LOC110531588 (LOC106560822)


Basic Information

Item Value
gene id LOC110531588
gene name LOC106560822
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 91076855 ~ 91086592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988655.1
aacggaagcaaatgCACAGAGCAAACGGAACGAACGGGGAAGgatctacctgaatttgtccaatagaaactctcgttttctTTGAAACTGTTTCCTTTACAAAACGTTTCGCAACGGAAttcgactaatgaatacaccagTGAGTGATAAGGGACCAGATTTGATATTCATGGGGCAAACCCGTGTAGGCCACACAGCTGGCCAAGTTTAGTCACATGCTTGTTGTTATTGTTCTGGTAGCCTAGTGCTTTCCTGAATGGTCTGCACTCGATCTAAACCTTTCTCCCAATTCAGAGGCATCAGAATAATATTGTCTACATTCGGATTTGTAATTACAGGATTCTTCCAAATATTTAGGACGTTTGACTCGGAACGATCGCGACGCAAAGGGGGAGTCAATCAAATACGCATTGCGTCCCTTATTTACCAACATGACGGAAGACAAACAAAGTGTCATCGAGGAAAATTTGCAGGGTTCCTGGGTGGAGCTGCACTTTAACAATGGCAACAGTGCTGGCTCACCAGCACATGGGGCTGCTGGTGTGGAGGAAGAGCAGGTACCAGGCTCTGCCACTGAGGTACCAGGCTCTGCCACTGAGCTACCAGGCTCTGCCACTGAGCTACCAGGCTCTGCCACTGAGCTACCAGGCTCTGACACTGAGCTACCAGGCTCTGCCACAGAGCTACCAGGCTCTGGGTTAGGTGCCTTTGCCTCAGTCCATGGTGGAGACCTGATGGCTGGGTCTACCTCTGCGTCGGTCCTGCCtgggtctctctctgcctctacccaGGGAGGTGACCTGATTCCTGGGTCAGGGTCTGCGTCTGGCTCAGTCCAGGGAGGGGTGGACTTGGAGAAGATGTTGTTAGACGCCCAGCACGAGTCAGGAAGAAGCAGCTCCAGGGGCAGTGTTCCCTGTGACAGtccTCCGAGACCCCAGACTCCTTTGCTCCGCCGTGGCTCAGAAGTGCACAGCTCAGGAGAGAAGAACAGCTCACAGTCTGAAGAAGACTACCTAGAACGGAGACGTGAAGTGGAGAACCTGATGAAGAAGAACGCAGACTGGATCTGGGACTGGTCCAGTAGACCTGAGAACATTCAACGCAaGGGGTTTGTTCTGAAGCATCCCAAACGTATCAACCCTCTCAGCATCAGAAACACCAGCGTCATGAAGAACGGAGGGATCTTCTCTGCAGAGTTCCTCAAACTTTTCCTTCCTTCTCTGCTCATATCCCACGTACTGGCCATCGGTCTGGGGGTGTACATTGGGAGACGTCTAAGTACCTCAGTGACCAGTACCTTCTAAAGGGACACTCCGCTGGACTGGAACAACATGGTTTTTTGGCTCCAACACCGTTACCTTCCACTGCTGCTAGCTTTGAAGTGGTTCGCTTATTAGATACAGATAGGCAACATCTGTCATGTGTCCCCCAACTCCGCTCAATACATGgctcaaaatggcaccctattccctacatagtgcactacttttgaccagttccCATAggactctgatcaaaagtagtgcactatatagggtatagggttccatttgggacacacttcCTTTTTGTTTTCCCCTGGCGGTGAGCAGTCCACCCTGCCTGTATCTGTATTGTACCCCTGTGAATAGTGTTGGCTTTTCCCTTAGTTCCCAGAGCTGCTTTTAAATAACCCTGCTCCACTGGAAAGTAGAACCCGGTGTTCCTCCTCCATCTCACTGGACGATCTCTGGGTAGGGGGGCCATCTAATAATCAACCTTTTAAGAGCCATCGTTGTCAACGGCTAGCTAGCGTTCACTGTCAGTCATTTTCAAGCCATTTTATCTTGCTCTGAGTTGAGAAATTTTTGTAGTAGAAGACTTTTGAGGTAATGATATTACAGTAAGAAGGTGATGATACAGAAAAGCACTGTGAATTTCTCAGCGTTGAGATATGTACGGAGAAGAAAAGGGAATGGGTCAGACAAGAAAGCTGGACGTTGTATTTGAGGGAGCTGTTGCTTGTTTTATCAGAATGTCCTTGGTTTGGGGAAAAAGGGATCAAGACATTCAACCGAAATGTTATTTCTGACCCGGATCCTTCTCATGGATCATGAAGGGCTTTAATAATAAAACAAGGTTTCAGGGGAAATGAAAAAGGTTTGAAATAGATCAACCTTGAAAAGTGTTTGAGGAAGTAGAAGGAGAATGAATGTATGGAGCATCTTCCATTAGATCCCAGATTAGGTCGAACGGGAGCGTCGGGGTTTTGGTTCTGTCGGCACCTTTCAGTTTATTGGTGTTATTTTTTCACTCAGGGTTGTTTTCTGTGACAACAAGGTGTCCCATTCACTGAATATGCATGTGTATGGGTAGAATTGTACATTAGATGTGGCACTATGTAAACCGGAAGTGTTTTAATGGTCGGTGGCATGTTAATGGTCTACGTGACCATTTGAAATACACAAAAACAGCTTTTCTACCACTACTGCATAAGACCACACATCCCCATATCAAATATTTTAGGGGAAAATATAGACTTTCACGCTTGTAATCATGAGGGAATTTAGAAATATCTTATTTTGCCTTACTTATACTTCACTCCTAATTAAATACGAAATCTCAGTATCCAGAATGCTTCAGTATGTTTTTGTTCTAAGAATGAAGAGAGCAACAGAGGCTTTCCTGAGTTATGCCTTGAAGAGGCATTTACCAATCTGTTTCTGCATGTCTTGTAGAGCTGGTCAACATGTCAAGTGTCTATGTGAAGTTGAGAACAGTTGGAATTGTATCTGAAAAATAAAATGGAATCATAAAAATA
>XM_036988660.1
acggaagcaaatgCACAGAGCAAACGGAACGAACGGGGAAGgatctacctgaatttgtccaatagaaactctcgttttctTTGAAACTGTTTCCTTTACAAAACGTTTCGCAACGGAAttcgactaatgaatacaccagTGAGTGATAAGGGACCAGATTTGATATTCATGGGGCAAACCCGTGTAGGCCACACAGCTGGCCAAGTTTAGTCACATGCTTGTTGTTATTGTTCTGGTAGCCTAGTGCTTTCCTGAATGGTCTGCACTCGATCTAAACCTTTCTCCCAATTCAGAGGCATCAGAATAATATTGTCTACATTCGGATTTGTAATTACAGGATTCTTCCAAATATTTAGGACGTTTGACTCGGAACGATCGCGACGCAAAGGGGGAGTCAATCAAATACGCATTGCGTCCCTTATTTACCAACATGACGGAAGACAAACAAAGTGTCATCGAGGAAAATTTGCAGGGTTCCTGGGTGGAGCTGCACTTTAACAATGGCAACAGTGCTGGCTCACCAGCACATGGGGCTGCTGGTGTGGAGGAAGAGCAGGTACCAGGCTCTGCCACTGAGGTACCAGGCTCTGCCACTGAGCTACCAGGCTCTGCCACTGAGCTACCAGGCTCTGCCACTGAGCTACCAGGCTCTGGGTTAGGTGCCTTTGCCTCAGTCCATGGTGGAGACCTGATGGCTGGGTCTACCTCTGCGTCGGTCCTGCCtgggtctctctctgcctctacccaGGGAGGTGACCTGATTCCTGGGTCAGGGTCTGCGTCTGGCTCAGTCCAGGGAGGGGTGGACTTGGAGAAGATGTTGTTAGACGCCCAGCACGAGTCAGGAAGAAGCAGCTCCAGGGGCAGTGTTCCCTGTGACAGtccTCCGAGACCCCAGACTCCTTTGCTCCGCCGTGGCTCAGAAGTGCACAGCTCAGGAGAGAAGAACAGCTCACAGTCTGAAGAAGACTACCTAGAACGGAGACGTGAAGTGGAGAACCTGATGAAGAAGAACGCAGACTGGATCTGGGACTGGTCCAGTAGACCTGAGAACATTCAACGCAaGGGGTTTGTTCTGAAGCATCCCAAACGTATCAACCCTCTCAGCATCAGAAACACCAGCGTCATGAAGAACGGAGGGATCTTCTCTGCAGAGTTCCTCAAACTTTTCCTTCCTTCTCTGCTCATATCCCACGTACTGGCCATCGGTCTGGGGGTGTACATTGGGAGACGTCTAAGTACCTCAGTGACCAGTACCTTCTAAAGGGACACTCCGCTGGACTGGAACAACATGGTTTTTTGGCTCCAACACCGTTACCTTCCACTGCTGCTAGCTTTGAAGTGGTTCGCTTATTAGATACAGATAGGCAACATCTGTCATGTGTCCCCCAACTCCGCTCAATACATGgctcaaaatggcaccctattccctacatagtgcactacttttgaccagttccCATAggactctgatcaaaagtagtgcactatatagggtatagggttccatttgggacacacttcCTTTTTGTTTTCCCCTGGCGGTGAGCAGTCCACCCTGCCTGTATCTGTATTGTACCCCTGTGAATAGTGTTGGCTTTTCCCTTAGTTCCCAGAGCTGCTTTTAAATAACCCTGCTCCACTGGAAAGTAGAACCCGGTGTTCCTCCTCCATCTCACTGGACGATCTCTGGGTAGGGGGGCCATCTAATAATCAACCTTTTAAGAGCCATCGTTGTCAACGGCTAGCTAGCGTTCACTGTCAGTCATTTTCAAGCCATTTTATCTTGCTCTGAGTTGAGAAATTTTTGTAGTAGAAGACTTTTGAGGTAATGATATTACAGTAAGAAGGTGATGATACAGAAAAGCACTGTGAATTTCTCAGCGTTGAGATATGTACGGAGAAGAAAAGGGAATGGGTCAGACAAGAAAGCTGGACGTTGTATTTGAGGGAGCTGTTGCTTGTTTTATCAGAATGTCCTTGGTTTGGGGAAAAAGGGATCAAGACATTCAACCGAAATGTTATTTCTGACCCGGATCCTTCTCATGGATCATGAAGGGCTTTAATAATAAAACAAGGTTTCAGGGGAAATGAAAAAGGTTTGAAATAGATCAACCTTGAAAAGTGTTTGAGGAAGTAGAAGGAGAATGAATGTATGGAGCATCTTCCATTAGATCCCAGATTAGGTCGAACGGGAGCGTCGGGGTTTTGGTTCTGTCGGCACCTTTCAGTTTATTGGTGTTATTTTTTCACTCAGGGTTGTTTTCTGTGACAACAAGGTGTCCCATTCACTGAATATGCATGTGTATGGGTAGAATTGTACATTAGATGTGGCACTATGTAAACCGGAAGTGTTTTAATGGTCGGTGGCATGTTAATGGTCTACGTGACCATTTGAAATACACAAAAACAGCTTTTCTACCACTACTGCATAAGACCACACATCCCCATATCAAATATTTTAGGGGAAAATATAGACTTTCACGCTTGTAATCATGAGGGAATTTAGAAATATCTTATTTTGCCTTACTTATACTTCACTCCTAATTAAATACGAAATCTCAGTATCCAGAATGCTTCAGTATGTTTTTGTTCTAAGAATGAAGAGAGCAACAGAGGCTTTCCTGAGTTATGCCTTGAAGAGGCATTTACCAATCTGTTTCTGCATGTCTTGTAGAGCTGGTCAACATGTCAAGTGTCTATGTGAAGTTGAGAACAGTTGGAATTGTATCTGAAAAATAAAATGGAATCATAAAAATA
>TU111611
TTTTTGTAGTAGAAGACTTTTGAGGTAATGATATTACAGTAAGAAGGTGATGATACAGAAAAGCACTGTGAATTTCTCAGCGTTGAGATATGTACGGAGAAGAAAAGGGAATGGGTCAGACAAGAAAGCTGGACGTTGTATTTGAGGGAGCTGTTGCTTGTTTTATCAGAATGTCCTTGGTTTGGGGAAAAAGGGATCAAGACATTCAACCGAAATGTTATTTCTGACCCGGATCCTTCTCATGGATCATGAAGGGCTTTAATAATAAAACAAGGTTTCAGGGGAAATGAAAAAGGTTTGAAATAGATCAACCTTGAAAAGTGTTTGAGGAAGTAGAAGGAGAATGAATGTATGGAGCATCTTCCATTAGATCCCAGATTAGGTCGAACGGGAGCGTCGGGGTTTTGGTTCTGTCGGCACCTTTCAGTTTATTGGTGTTATTTTTTCACTCAGGGTTGTTTTCTGTGACAACAAGGTGTCCCATTCACTGAATATGCATGTGTATGGGTAGAATTGTACATTAGATGTGGCACTATGTAAACCGGAAGTGTTTTAATGGTCGGTGGCATGTTAATGGTCTACGTGACCATTTGAAATACACAAAAACAGCTTTTCTACCACTACTGCATAAGACCACACATCCCCATATCAAATATTTTAGGGGAAAATATAGACTTTCACGCTTGTAATCATGAGGGAATTTAGAAATATCTTATTTTGCCTTACTTATACTTCACTCCTAATTAAATACGAAATCTCAGTATCCAGAATGCTTCAGTATGTTTTTGTTCTAAGAATGAAGAGAGCAACAGAGGCTTTCCTGAGTTATGCCTTGAAGAGGCATTTACCAATCTGTTTCTGCATGTCTTGTAGAGCTGGTCAACATGTCAAGTGTCTATGTGAA
>TU111610
GAGATATGTACGGAGAAGAAAAGGGAATGGGTCAGACAAGAAAGCTGGACGTTGTATTTGAGGGAGCTGTTGCTTGTTTTATCAGAATGTCCTTGGTTTGGGGAAAAAGGGATCAAGACATTCAACCGAAATGTTATTTCTGACCCGGATCCTTCTCATGGATCATGAAGGGCTTTAATAATAAAACAAGGTTTCAGGGGAAATGAAAAAGGTTTGAAATAGATCAACCTTGAAAAGTGTTTGAGGAAGTAGAAGGAGAATGAATGTATGGAGCATCTTCCATTAGATCCCAGATTAGGTCGAACGGGAGCGTCGGGGTTTTGGTTCTGTCGGCACCTTTCAGTTTATTGGTGTTATTTTTTCACTCAGGGTTGTTTTCTGTGACAACAAGGTGTCCCATTCACTGAATATGCATGTGTATGGGTAGAATTGTACATTAGATGTGGCACTATGTAAACCGGAAGTGTTTTAATGGTCGGTGGCATGTTAATGGTCTACGTGACCATTTGAAATACACAAAAACAGCTTTTCTACCACTACTGCATAAGACCACACATCCCCATATCAAATATTTTAGGGGAAAATATAGACTTTCACGCTTGTAATCATGAGGGAATTTAGAAATATCTTATTTTGCCTTACTTATACTTCACTCCTAATTAAATACGAAATCTCAGTATCCAGAATGCTTCAGTATGTTTTTGTTCTAAGAATGAAGAGAGCAACAGAGGCTTTCCTGAGTTATGCCTTGAAGAGGCATTTACCAATCTGTTTCTGCATGTCTTGTAGAGCTGGTCAACATGTCAAGTGTCTATGTGAA

