LOC118966735 (LOC106564289)


Basic Information

Item Value
gene id LOC118966735
gene name LOC106564289
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 90645978 ~ 90657019 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118966735
atgagagaggtacAGGATAGAGaccttcTAGAGAAGTCCAGAGTGTCCTTGCAGCTTCCCGATGAGAGAGGTTACCACATCTTCTTCCTGATGATGACCAATCACAAACCTGACATTATTGAAATGTCACTCATCACCACCAACCCCTACGACTTCCCCATGTGCAGTCAGGGTCAGATCACTGTGGCCAGCATCAACGACAAGGAAGAGCTGGATGCCACAGACGATGCCATTACAATCCTGGGCTTCACTAATGATGAGAAGATGAGCATCTACAAGCTGACAGGAGCTGTCTGCACCATGGCAACTTGAAATTCAAGCAGAAGCAGCGTGAGGAGCAGGCCGAGCCAGACGGCACAGAGGTGGCTGATAAAATCGGCTACCTGCTGGGCCTGAACTCAGCTGAGATGCTGAAGGCTCTGTGCTACCCCAGAGTGAAGGTCGGCAACGAGTATGTGACCAAGGGACAGACTGTGCCTCAGGTTAATAACTCAGTCTCGGCTCTGGCCAAGTCCATCTATGAGAGGATGTTCTTGTGGATGGTCATCCGTATCAACGAGATGTTGGACACCAAGAATCCAAGGCAGTTCTACATCGGTGTGCTCGACATTGCCGGGTTTGAGATCTTTGACTACAACAGCATGGAGCAGCTGTGCATCAACTTCACCAATGAGAAACTGCAacagtttttcaaccacaccatgtTCGTCCTGGAACAAGAGGAGTACAAGAAGGAGGGAATCGTCTGGGCCTTCATTGACTTCGGCATGGACTTGGCTGCCTGCATTGAGCTTATTGAGAAGCCATTGGGCATCTTCTCCATCCTTGAAGAGGAGTGCATGTTCCCCAAGGCTTCAGACACTTCCTTCAAGAACAAGCTGTATGACCAGCATCTTGGTAAAAACAAGGCATTTGAGAAGCCCAAGCCAGCCAAAGGCAAGGCAGAGGCCCACTTCTCCCTGGTGCACTATGCCGGCACTGTGGACTACAACATCACTGGCTGGCTGGAGAAGAACAAGGACCCCCTGAACGACTCAGTTCTTCAGCTGTACGGGAAGTCTTCAGTCAAACTGATGGCAACCCTGTATGTCGCTGCCCCACCTGAGGATACAACCAAGAAAGGAGGCAAGAAGAAGGGTGGTTCCATGCAGACTGTGTCCTCCCAATTCAGGGAGAACTTACATAAGCTGATGACCAACTTGAGGAGCACTCATCCTCACTTTGTACGCTGCCTGATCCCCAACGAGTCAAAGACTCCAGGTCTGATGGAGAACTTTCTGGTTATCCACCAGCTCAGGTGTAATGGTGTTCTGGAGGGTATCAGGATCTGCAGGAAGGGCTTCCCCAGCAGAATCATCTATGCTGACTTCAAGCAGAgGTACAAAATACTGAATGCCAGTGTCATCCCCGAGGGCCAGTTCATGGACAACAAGAAGGCTTCTGAGAAGCTGCTTGGgtccattgatgtgaatcacgaggactacaagtttggacacaccaagGTGTTCTTCAAAGCCGGTCTGCTGGGTgtcctggaggagatgagagatgagaagcTGGCCTCTCTGGTCGGCATGGTCCAGGCTCTCAGCCGTGGATTCCTCATGAGGAGAGAGTTCACcaagatgatggagaggagAGATTCCGTCTTCACCATCCAGTACAACATCCGTTCATTCATGAATGTGAAAACCTGGCCATGGATGAAGTTGTACTTCAAGATCAAGCCCCTGCTGCAGAGCGCTGAGACTGAGAAGGAGCTGGCCAACATGAAGGAGAACTATGAGAAGATGACGTCGGACTTGGCCAAGGCTCTGGCCAAGAAGAAGGAGTTGGAGGAGAAGATGGTGGCCATGGTGCAGGAGAAGAATGACCTGGCGCTTCAAGTCGCATCTGATTCAGAGAATCTGAACGATGCTGAGGAAAGGTGCGAGGGGCTCATCAAGAGCAAGATCCAGCTGGAGGCCAAACTCAAAGAGACGACTGAGaggctggaggatgaggaggagatgaaTGCTGAGTTGACTGCCAAGAAGAAGAAGCTGGAGGACGagtgctctgagctgaagaaggaCATTGATGACCTGGAGCTCACCTAGGCCAAAGTGGAGAAGGAGAAGCACGCCACTGAAAACAAGGTTAAAAAGCTGACAGAGGAGATGGCGTCTATGGATGAGAGTGTTGCCAAGCTGACCAAGGAGAAGAAAGCCCTCCAAGAGGCCCACCAGCAGACACTGGACgacctgcaggcagaggaggacaAAGTCAACACTCTGACCAAGGCCAAGACCAAGCTGGAACAGCAAGTGGACGACCTTGAGGGTTCTCTGGAGCAAGAGAAGAAGCTCCGTATGGACCTTGAGAGAGCCAAGAGAAAGCTGGAGGGAGATCTGAAACTGGCCCAGGAGTCCATAATGGACCTGGAGAATGACAAGCAGCAGTCTGATGAGAAAATCAAGAAGAAGGAGTTTGAGACCACCCAGCTCCTCAGCAAGATAGAGGATGAGCAGTCTCTGGGAGCTCAGCTGCAGAAGAAGATCAAGGAACTCcagGCCCGTattgaggagctggaggaggaaatTGAGGCTGAGCGTGCTGCCAGGGCCAAGGTTGAGAAGCAGAGGGACGATCTCTCCAGGGAACTTGAAGAGATCAGCGAGAGACTGGAGGAGGCCGGAGGCGCCACTGCTGCTCAGATTGAGATGAACAAGAAGCGCGAGGCTGAGTTCCAGAAGCTGCGTCGTGATCTTGAAGAGTCCACCCTGCAGCATGAGGCCACAGCCGCCGCTCTGCGCAAGAAGCAGGCCGACAGTGTGGCTGAGCTCGGGGAGCAGATCGACAACCTGCAGCGCGTCAAGCagaagctggagaaggagaagagcgaGTACAAGATGGAGATTGATGACCTCTCCAGCAACATGGAGGCTGTCGCCAAGGCTAAGGGCAATCTGGAGAAGATGTGCCGTACTCTTGAGGACCAGCTGAGCGAGCTCAAGACTAAGAATGATGAGAATGCTCGCCAGGTCAACGACATCAGCGGACAGAGGGCCAGACTCCTGACAGAAAATGGTGAGTTTGGTCgccagctggaggagaaggaaGCCCTGGTGTCTCAGCTGACCAGAGGCAAACAGGCCTTCACCCagcaggtggaggagctgaagagaCTGATTGAGGAGGAGGTCAAGGCTAAAAACGCACTGGCCCATGGTGTCCAGTCTGCCCGCCATGATTGTGATCTCCTGAGAGAGCAGtttgaggaggagcaggaggccaAGGCAGAGCTGCAGCGCGGCATGTCCAAGGCCAACAGTGAGGTGGCTCAGTGGAGGACTAAGTATGAAACTGATGCCATCCAACGcacagaggagctggaggaggccaAGAAGAAGCTGGCCCAGCGTCTGCAGGAGGCTGAGGAGACCATTGAGGCGACCAACTCAAAGTGTGCCTCCCTGGAGAAGACCAAGCAGAGActgcagggagaggtggaggacctCATGATTGACGTTGAGAGAGCCAACGCCATGGCCGCCAACCAATATTTGAAACTGGTATCATTTCCTATTTATTATTCCTCCAGTGGTGATCTTTTGTTTTGGACAGGCAGACCAGTTGTATAAGTGAAGcatttagag

