LOC110531579 (LOC106577354)


Basic Information

Item Value
gene id LOC110531579
gene name LOC106577354
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 91090411 ~ 91119379 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988668.1
CAACTTTGTAGACGGGGGGCCCCCGCATCAGCGCGGCCTAAAAGCATTGCAAGTTTCTTGGCTAACAGGCAACCGAGCAGCTCTGACAATGTGTGCCAAAATGTATACTCCATAGTTAACTAGTTGCTATGTTGAAGTACACATTTAAAGGTGTCGGAGGAGGGAACGATTTCCAATGGTGCTTCTCTCAGGTGAAGGGAGCCATAGACGAAGATGTGGCTGAAGccgACATAATCTCAACGGTTGAGTTTAACTATTCTGGAGAACTACTAGCGACGGGAGACAAAGGAGGTCGTGTCGTCATTTTCCAACGGGAACAAGAGAGTAAAAACCGTCCTCATTCCAGAGGCGAATACAACGTGTACAGCACTTTCCAGAGCCATGAACCCGAGTTTGACTATTTAAAAAGCTTAGAAATCGAGGAGAAAATCAACAAGATAAGATGGTTACCTCAACAAAACGCTGCACACTCTCTGCTCTCAACAAACGACAAAACCATCAAGCTGTGGAAAATCAGCCAACGGGACAAAAGAGCAGAAGGCTACAACTTGAAAGACGAGGATGGAAGACTGAGAGATCCTTTCAGAATCACGTCGTTACGGGTGCCTGTGCTGCTGCCCATGGACCGGATGGTGGAGGCTAGTCCGAGGAGGATATTCGCTAACGCACACACATATCACATCAATTCCATCTCTGTAAACAGCGATCACGAAACGTACCTTTCGGCTGATGATCTCAGGGTTAACCTCTGGCACTTAGAAATCACTGATAGAAGTTTTAACATTGTAGATATAAAGCCTGCCAATATGGAGGAGCTGACAGAAGTCATCACAGCTGCAGAGTGCCATCCACACCAGTGTAATGTATTTGTGTACAGTAGCAGTAAGGGGACCATCCGCCTCTGTGACATGCGAGCTGCTGCCCTCTGTGATAGGCAAAGCAAATTCTTCGAGGAGCCAGAGGACCCTAGCAGCCGGTCCTTCTTCTCCGAGATCATCTCCTCAATATCGGATGTGAAGTTTAGCCACAGCGGCCGTTACATGATGACCAGAGACTACCTGTCAGTCAAGGTGTGGGATCTGAACATGGAAAACCGGCCTGTGGAGACCTATCAGGTGCACGAGTACCTCCGTAGCAAGCTCTGCTCGCTGTATGAAAACGACTGCATCTTCGACAAGTTCGAGTGCTGCTGGAACGGTGCTGACAGTGCCATCATGACGGGCTCGTACAACAACTTCTTCCGGATGTTTGACCGGAACACGCGGCGGGACGTCACGCTGGAGGCCTCTAGAGAGAACAGTAAACCTCGGGCCATCCTGAAGGCTCGCAAGGTGTCCACCGGGGGGAAGAGGAAGAAGGACGAGATCAGCGTAGACAGTCTGGACTTCAACAAGAAGATCCTGCACACCGCGTGGCACCCAAAGGAGAACGTCATCGCTGTCGCCGCCACCAACAACCTCTACATATTTCAGGACAAGATCAACTAAActtaacaacccccccccccacccctccgaAACTGTTCCGACCCTCCCCGAACCCAGCCATCATACCTACCTACCGCGAATGGACAGAAATCTTGTACGTTGTATAGGTAAAGAATAGTTGTTAAATCTGTTTAAGGAAACAACAGCAGCCTTGTCTGTCCTCCTAATGAAGAAGAAATGTGATGCGCTTGTTTCGTTgtgtagccagccagccagacggCCGGACGCCTGCTGGAGTCAGACGGCCTGTTTCTTTAGAGTCTGAGGTGTTGGTTGGTTTGCGTCCTGTCTCGTTGCGAGGGCAGACACAGGCAGGCAGGAGCCCCAGGTCTGACTCTGGACAGACTAGCCCGGGCCTGACTGCGGCAGAAACATCGATGGGACAGCGGCTCAACAAAGAGGCCCAAAAAAATGTCAGTTTAAAGTTTAGTGTATTTATTTAAAAGTCTGAGCCTTGTTTTACTTCCTATGATTCGACGACACATTATGGAATAAGGAGGAAAGATGTGTTGGAAGTCAGAATGAGATATTAGTCTCTCAACTGTAAATCTGGGCCTTGGAAGAAACTGAAATTAAATTAGCTTAAATAAAGTAAGGTTGCAAATTCCCAGGTAACTTTCCCGAAAAATCccaaggttttccagaaatcccattTGGAAGATTCCCAGAATCGGAAAAAGGAATGAGCAGGAAATGATCGGGGAATCCTGCCAACTAGGATGCTGGGAAAGTTAGGGGAAATGTTGCAGCCTTACTGATAACATTCCTCCTCCCTGGCCGACTCTCTCAGGCCTCCTCCGTGTTGGACCTTGTTAAGCTCTTCAACACAGGTCTCCATGTTTGGTCAGTGGACAATTGTttttggttattttttttaaaaagtttttgtttattattattttttttagtttttatccttctttttttcttcttctcatgTATAATAACATTTTACTCATTGACTGTATCTATATAACCACACCGTCTGGTGTCAACCACTTAATAAAAGTAACGAAAACCACAA
