LOC110531398 (glrx3)


Basic Information

Item Value
gene id LOC110531398
gene name glrx3
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 91791792 ~ 91832379 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988702.1
TAGAACACAATCACTCGGTGAGCGATTACACACGTCTGAGAGAACAGTAAGTGTTGTGTCTGCTGGAAATCCACATAGAACACAATCACTCGGTGAGCGATTACACACGTCTGAAAACATGGCGACTTTAGTGGAGGCAACATCCTCGCAGCAGTTTGAGGACTTGCTATCAAAGGCTGGCAAGTTCTTGACGGTGGTCCACTTCCAGGCAGCATGGGCCCCTCAGTGCAGTCAGATGAACGatgtgatgggagagctggcaaAGGAGAACAAACACACCATGTTTGTCAAGCTGGAGGCAGAAGCAGTGCCAGAGGTATCAGAGAAATATGAGATTACCTCAGTCCCTACCTTCCTCTTCTTTAAGGGTGGCCAGAAGATTGACAGGCTGGACGGAGCTCATGCCCCAGAGCTGACCAATAAGGTCCAGAGGCTGTCGGTCAGCTCGGGGGGGCTGGGCGGGCCAGGGGCGGAGCCCCCTAAAGAGGACCTTAATGAGCGTCTGAAGAGACTGATCAACGCAGCACCCTGCATGCTCTTCATGAAGGGCTCCCCCCAGGAACCCCGCTGcgGTTTCAGCCGTCAGATAGTGGCGCTTTTCAAGGACCATGCTATCCAGTTCAGCAGTTTTGACATCCTGTCAGACGAGGAAGTGAGAGGGGGGCTGAAGACCTTCTCCAACTGGCCCACCTACCCTCAGGTTTACGTTAACGGAGAACTCGTAGGGGGACTGGACATTGTCAAGGAACTAGCTGAATCTGGAGAGCTGGAGAATACCTGTCCCAAGGCCGTCACACTGGAgcacagGTTGAAGTCGACCATCAACAGGAGTCCAGTCATGCTGTTCATGAAGGGCAATaaagagCAAGCCAAATGTGGATTCAGTCTTCAGatactggagataatgaacagcTCAGGGGTGGAATATAGCACCTTTGATATCCTGGAAGATGAGGAGGTTAGACAGGGTCTAAAGACGTACTCAAACTGGCCAACGTACCCTCAGCTATACGTCAATGGGGAACTCATTGGCGGGCTGGACATTGTGAAGGAGCTTAAAGACAGTGGAGACCTTTCTTCTGTCCTGAGGGGTGAATGCTAGGTTCCTGTAGTACTGTGATGGGAATGAGCTATGGACTACTGCactcttccttcccctctctaccctcttcttcctctctctaccctcttcattcccctctctaccttcctcttcctctctctgccctgttcttcctctctctaacctcttcgccctctctctaacctcttcttcctctctctaccctcttcttcctctctctatcctcttcttcctctct
>TU112485
ATGGTTAATAtcttccctgtgtttcctgtttgcAGGGTGGAATATAGCACCTTTGATATCCTGGAAGATGAGGAGGTTAGACAGGGTCTAAAGACGTACTCAAACTGGCCAACGTACCCTCAGCTATACGTCAATGGGGAACTCATTGGCGGGCTGGACATTGTGAAGGAGCTTAAAGACAGTGGAGACCTTTCTTCTGTCCTGAGGGGTGAATGCTAGGTTCCTGTAGTACTGTGATGGGAATGAGCTATGGACTACTGCactcttccttcccctctctaccctcttcattcccctctctaccttcctcttcctctctctgccctgttcttcctctctctaacctcttcgccctctctctaacctcttcttcctctctctaccctcttcttcctctctctatcctcttcttcctctctctaccattttcttcccctctaccctcttcttcctctctctaacctcttcgccctctctctaccctcctcttcccatctctaccctcctcttcccctctctaccctcttctCTTCTGTACCCTCTTCCCTTTTCTCTACCCTTCTCTGAAATACATGGTATATTATCCATCCATTGATTTTTCTGAACTTAGCACAGGTGTCCAAATTAACCTGATTGATCAAACTGCATTCTGCCACCAGCTGCAAATATAATAAAGTCATCCATGATGC
>TU112486
ATGGTTAATAtcttccctgtgtttcctgtttgcAGGGTGGAATATAGCACCTTTGATATCCTGGAAGATGAGGAGGTTAGACAGGGTCTAAAGACGTACTCAAACTGGCCAACGTACCCTCAGCTATACGTCAATGGGGAACTCATTGGCGGGCTGGACATTGTGAAGGAGCTTAAAGACAGTGGAGACCTTTCTTCTGTCCTGAGGGGTGAATGCTAGGTTCCTGTAGTACTGTGATGGGAATGAGCTATGGACTACTGCactcttccttcccctctctaccctcttcttcctctctctaccctcttcattcccctctctaccttcctcttcctctctctgccctgttcttcctctctctaacctcttcgccctctctctaacctcttcgccctctctctaccctcctcttcccatctctaccctcctcttcccctctctatcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctatcctcctcttcccctctctaccctcttctCTTCTGTACCCTCTTCCCTTTTCTCTACCCTTCTCTGAAATACATGGTATATTATCCATCCATTGATTTTTCTGAACTTAGCACAGGTGTCCAAATTAACCTGATTGATCAAACTGCATTCTGCCACCAGCTGCAAATATAATAAAGTCATCCATGATGC
