LOC110515023 (LOC106594692)


Basic Information

Item Value
gene id LOC110515023
gene name LOC106594692
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 90142444 ~ 90150699 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988497.1
TGCTGATTCTATTGTACAATCTATTACACAGATCTCCACTCGGACGTCGTTTGTGGAATTATGAGTGAGATTCGTAGACCTAGTATAATGGCAGAGGCTGTGGCCAATGTTGCCCGGAGGGTCAATGCAACCGTGGAGGAAGAGAAAGATACTCTGGATCTGTCAAACTGCAAACTGATCAGTTTCCCAGATGGGGTATTCAGGGTCCTCAACAGCGTTGCAGAGAAGATACACATCGTCACGTTGGCTGACAATGAGATGAAGGGAGTTACAAGCAAATTTTTCAAAACCTTCACTCAATTGAGAGAACTGGACTTGCACGGCAATGTCATCACTAAACTGCCAGATGTAGTTGGCGAGCTGGAACATCTGACCAGCATCAACTTGGCCAACAACAAGTTGTCTGTCTTCCCCGAGAGACTGACGGAGATCCAGTCTCTGGAAAGAATCAACCTGGAAGGGAATGACATCACTGACGTCCCCATGGAAAAGTTGCAGGCCATGCCAGCTCTGAAGTGTCTCAACCTGAAGTCAAATCCTTTGGACAACAACTTGTTAACTGCCATTCAACAATTTCCTCAAACATTTGAAATTCAAACTACAACAGACAACTAAGAGCTTGTCTTCTTCTAAGATGGACAGTTTATCCACACCTAGAGACAATGAGGATTGCATGCTGTGCCTTCAGACTTTTTCAATAGTACAATTAGAGATTCAGAGATTCAATTGTTTGGCCTCTATTTCATTA
>XM_036988498.1
GTCATACAGTATATGCTGATTCTATTGTACAATCTATTACACAGATCTCCACTCGGACGTCGTTTGTGGAATTATGAGTAGGCTACATTAGAAAGCTAGCAATTTAGCTATTACTACGAATTAAGCTCGCTTTAATAGCTAACTAACTGTTGTAGCTCGCCTATAACTTGACGTGGGACAGGTGAGATTCGTAGACCTAGTATAATGGCAGAGGCTGTGGCCAATGTTGCCCGGAGGGTCAATGCAACCGTGGAGGAAGAGAAAGATACTCTGGATCTGTCAAACTGCAAACTGATCAGTTTCCCAGATGGGGTATTCAGGGTCCTCAACAGCGTTGCAGAGAAGATACACATCGTCACGTTGGCTGACAATGAGATGAAGGGAGTTACAAGCAAATTTTTCAAAACCTTCACTCAATTGAGAGAACTGGACTTGCACGGCAATGTCATCACTAAACTGCCAGATGTAGTTGGCGAGCTGGAACATCTGACCAGCATCAACTTGGCCAACAACAAGTTGTCTGTCTTCCCCGAGAGACTGACGGAGATCCAGTCTCTGGAAAGAATCAACCTGGAAGGGAATGACATCACTGACGTCCCCATGGAAAAGTTGCAGGCCATGCCAGCTCTGAAGTGTCTCAACCTGAAGTCAAATCCTTTGGACAACAACTTGTTAACTGCCATTCAACAATTTCCTCAAACATTTGAAATTCAAACTACAACAGACAACTAAGAGCTTGTCTTCTTCTAAGATGGACAGTTTATCCACACCTAGAGACAATGAGGATTGCATGCTGTGCCTTCAGACTTTTTCAATAGTACAATTAGAGATTCAGAGATTCAATTGTTTGGCCTCTATTTCATTA
>XM_036988505.1
TCTCGTCAATACGGTAGCGTGTACTGTAGAAGCAATATAACTATTGATGGCAACAAGAGGCTAAAATAGTGTCTTTAAACTCAAATTGcgcacaaaaacaaacattttggaAGTATTGGACAGATTTTAACAATAACGACAGAACAGGTCATCTGAAAAGTGCATCGATCGACTTTAGCCCAGTGTATCCTCTTTGGTTAAAAATAGTCTCTCGCCAAATTTGACGGTGGTTGTTTGAAAATGAATGGATTTGATTGGACGGAGCCTTGAACCGACTTGCTAACATTTTCAGCTGTCAACCACAGTTAAAGTTTAAGGGTGAGATTCGTAGACCTAGTATAATGGCAGAGGCTGTGGCCAATGTTGCCCGGAGGGTCAATGCAACCGTGGAGGAAGAGAAAGATACTCTGGATCTGTCAAACTGCAAACTGATCAGTTTCCCAGATGGGGTATTCAGGGTCCTCAACAGCGTTGCAGAGAAGATACACATCGTCACGTTGGCTGACAATGAGATGAAGGGAGTTACAAGCAAATTTTTCAAAACCTTCACTCAATTGAGAGAACTGGACTTGCACGGCAATGTCATCACTAAACTGCCAGATGTAGTTGGCGAGCTGGAACATCTGACCAGCATCAACTTGGCCAACAACAAGTTGTCTGTCTTCCCCGAGAGACTGACGGAGATCCAGTCTCTGGAAAGAATCAACCTGGAAGGGAATGACATCACTGACGTCCCCATGGAAAAGTTGCAGGCCATGCCAGCTCTGAAGTGTCTCAACCTGAAGTCAAATCCTTTGGACAACAACTTGTTAACTGCCATTCAACAATTTCCTCAAACATTTGAAATTCAAACTACAACAGACAACTAAGAGCTTGTCTTCTTCTAAGATGGACAGTTTATCCACACCTAGAGACAATGAGGATTGCATGCTGTGCCTTCAGACTTTTTCAATAGTACAATTAGAGATTCAGAGATTCAATTGTTTGGCCTCTATTTCATTA
>XM_036988510.1
AGCGGGCTAAATCCTAACCAGGATCCTAAGGTGAGATTCGTAGACCTAGTATAATGGCAGAGGCTGTGGCCAATGTTGCCCGGAGGGTCAATGCAACCGTGGAGGAAGAGAAAGATACTCTGGATCTGTCAAACTGCAAACTGATCAGTTTCCCAGATGGGGTATTCAGGGTCCTCAACAGCGTTGCAGAGAAGATACACATCGTCACGTTGGCTGACAATGAGATGAAGGGAGTTACAAGCAAATTTTTCAAAACCTTCACTCAATTGAGAGAACTGGACTTGCACGGCAATGTCATCACTAAACTGCCAGATGTAGTTGGCGAGCTGGAACATCTGACCAGCATCAACTTGGCCAACAACAAGTTGTCTGTCTTCCCCGAGAGACTGACGGAGATCCAGTCTCTGGAAAGAATCAACCTGGAAGGGAATGACATCACTGACGTCCCCATGGAAAAGTTGCAGGCCATGCCAGCTCTGAAGTGTCTCAACCTGAAGTCAAATCCTTTGGACAACAACTTGTTAACTGCCATTCAACAATTTCCTCAAACATTTGAAATTCAAACTACAACAGACAACTAAGAGCTTGTCTTCTTCTAAGATGGACAGTTTATCCACACCTAGAGACAATGAGGATTGCATGCTGTGCCTTCAGACTTTTTCAATAGTACAATTAGAGATTCAGAGATTCAATTGTTTGGCCTCTATTTCATTA