Function

NR:

description
myosin heavy chain, fast skeletal muscle isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118966735 True 3638 mRNA 0.53 23 90645978 90657019

Neighbor

gene id symbol gene type direction distance location
LOC110531748 polr3a coding downstream 43204 90548240 ~ 90602774 (-)
LOC110532927 LOC106577426 coding downstream 147830 90482721 ~ 90498148 (-)
LOC110515024 LOC106613759 coding downstream 489660 90151430 ~ 90156318 (-)
LOC110515023 LOC106594692 coding downstream 495279 90142444 ~ 90150699 (-)
LOC110515022 LOC106560865 coding downstream 504148 90116501 ~ 90141830 (-)
LOC118966736 LOC106585883 coding upstream 36560 90693579 ~ 90695233 (-)
LOC118966737 LOC106577420 coding upstream 38262 90695281 ~ 90696935 (-)
LOC118966738 LOC106594844 coding upstream 88374 90745393 ~ 90746606 (-)
LOC118966739 LOC106577420 coding upstream 89633 90746652 ~ 90748391 (-)
LOC110513773 LOC107083051 coding upstream 146305 90803324 ~ 90813931 (-)
G100216 NA non-coding downstream 63754 90581994 ~ 90582224 (-)
G100215 NA non-coding downstream 64592 90581164 ~ 90581386 (-)
G100207 NA non-coding downstream 69726 90575532 ~ 90576252 (-)
G100192 NA non-coding downstream 80034 90564801 ~ 90565944 (-)
G100172 NA non-coding downstream 120346 90525344 ~ 90525632 (-)
G100227 LOC106595688 non-coding upstream 15246 90672265 ~ 90768876 (-)
G100247 NA non-coding upstream 46325 90703344 ~ 90755360 (-)
G100202 NA non-coding upstream 79207 90736226 ~ 90780709 (-)
G100201 NA non-coding upstream 84396 90741415 ~ 90798211 (-)
G100204 NA non-coding upstream 94127 90751146 ~ 90772190 (-)
G99602 NA other downstream 681773 89963873 ~ 89964205 (-)
G99595 NA other downstream 688062 89957392 ~ 89957916 (-)
G99035 NA other downstream 1355922 89287214 ~ 89290056 (-)
ghitm LOC100136239 other downstream 1393890 89223150 ~ 89270371 (-)
G98878 NA other downstream 1569740 89075847 ~ 89076238 (-)
LOC110516041 jakmip3 other upstream 325716 90982735 ~ 91072716 (-)
G100582 NA other upstream 575721 91232740 ~ 91233788 (-)
LOC110531398 glrx3 other upstream 1135560 91791792 ~ 91832379 (-)
G102060 NA other upstream 1934562 92591581 ~ 92595514 (-)
G102083 NA other upstream 1980279 92637298 ~ 92638881 (-)

Expression


Co-expression Network