Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110518596 |
| gene name | pald1 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 90157260 ~ 90317809 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| pald1 | Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in peptidyl-tyrosine dephosphorylation. Located in cytosol. |
| description |
|---|
| PREDICTED: paladin-like, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036988516.1 | False | 6095 | mRNA | 0.47 | 20 | 90157260 | 90317809 |
| XR_005053303.1 | False | 6026 | mRNA | 0.47 | 21 | 90157260 | 90317809 |
| XR_005053304.1 | False | 6029 | mRNA | 0.47 | 21 | 90157260 | 90317809 |
| XM_036988521.1 | False | 6213 | mRNA | 0.47 | 20 | 90176960 | 90317809 |
| TU110547 | False | 1314 | TUCP | 0.53 | 6 | 90176535 | 90203637 |
| TU110545 | False | 1151 | TUCP | 0.54 | 5 | 90176810 | 90203637 |
| TU110541 | True | 306 | lncRNA | 0.53 | 3 | 90230151 | 90231687 |
90,040,000
90,060,000
90,080,000
90,100,000
90,120,000
90,140,000
90,160,000
90,180,000
90,200,000
90,220,000
90,240,000
90,260,000
90,280,000
90,300,000
90,320,000
90,340,000
90,360,000
NC_048565.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118966076 | spock2 | coding | upstream | 54340 | 89982567 ~ 90102920 (+) |
| LOC110489354 | LOC106592879 | coding | upstream | 186601 | 89920461 ~ 89970659 (+) |
| LOC110510825 | djb12 | coding | upstream | 257810 | 89883039 ~ 89899450 (+) |
| LOC110531805 | LOC106597856 | coding | upstream | 283274 | 89847512 ~ 89873986 (+) |
| LOC118936687 | LOC106577393 | coding | upstream | 312064 | 89820375 ~ 89845196 (+) |
| LOC110531531 | LOC106577352 | coding | downstream | 24626 | 90342435 ~ 90467909 (+) |
| LOC110532996 | LOC106577384 | coding | downstream | 212482 | 90530291 ~ 90542247 (+) |
| LOC110519808 | LOC106564289 | coding | downstream | 298838 | 90616647 ~ 90639428 (+) |
| LOC118966082 | LOC106564289 | coding | downstream | 353812 | 90671621 ~ 90690120 (+) |
| LOC110515411 | LOC106564289 | coding | downstream | 405073 | 90722882 ~ 90742121 (+) |
| G99661 | NA | non-coding | upstream | 29044 | 90127408 ~ 90128216 (+) |
| G99660 | NA | non-coding | upstream | 39140 | 90117746 ~ 90118120 (+) |
| G99613 | NA | non-coding | upstream | 46948 | 90106065 ~ 90110312 (+) |
| G99652 | NA | non-coding | upstream | 64883 | 90091296 ~ 90092377 (+) |
| G99607 | NA | non-coding | upstream | 181434 | 89975389 ~ 89975826 (+) |
| G99773 | NA | non-coding | downstream | 52625 | 90370434 ~ 90370787 (+) |
| G99774 | NA | non-coding | downstream | 55049 | 90372858 ~ 90373127 (+) |
| G99775 | NA | non-coding | downstream | 56897 | 90374706 ~ 90375701 (+) |
| G99779 | NA | non-coding | downstream | 64804 | 90382613 ~ 90385416 (+) |
| G99794 | NA | non-coding | downstream | 86263 | 90404072 ~ 90404485 (+) |
| G99488 | NA | other | upstream | 192817 | 89963873 ~ 89964443 (+) |
| G99486 | NA | other | upstream | 201641 | 89955026 ~ 89955619 (+) |
| G99484 | NA | other | upstream | 206376 | 89949439 ~ 89950884 (+) |
| G99470 | NA | other | upstream | 239140 | 89915080 ~ 89918120 (+) |
| G99466 | NA | other | upstream | 248826 | 89907772 ~ 89908434 (+) |
| G99868 | NA | other | downstream | 281917 | 90599726 ~ 90600738 (+) |
| LOC118966085 | LOC106595486 | other | downstream | 329422 | 90647231 ~ 90806871 (+) |
| G99880 | NA | other | downstream | 426150 | 90643871 ~ 90802329 (+) |
| LOC110531710 | LOC106592262 | other | downstream | 552803 | 90870561 ~ 90896084 (+) |
| LOC118966074 | NA | coding | upstream | 392924 | 89835279 ~ 89837227 (+) |
| G99704 | NA | non-coding | upstream | 23909 | 90205666 ~ 90206242 (+) |
| G99690 | NA | non-coding | upstream | 34164 | 90195753 ~ 90195987 (+) |
| G99698 | NA | non-coding | upstream | 39202 | 90190321 ~ 90190949 (+) |
| G99716 | NA | non-coding | downstream | 2026 | 90233713 ~ 90234914 (+) |
| G99719 | NA | non-coding | downstream | 23456 | 90255143 ~ 90255647 (+) |
| G99727 | NA | non-coding | downstream | 38313 | 90270000 ~ 90272252 (+) |
| LOC110518596 | pald1 | other | upstream | 26514 | 90157260 ~ 90317809 (+) |