>XM_036988670.1
GCGTCGCAATGACGTCACCGTGTCACGTCGACTGTCACTTGTGCGCCATTTTGGATTTTtggaaatgaaatgaaaaaaaatcacGGGCATTTCTGTAAAGCCCATATTCACGACTCTAATAACTGTTTCCTTTTTAATAACCTTGTACTGAAATTACAATCCTTACAACTCTAATCACTATCGGGaagaccccctcccccctcccaaaaAAAAGAAGCCAGTTGTGTTGCAGAAAGTGACAATGGCAGGTGTCGGAGGAGGGAACGATTTCCAATGGTGCTTCTCTCAGGTGAAGGGAGCCATAGACGAAGATGTGGCTGAAGccgACATAATCTCAACGGTTGAGTTTAACTATTCTGGAGAACTACTAGCGACGGGAGACAAAGGAGGTCGTGTCGTCATTTTCCAACGGGAACAAGAGAGTAAAAACCGTCCTCATTCCAGAGGCGAATACAACGTGTACAGCACTTTCCAGAGCCATGAACCCGAGTTTGACTATTTAAAAAGCTTAGAAATCGAGGAGAAAATCAACAAGATAAGATGGTTACCTCAACAAAACGCTGCACACTCTCTGCTCTCAACAAACGACAAAACCATCAAGCTGTGGAAAATCAGCCAACGGGACAAAAGAGCAGAAGGCTACAACTTGAAAGACGAGGATGGAAGACTGAGAGATCCTTTCAGAATCACGTCGTTACGGGTGCCTGTGCTGCTGCCCATGGACCGGATGGTGGAGGCTAGTCCGAGGAGGATATTCGCTAACGCACACACATATCACATCAATTCCATCTCTGTAAACAGCGATCACGAAACGTACCTTTCGGCTGATGATCTCAGGGTTAACCTCTGGCACTTAGAAATCACTGATAGAAGTTTTAACATTGTAGATATAAAGCCTGCCAATATGGAGGAGCTGACAGAAGTCATCACAGCTGCAGAGTGCCATCCACACCAGTGTAATGTATTTGTGTACAGTAGCAGTAAGGGGACCATCCGCCTCTGTGACATGCGAGCTGCTGCCCTCTGTGATAGGCAAAGCAAATTCTTCGAGGAGCCAGAGGACCCTAGCAGCCGGTCCTTCTTCTCCGAGATCATCTCCTCAATATCGGATGTGAAGTTTAGCCACAGCGGCCGTTACATGATGACCAGAGACTACCTGTCAGTCAAGGTGTGGGATCTGAACATGGAAAACCGGCCTGTGGAGACCTATCAGGTGCACGAGTACCTCCGTAGCAAGCTCTGCTCGCTGTATGAAAACGACTGCATCTTCGACAAGTTCGAGTGCTGCTGGAACGGTGCTGACAGTGCCATCATGACGGGCTCGTACAACAACTTCTTCCGGATGTTTGACCGGAACACGCGGCGGGACGTCACGCTGGAGGCCTCTAGAGAGAACAGTAAACCTCGGGCCATCCTGAAGGCTCGCAAGGTGTCCACCGGGGGGAAGAGGAAGAAGGACGAGATCAGCGTAGACAGTCTGGACTTCAACAAGAAGATCCTGCACACCGCGTGGCACCCAAAGGAGAACGTCATCGCTGTCGCCGCCACCAACAACCTCTACATATTTCAGGACAAGATCAACTAAActtaacaaccccccc
>TU111691
TAGAAGTGTTACGCACTCAtgacctttttgttgttgttgtctctctctcagccgACATAATCTCAACGGTTGAGTTTAACTATTCTGGAGAACTACTAGCGACGGGAGACAAAGGAGGTCGTGTCGTCATTTTCCAACGGGAACAAGAGAGTAAAAACCGTCCTCATTCCAGAGGCGAATACAACGTGTACAGCACTTTCCAGAGCCATGAACCCGAGTTTGACTATTTAAAAAGCTTAGAAATCGAGGAGAAAATCAACAAGATAAGATGGTTACCTCAACAAAACGCTGCACACTCTCTGCTCTCAACAAACGACAAAACCATCAAGCTGTGGAAAATCAGCCAACGGGACAAAAGAGCAGAAGGCTACAACTTGAAAGACGAGGATGGAAGACTGAGAGATCCTTTCAGAATCACGTCGTTACGGGTATGTCTCCTCTCGTTCATCACCGTTTACCTGATATAGTTTTGAATGATCCCGTTCAGGGAAATATTATTgaca

