcAGCTACCAGGTGGCGTCAACACTGAAACAAGTGAAGCACGatcaaCAGGTATCTAGAATGGAGAAACTGGCCAGTTTGGTTGAAGAGCTGGAAGCAGATGAGTGGCGTTACAAACCAATCGAACAGCTTTTGGGATTTACTCCGTCTTAGAGGTCCACTGGAGGAACACGTTGACCACAGAACACGACTTTATTTCCAACACGTTTGCTTTATTGTCATTTGTTGTGTCATTCCCACAGGGAAGGATGTTCCTGCCTGTTATTGGCCAATGATTAGCTGTGGTCACTAACTGGAGGAAGGAACACCCTGATACGAGAGAGCTATTGttgtgacctaaaaaaaaaaaaaaactttatcacTGCAATGAATTATGAATTGAGTAATTAATCATGTTATAGTGGGGAAATTGATGCATTCGTGTTTtactagtgttttttttttaaataaactaaATTATATTAAGGAATAAGGAATCCTCTTCCTATGTATTAAAATGAAAACATGACGTACTTGGATTATCATTTATTAAATAttgaaataaaaatatacagAATCAA
>XM_036988442.1
GTTTGACGTAAAGTAACCAGCTGATTACGTCGTCGCTGATCTCTAAACCGCATGGATAGACATTCCGCGCTCGCAACAAATGAATGATGCGCCGATATCAACATTTGATTTATATATCGCCCAAGCCGTAAAGCGGGGGTTATTGTTGGGGTAGCTAACCAGAAACATAAACAAAAGCAGAAGTTAGCCTGCCGCTTTCTCCATCACCAGTGTTGGAATGGcagcctcctcctcatcctcctctgccGGAGGGGTTAGTGGGAGTTCCGTGACTGGCTCTGGATTCAGCGCGTCTGAGCTCATCCCCCCGCGTAAGGTCCTCTACACTTATCCCAAAGGAGCCGGGGAGATGATGGAAGACGGCTCAGACAGAtttctgtgtgagtctgtgttcAGCTACCAGGTGGCGTCAACACTGAAACAAGTGAAGCACGatcaaCAGGTATCTAGAATGGAGAAACTGGCCAGTTTGGTTGAAGAGCTGGAAGCAGATGAGTGGCGTTACAAACCAATCGAACAGCTTTTGGGATTTACTCCGTCTTAGAGGTCCACTGGAGGAACACGTTGACCACAGAACACGACTTTATTTCCAACACGTTTGCTTTATTGTCATTTGTTGTGTCATTCCCACAGGGAAGGATGTTCCTGCCTGTTATTGGCCAATGATTAGCTGTGGTCACTAACTGGAGGAAGGAACACCCTGATACGAGAGAGCTATTGttgtgacctaaaaaaaaaaaaaaactttatcacTGCAATGAATTATGAATTGAGTAATTAATCATGTTATAGTGGGGAAATTGATGCATTCGTGTTTtactagtgttttttttttaaataaactaaATTATATTAAGGAATAAGGAATCCTCTTCCTATGTATTAAAATGAAAACATGACGTACTTGGATTATCATTTATTAAATAttgaaataaaaatatacagAATCAA
>XM_036988457.1
ATACGGCAGTTTGACGTAAAGTAACCAGCTGATTACGTCGTCGCTGATCTCTAAACCGCATGGATAGACATTCCGCGCTCGCAACAAATGAATGATGCGCCGATATCAACATTTGATTTATATATCGCCCAAGCCGTAAAGCGGGGGTTATTGTTGGGGTAGCTAACCAGAAACATAAACAAAAGCAGAAGTTAGCCTGCCGCTTTCTCCATCACCAGTGTTGGAATGGcagcctcctcctcatcctcctctgccGGAGGGGTTAGTGGGAGTTCCGTGACTGGCTCTGGATTCAGCGCGTCTGAGCTCATCCCCCCGCGTAAGGTCCTCTACACTTATCCCAAAGGAGCCGGGGAGATGATGGAAGACGGCTCAGACAGAtttctgtgtgagtctgtgttcAGCTACCAGGTGGCGTCAACACTGAAACAAGTGAAGCACGGTATCTAGAATGGAGAAACTGGCCAGTTTGGTTGAAGAGCTGGAAGCAGATGAGTGGCGTTACAAACCAATCGAACAGCTTTTGGGATTTACTCCGTCTTAGAGGTTCAAATAAAGACCTGCCCAGTAGCCCGCTAGCTGGTCACCACTGGAGGAACACGTTGACCACAGAACACGACTTTATTTCCAACACGTTTGCTTTATTGTCATTTGTTGTGTCATTCCCACAGGGAAGGATGTTCCTGCCTGTTATTGGCCAATGATTAGCTGTGGTCACTAACTGGAGGAAGGAACACCCTGATACGAGAGAGCTATTGttgtgacctaaaaaaaaaaaaaaactttatcacTGCAATGAATTATGAATTGAGTAATTAATCATGTTATAGTGGGGAAATTGATGCATTCGTGTTTtactagtgttttttttttaaataaactaaATTATATTAAGGAATAAGGAATCCTCTTCCTATGTATTAAAATGAAAACATGACGTACTTGGATTATCATTTATTAAATAttgaaataaaaatatacagAATCAA
>TU110314
GCGGGGGTTATTGTTGGGGTAGCTAACCAGAAACATAAACAAAAGCAGAAGTTAGCCTGCCGCTTTCTCCATCACCAGTGTTGGAATGGcagcctcctcctcatcctcctctgccGGAGGGGTTAGTGGGAGTTCCGTGACTGGCTCTGGATTCAGCGCGTCTGAGCTCATCCCCCCGCGTAAGGTCCTCTACACTTATCCCAAAGGAGCCGGGGAGATGATGGAAGACGGCTCAGACAGAtttctgtgtgagtctgtgttcAGCTACCAGGTGGCGTCAACACTGAAACAAGTGAAGCACGGTATCTAGAATGGAGAAACTGGCCAGTTTGGTTGAAGAGCTGGAAGCAGATGAGTGGCGTTACAAACCAATCGAACAGCTTTTGGGATTTACTCCGTCTTAGAGGTCCACTGGAGGAACACGTTGACCACAGAACACGACTTTATTTCCAACACGTTTGCTTTATTGTCATTTGTTGTGTCATTCCCACAGGGAAGGATGTTCCTGCCTGTTATTGGCCAATGATTAGCTGTGGTCACTAACTGGAGGAAGGAACACCCTGATACGAGAGAGCTATTGttgtgacctaaaaaaaaaaaaaaactttatcacTGCAATGAATTATGAATTGAGTAATTAATCATGTTATAGTGGGGAAATTGATGCATTCGTGTTTtactagtgttttttttttaaataaactaaATTATATTAAGGAATAAGGAATCCTCTTCCTATGTATTAAAATGAAAACATGACGTACTTGGATTATCATTTATTAAATAttgaaataaaaatatacagAATCAA