Function

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005740 mitochondrial envelope cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988655.1 False 2803 mRNA 0.46 6 91076855 91086592
XM_036988660.1 False 2760 mRNA 0.46 7 91076856 91086592
TU111611 False 904 lncRNA 0.39 1 91085637 91086540
TU111610 True 820 lncRNA 0.37 1 91085721 91086540

Neighbor

gene id symbol gene type direction distance location
LOC110531853 LOC106577418 coding upstream 164998 90903245 ~ 90911857 (+)
LOC110531710 LOC106592262 coding upstream 180771 90870561 ~ 90896084 (+)
LOC110518968 LOC106564289 coding upstream 212303 90844513 ~ 90864552 (+)
LOC118966085 LOC106595486 coding upstream 278211 90647231 ~ 90806871 (+)
LOC110515411 LOC106564289 coding upstream 334734 90722882 ~ 90742121 (+)
LOC118966092 NA coding downstream 746640 91833232 ~ 91837213 (+)
LOC110531613 LOC106577355 coding downstream 790970 91877562 ~ 91884380 (+)
LOC110522569 LOC106613918 coding downstream 926160 92012752 ~ 92084472 (+)
LOC118964553 NA coding downstream 1273406 92359998 ~ 92362861 (+)
LOC110533005 clrn3 coding downstream 1940987 93027579 ~ 93034467 (+)
G100367 NA non-coding upstream 4049 91072430 ~ 91072806 (+)
G100366 NA non-coding upstream 5765 91070791 ~ 91071090 (+)
G100365 NA non-coding upstream 6429 91070126 ~ 91070426 (+)
G100360 NA non-coding upstream 20042 91056606 ~ 91056813 (+)
G100359 NA non-coding upstream 20519 91055610 ~ 91056336 (+)
G100456 NA non-coding downstream 35527 91122119 ~ 91122432 (+)
G100461 NA non-coding downstream 40092 91126684 ~ 91127507 (+)
G100472 NA non-coding downstream 70930 91157522 ~ 91158510 (+)
G100486 NA non-coding downstream 120905 91207497 ~ 91208396 (+)
G100488 NA non-coding downstream 124621 91211213 ~ 91212605 (+)
G99880 NA other upstream 274526 90643871 ~ 90802329 (+)
G99868 NA other upstream 476117 90599726 ~ 90600738 (+)
LOC110531531 LOC106577352 other upstream 732434 90342435 ~ 90467909 (+)
G100377 NA other downstream 22657 91109249 ~ 91110862 (+)
G101557 NA other downstream 1440427 92527019 ~ 92531819 (+)
G101642 LOC106594265 other downstream 1781084 92867676 ~ 92872700 (+)
G101737 NA other downstream 1929330 93015922 ~ 93016762 (+)
G100371 NA non-coding upstream 2916 91080666 ~ 91082721 (+)

Expression


Co-expression Network