LOC118936688 (LOC106577347)


Basic Information

Item Value
gene id LOC118936688
gene name LOC106577347
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 90109296 ~ 90115842 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988479.1
GTAGGCGGCGCTAGTGCGCCACCGGGGTGGTTAGGAAGTTCCCGAAGTCACGTCGAAGAACAATACAATCAGCTGTTCGTTGATCGAAGCCGCAAAAACAATCTAACCAAAGCTGTCATTGTCGACAGGGACAGGCAAAGACCAGTGAAATGTCATTCCTCTTTGATTGGCTCTACAGAGGCTTTAGTGGTGTGCTACAGTTTTTAGGGTTGTACAAAAAATCTGGAAAGTTGGTTTTCCTGGGGTTGGATAATGCTGGTAAAACAACCCTGTTGCATATGCTGAAAGATGACCGACTTGGACAGCATGTGCCCACGTTGCATCCAACATCGGAAGAGTTGACGATAGCTGGAATGACATTCACCACGTTTGATCTGGGCGGCCACGTACAAGCTAGAAGAGTTTGGAAGAACTACCTGCCGGCTATCAATGGAGTTGTCTTTCTGGTTGACTGTGCCGACCACGAACGCCTTACAGAATCCAAGATCGAACTTGATgctcTGTTAGCAGATGAGACCATCCTCTCTGTGCCTGTGCTGGTCCTGGGTAACAAGATAGACCGTCCTGAAGCCATCAGTGAAGGGGGACTGAGAGAGGCGTTCGTTCTCGATGGACAATGCACTGGAAAAGGTAACGTGTCGTTGAAGGATCTGCAGGCACGACCTCTGGAGATTTTCATGTGCAGTGTCCTGAAGAAGCAGGGCTATGGAGATGGCTTCAGGTGGCTGGCACAATACATCGACTGACATCTAGGCAGCGGTTCTTTTACTAAACAGACTCCCATCTTTCTGGGGGGAATGAAGAGGATAAGCTATCAAATGAAATGGCCCatatcgtccccccccccccccccaaccccatgTGGAAAGATGTGAAGCTCCCAATAATCAGCTTTCTGATTGAGTACATCTGTCAATTTCAGCATTAATTGGTCAGTTTTAAAGGTTTCTATCTATGCAAACTTTTAAAAGTGGTTCATGGTCACAAGATTCAAGATGGGTTTGCGTGTAAGTCCATTAGTTAAGTATAACGTCGACCCGTTCTCTGGCATGTAAAATTAGAGTATCCGATTCTACCCCAACAGATTTGATCATAGCTGCAATTCAAGCTACAGTATACGGCAGATGTACCAATGTAGAACCTTTATAAGGTATACTGTGAACTTTTTAAAttatttctgaaaaatgaaggacCAAGCGATTTTTAAATGAAATAGATTATAAATGATAAGGATATTTATGTGAATGGTGGCGGTACAAATGCTTGTACATAGCAGTCCTACCTAGAATAAGATGTTCTTATCACTAAGAGGACATGAAAGAGGATAGATAGACTGAGCAGGATTATTCCAACAGACCCAAGTTCCAATCGCATCGAATAGAACGTCATCTAAAGTTTAGGGGCGGAGTCCATTTGACCTGATTCTGTTTCTATACATGGCGTGTATATCCCAAATGGCAGCATATtgactatatagtgcactacttcagagaACCCATACTTTCTATGCCCCCCCTAccccccggtcaaaagtagtgcactaaatagggaatagggtgccaaccctgatcaaaagtagggcactaaataggaaatagggtgccaaccctgatcaaaagtagtgcactaaataggaaatatgg

Function

NR:

description
GTP-binding protein SAR1b-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07953 SAR1; GTP-binding protein SAR1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988479.1 True 1643 mRNA 0.45 7 90109296 90115842

Neighbor

gene id symbol gene type direction distance location
LOC110519290 cj104 coding downstream 188838 89912298 ~ 89920458 (-)
LOC118966075 LOC106577395 coding downstream 206778 89900338 ~ 89902518 (-)
fbxl15 fbx37 coding downstream 305503 89797912 ~ 89803793 (-)
ghitm LOC100136239 coding downstream 838925 89223150 ~ 89270371 (-)
LOC118966065 NA coding downstream 1327177 88757265 ~ 88782119 (-)
LOC110515022 LOC106560865 coding upstream 659 90116501 ~ 90141830 (-)
LOC110515023 LOC106594692 coding upstream 26602 90142444 ~ 90150699 (-)
LOC110515024 LOC106613759 coding upstream 35588 90151430 ~ 90156318 (-)
LOC110532927 LOC106577426 coding upstream 366879 90482721 ~ 90498148 (-)
LOC110531748 polr3a coding upstream 432398 90548240 ~ 90602774 (-)
G99951 NA non-coding downstream 94 90106061 ~ 90109202 (-)
G99991 NA non-coding downstream 3671 90104240 ~ 90105625 (-)
G99987 NA non-coding downstream 13394 90095201 ~ 90095902 (-)
G99978 NA non-coding downstream 26505 90082488 ~ 90082791 (-)
G99960 NA non-coding downstream 67500 90040851 ~ 90041796 (-)
G99995 NA non-coding upstream 8753 90124595 ~ 90137490 (-)
G99957 NA non-coding upstream 60942 90176784 ~ 90177309 (-)
G100023 NA non-coding upstream 81761 90197603 ~ 90199466 (-)
G100024 NA non-coding upstream 82183 90198025 ~ 90199853 (-)
G100051 NA non-coding upstream 139973 90255815 ~ 90256156 (-)
G99602 NA other downstream 145091 89963873 ~ 89964205 (-)
G99595 NA other downstream 151380 89957392 ~ 89957916 (-)
G99035 NA other downstream 819240 89287214 ~ 89290056 (-)
G98878 NA other downstream 1033058 89075847 ~ 89076238 (-)
G100197 NA other upstream 511691 90625080 ~ 90858972 (-)
LOC110516041 jakmip3 other upstream 866893 90982735 ~ 91072716 (-)
G100582 NA other upstream 1116898 91232740 ~ 91233788 (-)
LOC110531398 glrx3 other upstream 1676737 91791792 ~ 91832379 (-)
G102060 NA other upstream 2475739 92591581 ~ 92595514 (-)

Expression


Co-expression Network