Function

NR:

description
leucine-rich repeat-containing protein 20 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988497.1 False 748 mRNA 0.44 5 90142444 90150083
XM_036988498.1 False 865 mRNA 0.43 5 90142444 90150096
XM_036988505.1 False 1002 mRNA 0.42 5 90142444 90150433
XM_036988510.1 True 714 mRNA 0.45 5 90142444 90150699
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Neighbor

gene id symbol gene type direction distance location
LOC110515022 LOC106560865 coding downstream 614 90116501 ~ 90141830 (-)
LOC118936688 LOC106577347 coding downstream 26602 90109296 ~ 90115842 (-)
LOC110519290 cj104 coding downstream 221986 89912298 ~ 89920458 (-)
LOC118966075 LOC106577395 coding downstream 239926 89900338 ~ 89902518 (-)
fbxl15 fbx37 coding downstream 338651 89797912 ~ 89803793 (-)
LOC110515024 LOC106613759 coding upstream 731 90151430 ~ 90156318 (-)
LOC110532927 LOC106577426 coding upstream 332022 90482721 ~ 90498148 (-)
LOC110531748 polr3a coding upstream 397541 90548240 ~ 90602774 (-)
LOC118966735 LOC106564289 coding upstream 495279 90645978 ~ 90657019 (-)
LOC118966736 LOC106585883 coding upstream 542880 90693579 ~ 90695233 (-)
G99995 NA non-coding downstream 4954 90124595 ~ 90137490 (-)
G99951 NA non-coding downstream 33242 90106061 ~ 90109202 (-)
G99991 NA non-coding downstream 36819 90104240 ~ 90105625 (-)
G99987 NA non-coding downstream 46542 90095201 ~ 90095902 (-)
G99978 NA non-coding downstream 59653 90082488 ~ 90082791 (-)
G99957 NA non-coding upstream 26085 90176784 ~ 90177309 (-)
G100023 NA non-coding upstream 46904 90197603 ~ 90199466 (-)
G100024 NA non-coding upstream 47326 90198025 ~ 90199853 (-)
G100051 NA non-coding upstream 105116 90255815 ~ 90256156 (-)
G100076 NA non-coding upstream 158214 90308913 ~ 90310511 (-)
G99602 NA other downstream 178239 89963873 ~ 89964205 (-)
G99595 NA other downstream 184528 89957392 ~ 89957916 (-)
G99035 NA other downstream 852388 89287214 ~ 89290056 (-)
ghitm LOC100136239 other downstream 890356 89223150 ~ 89270371 (-)
G98878 NA other downstream 1066206 89075847 ~ 89076238 (-)
G100197 NA other upstream 476834 90625080 ~ 90858972 (-)
LOC110516041 jakmip3 other upstream 832036 90982735 ~ 91072716 (-)
G100582 NA other upstream 1082041 91232740 ~ 91233788 (-)
LOC110531398 glrx3 other upstream 1641880 91791792 ~ 91832379 (-)
G102060 NA other upstream 2440882 92591581 ~ 92595514 (-)

Expression

LOC110515023(LOC106594692) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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LOC110515023(LOC106594692) Expression in each Bioproject

Bar chart with 21 bars.
LOC110515023(LOC106594692) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network