Function

NR:

description
serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988668.1 False 2511 mRNA 0.47 10 91090411 91119121
XM_036988670.1 False 1601 mRNA 0.49 10 91091419 91119379
TU111691 True 503 lncRNA 0.43 3 91105443 91107034

Neighbor

gene id symbol gene type direction distance location
LOC110516041 jakmip3 coding downstream 17695 90982735 ~ 91072716 (-)
LOC118936689 dpysl4 coding downstream 119820 90919995 ~ 90970591 (-)
LOC110513773 LOC107083051 coding downstream 276480 90803324 ~ 90813931 (-)
LOC118966739 LOC106577420 coding downstream 342020 90746652 ~ 90748391 (-)
LOC118966738 LOC106594844 coding downstream 343805 90745393 ~ 90746606 (-)
LOC118966091 tcerg1l coding upstream 197789 91317168 ~ 91530447 (-)
LOC110531398 glrx3 coding upstream 674239 91791792 ~ 91832379 (-)
LOC118966740 NA coding upstream 1424510 92543889 ~ 92544887 (-)
LOC118966741 NA coding upstream 1497677 92617056 ~ 92622002 (-)
LOC118966742 NA coding upstream 1728085 92847464 ~ 92848944 (-)
G100442 NA non-coding downstream 1322 91088710 ~ 91089089 (-)
G100441 NA non-coding downstream 2307 91087805 ~ 91088104 (-)
G100416 NA non-coding downstream 2649 91086856 ~ 91087762 (-)
G100415 NA non-coding downstream 3871 91085890 ~ 91086540 (-)
G100435 NA non-coding downstream 19003 91071168 ~ 91071408 (-)
G100457 NA non-coding upstream 2664 91122043 ~ 91122276 (-)
G100462 NA non-coding upstream 7491 91126870 ~ 91127294 (-)
G100611 NA non-coding upstream 167650 91287029 ~ 91287766 (-)
G100777 NA non-coding upstream 259653 91379032 ~ 91379936 (-)
G100781 NA non-coding upstream 281635 91401014 ~ 91401652 (-)
G100197 NA other downstream 231439 90625080 ~ 90858972 (-)
G99602 NA other downstream 1126206 89963873 ~ 89964205 (-)
G99595 NA other downstream 1132495 89957392 ~ 89957916 (-)
G99035 NA other downstream 1800355 89287214 ~ 89290056 (-)
G100582 NA other upstream 113361 91232740 ~ 91233788 (-)
G102060 NA other upstream 1472202 92591581 ~ 92595514 (-)
G102083 NA other upstream 1517919 92637298 ~ 92638881 (-)
G102119 NA other upstream 1619634 92739013 ~ 92739530 (-)
G100446 NA non-coding downstream 2483 91102675 ~ 91102960 (-)
G100445 NA non-coding downstream 4255 91100594 ~ 91101188 (-)
G100443 NA non-coding downstream 11016 91093702 ~ 91094427 (-)
G100448 NA non-coding upstream 2275 91109309 ~ 91110819 (-)
G100450 NA non-coding upstream 5810 91112844 ~ 91113285 (-)

Expression


Co-expression Network