LOC110501964 (LOC106589166)


Basic Information

Item Value
gene id LOC110501964
gene name LOC106589166
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 93421780 ~ 93475392 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988820.1
ctaacaccatctctctctctctctctaaggaaCCATGGTGAGCAAGGCGGAGGGAGATAAAAGCATGCTCACCAACTCCGAGTCGGATTCAGAGGTGGCGCCCACCCCCTCCCCTTCCGCCTCGCTGGCCCTGGAGGTCAAATACTCCTTCCTGGACACCAGCAGCAGGTCACAGCAGCagGTACGGAAGAGAAACAAGGCCCTCCAGGTGAGATTCAAGGACATCTGCGAGGCGCAGAACGAGCAGAGAGAGGCCGCTCTACAGATGGCCGGGAAGGGGGGCAAGCCAGGCTCCTACAAGGTGGCGTACCGCAAGTACATGACAGTGCCCGCTCGGCGCTCCATCCCCAACGTCACCAAGAGCACAGGGGTCCAGACGTCCCCGGACCTCAGGAGCCGTTACAAGACCTTTCCCATGGAGAGGAAGAAGGGCCACAGCCACACCAAGCATGTGGAGAGAGACAAGGGCCACAGCCACACCAAGCATGTGGAGAGAGACAAGGGCCACAACAATGGGTTTGTCATCGACGTCAAGCACTCCAGAGCTGTGGAGCGTTTAGGGGACAGGGGCGCCtgcggtggtggaggaggaggaggaggagtacagAGAACCAGAGCTGTGGAGCGTTTAGGGGACAGGGGCGCCtgcggtggaggaggaggaggaggaggaggagtacagAGAACCAGAGCCTTGTTGCATACTACGGAGTGCATAGCTACGGTGGAGAAGCACTGTACAGACGACGTCCTCTACTCTGACTGTCTGATGCTCACAGACGGCCCCTCTCCCTCCAACACGCCCGACTCCAACCCACAGGCCACCGATTACCAGATCTGCAGTGTCGACTCCAACCCACAGGCCACCGACTACCAGATCTGCAGCGTCAGCTCCAACCCCCTGGAAGGACTAGAACACAGGGAACTGGACTCCTCGGACTGTCCGGCCGGGAAACGGCTGATGCTCCACTCGGAGGAGCCAGGCTCTAGCAGGACTCTGCCGGGGGACATGAGAGGGTCTTcctcagtctccaaggtgaccgGCCCCATCTCCTGGAACTCTCTGACCCAGGTGGAGTGTCTGGAGAGCCCGACAGCACGGAGCAAACTAATGAAGGGACTGGAGCTGAATGGACTACAGTCTCAGACTCTACCGCGGGCCGCTGGCTGCACTACTCAGGCACAGTGTCATGAACCGGCAACGTTCTCATCACAGACGTTCTCGACACAGACGTTCTCGCCACAGACGCTGTCGGCCCGGACCACGGGGGAGGCGCTGGGATGTAGGAGTAGCGGGGTCGAACCAGCGACCGTAGCGACTACGGGGGGAGTTAACCCCGGGGGGGCCTGTAAGCAGATAGTACCGGTACTGACtcagaaaggggagggaggagaggatgtgaAATCACAGCTTCAGGCCATGGAGAACCTGATCTCCTCCAGCCAGGAGACCATCAAGGTCCTACTGGGAGTTATACAGGAACTGGAGAAGGGAGAGGCCCACAGAGAGGGcctctcctATCGAACCGGACAGGACACGGCCAACTGTGACACGTGTCGGAACAGCGCATGCATAATTTACAGTGTGGAGCTGGACTTCAAACAGCAGGAAGACAAGCTGCATCCCCTGATGAAGAGGCTGTGTCCTTCAGAGGACCCACACTTATCTCTGCCTTACCCCCCTGAGGCCTTCACCTCCACCCCTAAACGCAAGGCCAAGGCCGACTCCAAGAAGCACGCCCGATGGAAACTCTGGTTCCTCTGAGACACAGCAGGAATTaatatcccccccaaaaaaacaaatgTCGTCGTCTTAGGTCAGACAGAGGAGCAACAAGTTGAGGACTCCGTCTGCACTGCGGGACGAGGGACGAGCGTCGGAGTGACGGCACCTATTGGATTTACGGAAGACAGGAAGACCCGAACTCTGATTCAGCTGGATACCTTTGATTTATCACATCTATCCATTTATTCATCTTTTGGGGATTTTGgatcacaacaaaacaaacagaatcCCGCTGAAAGGTTTTTTCATGGCCTGGTAACCTCAATCTATCTAAAACTGGTGAGCCCTTCTAATAATGACAATAGTGGATATTATTGAACTGGGTTTTTTTTGGTTTTGGAAAGAGCGGCAGGATCTGTAAAAAGAAAAACATGAaatatgg

Function

NR:

description
protein FAM196A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988820.1 True 2168 mRNA 0.56 5 93421780 93475392

Neighbor

gene id symbol gene type direction distance location
LOC118966102 NA coding upstream 374548 93046026 ~ 93047232 (+)
LOC110533005 clrn3 coding upstream 387313 93027579 ~ 93034467 (+)
LOC118964553 NA coding upstream 1058919 92359998 ~ 92362861 (+)
LOC110522569 LOC106613918 coding upstream 1338796 92012752 ~ 92084472 (+)
LOC110531613 LOC106577355 coding upstream 1537400 91877562 ~ 91884380 (+)
LOC110511695 LOC106577385 coding downstream 246996 93722388 ~ 93770095 (+)
LOC110517068 LOC106577343 coding downstream 306087 93781479 ~ 94002963 (+)
LOC110515218 LOC106591983 coding downstream 535287 94010679 ~ 94040287 (+)
LOC118966112 NA coding downstream 548518 94023910 ~ 94027476 (+)
LOC110515885 hem4 coding downstream 578889 94054281 ~ 94067997 (+)
G101859 NA non-coding upstream 15724 93405592 ~ 93406056 (+)
G101854 NA non-coding upstream 22374 93398788 ~ 93399406 (+)
G101834 NA non-coding upstream 78080 93343312 ~ 93343700 (+)
G101822 NA non-coding upstream 82210 93302115 ~ 93339570 (+)
G101826 NA non-coding upstream 99931 93320934 ~ 93321849 (+)
G101899 NA non-coding downstream 21655 93497047 ~ 93497591 (+)
G101901 NA non-coding downstream 24148 93499540 ~ 93500718 (+)
G101924 NA non-coding downstream 77151 93552543 ~ 93553172 (+)
G101930 NA non-coding downstream 90461 93565853 ~ 93566932 (+)
G101933 NA non-coding downstream 114568 93589960 ~ 93590221 (+)
G101737 NA other upstream 405018 93015922 ~ 93016762 (+)
G101642 LOC106594265 other upstream 549080 92867676 ~ 92872700 (+)
G101557 NA other upstream 889961 92527019 ~ 92531819 (+)
LOC118966092 NA other upstream 1585138 91833232 ~ 91837213 (+)
G100377 NA other upstream 2310918 91109249 ~ 91110862 (+)
G102505 NA other downstream 357732 93833124 ~ 93835192 (+)
G102710 NA other downstream 735657 94211049 ~ 94212908 (+)
G102740 NA other downstream 770105 94245497 ~ 94247931 (+)
G102769 NA other downstream 839301 94314693 ~ 94393315 (+)

Expression


Co-expression Network