Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118936689 |
| gene name | dpysl4 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 90919995 ~ 90970591 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| dpysl4 | Predicted to enable hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds. Predicted to act upstream of or within neuron death and neuron projection guidance. Predicted to be located in cytoplasm. Is expressed in nervous system; spinal cord neural tube; and trigeminal placode. Orthologous to human DPYSL4 (dihydropyrimidinase like 4). |
| description |
|---|
| dihydropyrimidinase-related protein 2-like |
| id | name | namespace |
|---|---|---|
| GO:0006208 | pyrimidine nucleobase catabolic process | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016812 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036988624.1 | False | 4007 | mRNA | 0.47 | 14 | 90919995 | 90969586 |
| XM_036988621.1 | False | 4103 | mRNA | 0.47 | 14 | 90919995 | 90970589 |
| XM_036988617.1 | True | 4111 | mRNA | 0.47 | 14 | 90919995 | 90970591 |
90,900,000
90,910,000
90,920,000
90,930,000
90,940,000
90,950,000
90,960,000
90,970,000
90,980,000
90,990,000
91,000,000
NC_048565.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110513773 | LOC107083051 | coding | downstream | 106064 | 90803324 ~ 90813931 (-) |
| LOC118966739 | LOC106577420 | coding | downstream | 171604 | 90746652 ~ 90748391 (-) |
| LOC118966738 | LOC106594844 | coding | downstream | 173389 | 90745393 ~ 90746606 (-) |
| LOC118966737 | LOC106577420 | coding | downstream | 223060 | 90695281 ~ 90696935 (-) |
| LOC118966736 | LOC106585883 | coding | downstream | 224762 | 90693579 ~ 90695233 (-) |
| LOC110516041 | jakmip3 | coding | upstream | 12676 | 90982735 ~ 91072716 (-) |
| LOC110531579 | LOC106577354 | coding | upstream | 119820 | 91090411 ~ 91119379 (-) |
| LOC118966091 | tcerg1l | coding | upstream | 346577 | 91317168 ~ 91530447 (-) |
| LOC110531398 | glrx3 | coding | upstream | 823027 | 91791792 ~ 91832379 (-) |
| LOC118966740 | NA | coding | upstream | 1573298 | 92543889 ~ 92544887 (-) |
| G100384 | NA | non-coding | downstream | 141 | 90919564 ~ 90919854 (-) |
| G100296 | NA | non-coding | downstream | 1304 | 90918415 ~ 90918691 (-) |
| G100291 | LOC106577418 | non-coding | downstream | 8108 | 90910951 ~ 90911887 (-) |
| G100288 | NA | non-coding | downstream | 10649 | 90908489 ~ 90909346 (-) |
| G100282 | NA | non-coding | downstream | 21942 | 90895687 ~ 90898053 (-) |
| G100400 | NA | non-coding | upstream | 22545 | 90993136 ~ 90993693 (-) |
| G100403 | NA | non-coding | upstream | 29818 | 91000409 ~ 91007906 (-) |
| G100426 | NA | non-coding | upstream | 76377 | 91046968 ~ 91047820 (-) |
| G100430 | NA | non-coding | upstream | 82113 | 91052704 ~ 91053040 (-) |
| G100431 | NA | non-coding | upstream | 88724 | 91059315 ~ 91061984 (-) |
| G100197 | NA | other | downstream | 61023 | 90625080 ~ 90858972 (-) |
| G99602 | NA | other | downstream | 955790 | 89963873 ~ 89964205 (-) |
| G99595 | NA | other | downstream | 962079 | 89957392 ~ 89957916 (-) |
| G99035 | NA | other | downstream | 1629939 | 89287214 ~ 89290056 (-) |
| ghitm | LOC100136239 | other | downstream | 1667907 | 89223150 ~ 89270371 (-) |
| G100582 | NA | other | upstream | 262149 | 91232740 ~ 91233788 (-) |
| G102060 | NA | other | upstream | 1620990 | 92591581 ~ 92595514 (-) |
| G102083 | NA | other | upstream | 1666707 | 92637298 ~ 92638881 (-) |
