LOC110515022 (LOC106560865)


Basic Information

Item Value
gene id LOC110515022
gene name LOC106560865
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 90116501 ~ 90141830 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988484.1
cagatacacagatcaAGCCTGACGTCACCAACCCCTGCGTTGCCATGGCCTTAAGAGGAGCACATGCCTCCTGCTCACACTCTCCTTCACACTCCAACCTACGGTCTTAACCTACTAGTTAACCTGCATGACGAGGAGATGGGCTTCCCATTGTCTACTCCTACAGGCAGTACAGGAAGTACGCCCACTAGCAGCAGTACCAAGAAGCAGACTGAACAAAATAAGGCAGTAGACATGAGCTTCACCATCGAGGAGAGGGGCAAGCCCAACACACTGGATTACAGGGTGTTCTTCAGAAATACTGAGGGAAAACACGTCTCTCCATTCCATGACATACCAATTTATGCAGATGaagctcagAACATCTTCCATGCTGTTGTTGAGGTACCCAGATGGACCAACGCaaagatggagATTGCCACCAAAGACCCTCTAAATCCATTGAAGCAAGACATCAAGAAGGGGACCCTTCGTTATGTGGCCAACGTGTTTCCACACAAAGGATACATCTGGAACTATGGAGCCATCCCTCAGACATGGGAGGACCCGGGCCATAAAGACGCAGATACAGGATGCTGTGGTGACAATGACCCTATTGACATCTGTGACATAGGATACAAGGTGTGCTCTCGTGGAGAGGTGATTAAAGTCAAGGTGTTGGGCACTCTGGCTCTGATCGACGAAGGAGAAACAGACTGGAAAGTCATTGTCATCAACATGGAGGATCCAGAGGCCAACAACTTTAACAATATTGATGACGTAAGAAGACTCAAGCCTGGGTATCTGGAAGCTACATTTGAGTGGTTCAAAAAATATAAAGTTCCCGATGGAAAACCTGAGAACCAGTTTGCATTTAACGGAGAGTTCAAGGACAGGGACTTTGCTCTTAAGACAGTCAAGGAAACTCACGAGTTTTGGAAGTCGCTGATCTCCAAAAAGACCAACGCTGGAGAACTGAACTGTACCAACACCTGTGTCACAGACAGTCCATTCTGCTGTTCCACTACTGATGCTAAGGCTGTTGTTGATGCCGCATGTGTTTTTGGCCCTGAAGACCCTATTCCAAGTGCAGTTGACAAATGGTTCTATGTCTAAGTGAACTGACCCAGAAAGAAGAGCCTTCAGATTGGACCAAAATGTTTTCTCACCTGAACGGAAGACTATACTTGAAAATGACAGAAAACACGTGTAGTATAATTACAGTTTCCCATTTTTAGTATGAATTGTGATTGATGCTTGTCCTCTTAGCATGACAAGTACTCAACCAAGTAAGCCAGTTCTTTATGTTTATTATATTTCTCAAATGTGTAACAATATGACCTTTATAGTCCTTTATAAACCTCTGCAGTTTGCCGTGTCTTGCATCATGTTGTTTGATACTGAAATCGGAAAATTGTCATAAATCTTCAAATAAATACCATCAGCACATCCCCCTCCTC
>XM_036988490.1
TAATTTGCTTGCTAAATGTAGTCTATATAGTTTGGTTGATTGTTACACGACCCGTTGTGTGGAAATGTAGATTGATTTATTTTTAAGTTGGAGACATTCATAAGAGGGATGATGAACCAAGGCCAAATTCAAGGAAATACTGAGGGAAAACACGTCTCTCCATTCCATGACATACCAATTTATGCAGATGaagctcagAACATCTTCCATGCTGTTGTTGAGGTACCCAGATGGACCAACGCaaagatggagATTGCCACCAAAGACCCTCTAAATCCATTGAAGCAAGACATCAAGAAGGGGACCCTTCGTTATGTGGCCAACGTGTTTCCACACAAAGGATACATCTGGAACTATGGAGCCATCCCTCAGACATGGGAGGACCCGGGCCATAAAGACGCAGATACAGGATGCTGTGGTGACAATGACCCTATTGACATCTGTGACATAGGATACAAGGTGTGCTCTCGTGGAGAGGTGATTAAAGTCAAGGTGTTGGGCACTCTGGCTCTGATCGACGAAGGAGAAACAGACTGGAAAGTCATTGTCATCAACATGGAGGATCCAGAGGCCAACAACTTTAACAATATTGATGACGTAAGAAGACTCAAGCCTGGGTATCTGGAAGCTACATTTGAGTGGTTCAAAAAATATAAAGTTCCCGATGGAAAACCTGAGAACCAGTTTGCATTTAACGGAGAGTTCAAGGACAGGGACTTTGCTCTTAAGACAGTCAAGGAAACTCACGAGTTTTGGAAGTCGCTGATCTCCAAAAAGACCAACGCTGGAGAACTGAACTGTACCAACACCTGTGTCACAGACAGTCCATTCTGCTGTTCCACTACTGATGCTAAGGCTGTTGTTGATGCCGCATGTGTTTTTGGCCCTGAAGACCCTATTCCAAGTGCAGTTGACAAATGGTTCTATGTCTAAGTGAACTGACCCAGAAAGAAGAGCCTTCAGATTGGACCAAAATGTTTTCTCACCTGAACGGAAGACTATACTTGAAAATGACAGAAAACACGTGTAGTATAATTACAGTTTCCCATTTTTAGTATGAATTGTGATTGATGCTTGTCCTCTTAGCATGACAAGTACTCAACCAAGTAAGCCAGTTCTTTATGTTTATTATATTTCTCAAATGTGTAACAATATGACCTTTATAGTCCTTTATAAACCTCTGCAGTTTGCCGTGTCTTGCATCATGTTGTTTGATACTGAAATCGGAAAATTGTCATAAATCTTCAAATAAATACCATCAGCACATCCCCCTCCTC
>XM_036988488.1
TCCTTGGATTAATTTGCTTGCTAAATGTAGTCTATATAGTTTGGTTGATTGTTACACGACCCGTTGTGTGGAAATGTAGATTGATTTATTTTTAAGTTGGAGACATTCATAAGAGGGATGATGAACCAAGGCCAAATTCAAGGCAGTACAGGAAGTACGCCCACTAGCAGCAGTACCAAGAAGCAGACTGAACAAAATAAGGCAGTAGACATGAGCTTCACCATCGAGGAGAGGGGCAAGCCCAACACACTGGATTACAGGGTGTTCTTCAGAAATACTGAGGGAAAACACGTCTCTCCATTCCATGACATACCAATTTATGCAGATGaagctcagAACATCTTCCATGCTGTTGTTGAGGTACCCAGATGGACCAACGCaaagatggagATTGCCACCAAAGACCCTCTAAATCCATTGAAGCAAGACATCAAGAAGGGGACCCTTCGTTATGTGGCCAACGTGTTTCCACACAAAGGATACATCTGGAACTATGGAGCCATCCCTCAGACATGGGAGGACCCGGGCCATAAAGACGCAGATACAGGATGCTGTGGTGACAATGACCCTATTGACATCTGTGACATAGGATACAAGGTGTGCTCTCGTGGAGAGGTGATTAAAGTCAAGGTGTTGGGCACTCTGGCTCTGATCGACGAAGGAGAAACAGACTGGAAAGTCATTGTCATCAACATGGAGGATCCAGAGGCCAACAACTTTAACAATATTGATGACGTAAGAAGACTCAAGCCTGGGTATCTGGAAGCTACATTTGAGTGGTTCAAAAAATATAAAGTTCCCGATGGAAAACCTGAGAACCAGTTTGCATTTAACGGAGAGTTCAAGGACAGGGACTTTGCTCTTAAGACAGTCAAGGAAACTCACGAGTTTTGGAAGTCGCTGATCTCCAAAAAGACCAACGCTGGAGAACTGAACTGTACCAACACCTGTGTCACAGACAGTCCATTCTGCTGTTCCACTACTGATGCTAAGGCTGTTGTTGATGCCGCATGTGTTTTTGGCCCTGAAGACCCTATTCCAAGTGCAGTTGACAAATGGTTCTATGTCTAAGTGAACTGACCCAGAAAGAAGAGCCTTCAGATTGGACCAAAATGTTTTCTCACCTGAACGGAAGACTATACTTGAAAATGACAGAAAACACGTGTAGTATAATTACAGTTTCCCATTTTTAGTATGAATTGTGATTGATGCTTGTCCTCTTAGCATGACAAGTACTCAACCAAGTAAGCCAGTTCTTTATGTTTATTATATTTCTCAAATGTGTAACAATATGACCTTTATAGTCCTTTATAAACCTCTGCAGTTTGCCGTGTCTTGCATCATGTTGTTTGATACTGAAATCGGAAAATTGTCATAAATCTTCAAATAAATACCATCAGCACATCCCCCTCCTC