Function

NR:

description
CJ104 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988448.1 False 888 mRNA 0.42 5 89912298 89920373
XM_036988442.1 False 951 mRNA 0.43 5 89912298 89920450
XM_036988457.1 False 989 mRNA 0.43 4 89912298 89920458
TU110314 True 811 lncRNA 0.32 5 89912298 89920318

Neighbor

gene id symbol gene type direction distance location
LOC118966075 LOC106577395 coding downstream 9780 89900338 ~ 89902518 (-)
fbxl15 fbx37 coding downstream 108505 89797912 ~ 89803793 (-)
ghitm LOC100136239 coding downstream 641927 89223150 ~ 89270371 (-)
LOC118966065 NA coding downstream 1130179 88757265 ~ 88782119 (-)
LOC118966064 NA coding downstream 1195221 88716318 ~ 88717077 (-)
LOC118936688 LOC106577347 coding upstream 188838 90109296 ~ 90115842 (-)
LOC110515022 LOC106560865 coding upstream 196043 90116501 ~ 90141830 (-)
LOC110515023 LOC106594692 coding upstream 221986 90142444 ~ 90150699 (-)
LOC110515024 LOC106613759 coding upstream 230972 90151430 ~ 90156318 (-)
LOC110532927 LOC106577426 coding upstream 562263 90482721 ~ 90498148 (-)
G99583 NA non-coding downstream 2569 89909467 ~ 89909729 (-)
G99581 NA non-coding downstream 3851 89907838 ~ 89908447 (-)
G99579 NA non-coding downstream 7857 89903819 ~ 89904441 (-)
G99571 NA non-coding downstream 24374 89887429 ~ 89887924 (-)
G99570 LOC106583738 non-coding downstream 26255 89883846 ~ 89886043 (-)
G99585 NA non-coding upstream 9714 89930172 ~ 89930476 (-)
G99586 NA non-coding upstream 10191 89930649 ~ 89931012 (-)
G99587 NA non-coding upstream 11606 89932064 ~ 89932399 (-)
G99593 NA non-coding upstream 35974 89956432 ~ 89956643 (-)
G99594 NA non-coding upstream 36333 89956791 ~ 89957140 (-)
G99035 NA other downstream 622242 89287214 ~ 89290056 (-)
G98878 NA other downstream 836060 89075847 ~ 89076238 (-)
G98616 NA other downstream 1268231 88551974 ~ 88644067 (-)
G99595 NA other upstream 36934 89957392 ~ 89957916 (-)
G99602 NA other upstream 43415 89963873 ~ 89964205 (-)
G100197 NA other upstream 707075 90625080 ~ 90858972 (-)
LOC110516041 jakmip3 other upstream 1062277 90982735 ~ 91072716 (-)
G100582 NA other upstream 1312282 91232740 ~ 91233788 (-)

Expression


Co-expression Network