>TU112489
ATGGTTAATAtcttccctgtgtttcctgtttgcAGGGTGGAATATAGCACCTTTGATATCCTGGAAGATGAGGAGGTTAGACAGGGTCTAAAGACGTACTCAAACTGGCCAACGTACCCTCAGCTATACGTCAATGGGGAACTCATTGGCGGGCTGGACATTGTGAAGGAGCTTAAAGACAGTGGAGACCTTTCTTCTGTCCTGAGGGGTGAATGCTAGGTTCCTGTAGTACTGTGATGGGAATGAGCTATGGACTACTGCactcttccttcccctctctaccctcttcttcctctctctaccctcttcattcccctctctaccttcctcttcctctctctgccctgttcttcctctctctaacctcttcgccctctctctaacctcttcttcctctctctaccctcttcttcctctctctatcctcttcttcctctctctaccattttcttcccctctaccctcttcttcctctctctaacctcttcgccctctctctaccctcctcttcccatctctaccctcctcttcccctctctatcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctatcctcctcttcccctctctaccctcttctCTTCTGTACCCTCTTCCCTTTTCTCTACCCTTCTCTGAAATACATGGTATATTATCCATCCATTGATTTTTCTGAACTTAGCACAGGTGTCCAAATTAACCTGATTGATCAAACTGCATTCTGCCACCAGCTGCAAATATAATAAAGTCATCCATGATGC
>TU112483
ATGGTTAATAtcttccctgtgtttcctgtttgcAGGGTGGAATATAGCACCTTTGATATCCTGGAAGATGAGGAGGTTAGACAGGGTCTAAAGACGTACTCAAACTGGCCAACGTACCCTCAGCTATACGTCAATGGGGAACTCATTGGCGGGCTGGACATTGTGAAGGAGCTTAAAGACAGTGGAGACCTTTCTTCTGTCCTGAGGGGTGAATGCTAGGTTCCTGTAGTACTGTGATGGGAATGAGCTATGGACTACTGCactcttccttcccctctctaccctcttcttcctctctctaccctcttcattcccctctctaccttcctcttcctctctctgccctgttcttcctctctctaacctcttcgccctctctctaacctcttcttcctctctctaccctcttcttcctctctctatcctcttcttcctctctctaccattttcttcccctctaccctcttcttcctctctctaacctcttcgccctctctctaccctcctcttcccatctctaccctcctcttcccctctctatcctcttcccctctctaccctcctcttcgccctctctctaccctcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctatcctcttcccctctccatcttcctcccctctctatcctcttcccctctctaccctcctcttcgccctctctctaccctcctcttcccctctctaccctcctcctcccctctctaccctcctcttcccctctctaccctcctcttcccctctctaccatcctcttcccctctctaccatcctcttcccctctctaccctcctcttcgccctctctctaccctcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctac
>TU112492
ATGGTTAATAtcttccctgtgtttcctgtttgcAGGGTGGAATATAGCACCTTTGATATCCTGGAAGATGAGGAGGTTAGACAGGGTCTAAAGACGTACTCAAACTGGCCAACGTACCCTCAGCTATACGTCAATGGGGAACTCATTGGCGGGCTGGACATTGTGAAGGAGCTTAAAGACAGTGGAGACCTTTCTTCTGTCCTGAGGGGTGAATGCTAGGTTCCTGTAGTACTGTGATGGGAATGAGCTATGGACTACTGCactcttccttcccctctctaccctcttcttcctctctctaccctcttcttcctctctctaacctcttcgccctctctctaccctcctcttcccatctctaccctcctcttcccctctatcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctaccatcctcttcccctctctaccatcctcttcccctctctaccatcctcttcccctctctaccatcctcttcccctctctaccctcctcttcgccctctctctaccctcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctac

Function

symbol description
glrx3 Predicted to enable iron-sulfur cluster binding activity; metal ion binding activity; and protein-disulfide reductase activity. Acts upstream of or within hemoglobin metabolic process and iron ion homeostasis. Predicted to be located in cytoplasm. Predicted to be active in cytosol and nucleus. Is expressed in brain; eye; heart; and intermediate cell mass of mesoderm. Orthologous to human GLRX3 (glutaredoxin 3).

NR:

description
glutaredoxin-3-like

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0009055 electron transfer activity molecular_function
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988702.1 False 1322 mRNA 0.52 11 91793618 91832379
TU112485 False 689 lncRNA 0.47 5 91791792 91797445
TU112486 False 688 lncRNA 0.48 6 91791792 91797445
TU112489 False 826 lncRNA 0.49 4 91791792 91797445
TU112483 False 998 lncRNA 0.44 4 91792579 91797445
TU112492 True 700 TUCP 0.54 5 91792579 91797445

Neighbor

gene id symbol gene type direction distance location
LOC118966091 tcerg1l coding downstream 263171 91317168 ~ 91530447 (-)
LOC110531579 LOC106577354 coding downstream 674239 91090411 ~ 91119379 (-)
LOC110516041 jakmip3 coding downstream 720902 90982735 ~ 91072716 (-)
LOC118936689 dpysl4 coding downstream 823027 90919995 ~ 90970591 (-)
LOC110513773 LOC107083051 coding downstream 979687 90803324 ~ 90813931 (-)
LOC118966740 NA coding upstream 711510 92543889 ~ 92544887 (-)
LOC118966741 NA coding upstream 784677 92617056 ~ 92622002 (-)
LOC118966742 NA coding upstream 1015085 92847464 ~ 92848944 (-)
LOC118966095 NA coding upstream 1016661 92849040 ~ 92850460 (-)
LOC110528622 LOC106592985 coding upstream 1036223 92868602 ~ 93019314 (-)
G101056 NA non-coding downstream 10341 91782582 ~ 91783277 (-)
G101055 NA non-coding downstream 12742 91780584 ~ 91780876 (-)
G101053 NA non-coding downstream 30588 91762727 ~ 91763030 (-)
G101052 NA non-coding downstream 31899 91761459 ~ 91761719 (-)
G101050 NA non-coding downstream 34394 91758801 ~ 91759224 (-)
G101070 NA non-coding upstream 6541 91838920 ~ 91839456 (-)
G101072 NA non-coding upstream 7623 91840002 ~ 91840580 (-)
G101078 NA non-coding upstream 15799 91848178 ~ 91848691 (-)
G101081 NA non-coding upstream 20115 91852494 ~ 91852965 (-)
G101082 NA non-coding upstream 21340 91853719 ~ 91854018 (-)
G100582 NA other downstream 559830 91232740 ~ 91233788 (-)
G100197 NA other downstream 934646 90625080 ~ 90858972 (-)
G99602 NA other downstream 1829413 89963873 ~ 89964205 (-)
G99595 NA other downstream 1835702 89957392 ~ 89957916 (-)
G102060 NA other upstream 759202 92591581 ~ 92595514 (-)
G102083 NA other upstream 804919 92637298 ~ 92638881 (-)
G102119 NA other upstream 906634 92739013 ~ 92739530 (-)
G102158 NA other upstream 1041190 92873569 ~ 92874498 (-)
G101059 NA non-coding upstream 1567 91799012 ~ 91799260 (-)
G101028 NA non-coding upstream 4022 91801467 ~ 91802641 (-)
G101027 NA non-coding upstream 7850 91805295 ~ 91806535 (-)
G101067 NA non-coding upstream 25996 91823441 ~ 91823670 (-)

Expression


Co-expression Network