Function

NR:

description
inorganic pyrophosphatase-like isoform X1

GO: NA

KEGG:

id description
K01507 ppa; inorganic pyrophosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988484.1 False 1439 mRNA 0.45 11 90116501 90140061
XM_036988490.1 False 1277 mRNA 0.42 11 90116501 90141821
XM_036988488.1 True 1415 mRNA 0.43 12 90116501 90141830

Neighbor

gene id symbol gene type direction distance location
LOC118936688 LOC106577347 coding downstream 659 90109296 ~ 90115842 (-)
LOC110519290 cj104 coding downstream 196043 89912298 ~ 89920458 (-)
LOC118966075 LOC106577395 coding downstream 213983 89900338 ~ 89902518 (-)
fbxl15 fbx37 coding downstream 312708 89797912 ~ 89803793 (-)
ghitm LOC100136239 coding downstream 846130 89223150 ~ 89270371 (-)
LOC110515023 LOC106594692 coding upstream 614 90142444 ~ 90150699 (-)
LOC110515024 LOC106613759 coding upstream 9600 90151430 ~ 90156318 (-)
LOC110532927 LOC106577426 coding upstream 340891 90482721 ~ 90498148 (-)
LOC110531748 polr3a coding upstream 406410 90548240 ~ 90602774 (-)
LOC118966735 LOC106564289 coding upstream 504148 90645978 ~ 90657019 (-)
G99951 NA non-coding downstream 7299 90106061 ~ 90109202 (-)
G99991 NA non-coding downstream 10876 90104240 ~ 90105625 (-)
G99987 NA non-coding downstream 20599 90095201 ~ 90095902 (-)
G99978 NA non-coding downstream 33710 90082488 ~ 90082791 (-)
G99960 NA non-coding downstream 74705 90040851 ~ 90041796 (-)
G99957 NA non-coding upstream 34954 90176784 ~ 90177309 (-)
G100023 NA non-coding upstream 55773 90197603 ~ 90199466 (-)
G100024 NA non-coding upstream 56195 90198025 ~ 90199853 (-)
G100051 NA non-coding upstream 113985 90255815 ~ 90256156 (-)
G100076 NA non-coding upstream 167083 90308913 ~ 90310511 (-)
G99602 NA other downstream 152296 89963873 ~ 89964205 (-)
G99595 NA other downstream 158585 89957392 ~ 89957916 (-)
G99035 NA other downstream 826445 89287214 ~ 89290056 (-)
G98878 NA other downstream 1040263 89075847 ~ 89076238 (-)
G100197 NA other upstream 485703 90625080 ~ 90858972 (-)
LOC110516041 jakmip3 other upstream 840905 90982735 ~ 91072716 (-)
G100582 NA other upstream 1090910 91232740 ~ 91233788 (-)
LOC110531398 glrx3 other upstream 1650749 91791792 ~ 91832379 (-)
G102060 NA other upstream 2449751 92591581 ~ 92595514 (-)

Expression


Co-expression Network