LOC110511695 (LOC106577385)


Basic Information

Item Value
gene id LOC110511695
gene name LOC106577385
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 93722388 ~ 93770095 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988827.1
TTGCTTCCCGATATCCAACAGCTCCTTAATAATCTGAATCCACTGCCTGCCGCCGTGTAGCCCCTGATTCCTGGCCAGATATTTCTGCCGTGCCTGGTAACCCGGGCCAGCCAGAGGGTCCTTCTCGTTAATAGCTGATGTAAAGAAGGAGCTTTATCCAAAACCAGGGGTCTGAAACCGGAGACGGGGAGCTGTTGGTTACCTTAGCCCCAGAGAGATGAATCTTCGTGGGCCATCTGCCCACCCGGGGGCCCGTAGGGGCCAGGATCCGGGCTGGAGAAGATCATGGGAACCGTCCCATTGGGACGGACTCATGTCTGAAGTGGAGGTGGTGCCACGACATACCGGTCTTACGGGATGTAACCCTCCTCGGCAACAGAGCGCCAGAGATGGAGGGAGCCACAGCCAGAATCTAGACAGGTGTTTGCAGGAGTTGGAGAGAGTGCAGTGTCAGACCTATTTTAAAGGAGGAAGCCCAGTTAGCCTTCCTGGCCAAGTGCAGTGTCAGACCTATTTTAAAGGAGGAAGCCCAGTTAGCAGTCCTGGCCAAGTGTCCAAGGTAGAGCTTGTGCCTCCATCTCCCCCTCAACTTACCCCTGCTCGTACCCCTCGGCCGCACAGCGCCATCGAGGGAAGACGTCAGATGAACGAGTGGCTGTATGAGTTGGAGAAGATGCAGAGTGGGGACTATTTTGACGGAAGCCCCACTGACAGCCCAGAGGTTGAGCCCCATCCGAAGGTTCATTTGGGTCGTACCCCTCGCCCGCAGAGCGCCATCGAGGGAGGTAGCCAGAATCTAGACAGGTGGTTACAGGAGCTGGAGAGGATGGAGAACGGGAGATATTTCGGAAACCCTGACCGAGTGCAGAGAGATCAAGTGCAGGCCCCTTTCTACGACGGGACAGCGTCGATGCCAACCCTTCACAAGGAACCCGTTGGCTCTGGCCTGCGTCACCACTACCAGGGCCTCCCCTCGTCCCCATCTCTCTGCAGCCGGGACAGGGACCTCTCcccctgtgggactcccagccCGTGTGACAGTTCCCTGGGCAGCCAGGAGTCCCTCAAGGCAGGATTGTCCTCTGCCCAGGACTACAACGGTAGCTGGGAAAGGGCTATAATCAAGCAGGCTCCAGGGAAGGAGGAGGCTAAACTCAGCTCTCTGACTCCGGTGAGAGTGGGCTGGCTGCCCATCCAGAGAAGGGCCCTGTTGAGGGATGCTCCAGGCCCTGGACCCAGACATCCACACCTTCAGGTCAATGTAGCCAGACAGgtgAGACTTAAACCGGCCATTACCCCTACCTTCCGGAAGAATCCTGTCAGGGGAAACGTGATCAAACCTGTAGTAGagggagaggtggagaaagtgGAGTGGAGTAAACCGATCATTAACACTGTGGGGCTCAGAACGAGGTGGCTTCCTGACCAGGCTCCTTCCCCCAGTACTcaacaccagGTCTCAGGCAAGGAAAGCTCAGTCCCAAGGGAGAGGGACAACAGGTCTTTAGGTTGGCAGGATCAGAGGAGAAGTTGGGCTAGCAGGACAACATCCCACCTCAGTGGTAGTGGGACTCCTACCCAGTCTAACAACTCCCTACCCGGGGCTAACACTAACTCAGAGCCTGCCAGGAAGAGCCCTCTACACAGTACAACCAGCAACAACCAACAGCCTTCACACACTGAGGTTCCACCCTATGGTACCAGCTCACAGTCTCCTGGAATCCAACCTGGGGACGACTCAGACTCAGAACCCTGCTGGAGATCTTCTCTACACAGGACCAACAGCTTCCAAACGTCTTCTCCCTCGACGATCAGGCCAACAGTCCAAAATAATCCTTCACACACTGAGATAACCCCCTCTGGAACCAAATCTGCACCGTACAGGAGCAACAACCCTCTATGTAGGACAAACAGCGTCCAACAGAAACCCTCACACGCTGAGTTAACTCCTTATAGAACCAGCTCAGAGCCTTACAGAGCAACCTCTCTACAAAAACGAACAAGTTGTCTTCCACAAACTTCTCCTGCTGGGGTAGTATCACCCCCGGCCCCTAGGACCACTACAGGTGCTACCATCGTCCTGAAGACAACTACACCAGCCTTCTCCTCCATTACCATCGCCACCAAGAAGATCTCCAGGACGACAAGCCTCCCTGGGTCTAGACCTCTGAGCCCTGGATCTAGAGCCCCCAGACCCCAGAGCTACCACTCTGACGAGGCCAGGGTCCCAGGCTATAAAGCCCCTAGGCCCCAGAGCTACCACTGCGACGAGGCCATAGTCCCAGGCTATAAAACCCCCAGGCCCCAGAGCTACCACTGCGACGAGGCCAGAGTCCCAGGCTATAAAACCCCTAGGCCCCAGAGCTACCACTGCGACGAGGCCAGGGTCCCAGGCTATAAAACCCCCAGGCCCCAGAGCTACCACACAAACCAGTCCAGACTCTCCACCACATGCACCTCTGTCACCCAGCAGGACCAGgtccatcaccaccaccccaccGGCAACGACCCCAGCTCCACCCCTGTCACCCTCAGGAGAAAGTCCACCGCCACCATAGTCAAAGTGACCGAGCACAGAAGGATGACCTCTGAACCTGTCAACCGACTGAACGGAAGGCAGAGCCCTGTTTCATCTGTGTCAGGTGACCAACCAAATGATCAGGGCACGGCGGTTCACAGGAGAAAAGCCACCGTCATAAAAGTGACCGAGCACAGAGAGAGCTACAGCCCAGGTCAGGATGCCAGTGGTGTGATCAGAAGCAGCAGTAGACCGTCAGAGTAcagacacagttacacagaggGAGTGTACACACACAAATCCCCGTGGCAACAATCCCCGTGGCAACAAGGAGCCATGAATTCAAACATGAACTCTGTGGAATCACTCCAGAGTACCCCTCCCTCCCAGTACCTTCTAGAATCATCTATGGGCAGGATAGACAGGCCCAACTCTGCTCTGTTCCTGACTCCAAACAAGTCCACCTCAACCACTACAGTTGCTCTGAGGGACCCAGAAGGAAGCAGAGGTGGAGGGAAGCCAATACAGAAGTCTACCCTGATGCTGTTCATAaacccctcttctccctcttccagagagacatccatAGAGAAGGttggtgtagagagaggaggcgaAGAGAGACGGGCTCGGGACAGAGCCAGAAGACCAGCGAGCTGCTATGCTAATGTGTTTGGCCACACTGACCCGACAGAGCCATGCCCAGTCtcagagactgttactgttacACAAGCTGGACCTGGGAACTGGAGCCCAGAGTCTGTTACACAAGCTGGACCCGGGAACTGGAGCCCAGAGACTGTTACACAAGCTGGACCCGGGAACTGGAGCCCAGAGACTGTTACACAAGCTGGACCCAGGAACTGGAGCCCAGAGACTGTTACACAAGCTGGACCCGGGAACTGGAGCCCAGAGACTGTTACACAAGCTGGACCCGGGAACTGGAGCCCAGAGACTGTTACACAAGCTGGACCCGGGAACTGGAGCCCAGAGACTGTTACACAAGCTGGACCCGGGAACTGGAGCCCAGAGACTGTTACACAAGCTGGACCCGGGAACTGGAGCCCAGAGACTGTTACACAAGCTGGACCCAGGAACTGGAGCCCAGTGACTGTTACACAAGCTGGACCCGGGATCTGGAGCCCAGAGACTGTTACACAAGCTGGACCCGGGAACTGGAGCccagagactgttactgttacACAAACTGGACCCAGGAACTGGAGCCCAAAGACTGTTACACAAGCTGGACCCGGGAACTGGAGCCCAGAGACTGTTACACAAGCTGGACCCAGGAACTGGAGCCCAGAGACTGTTACACAAGCTGGACCCAGGAACTGGAGCACAGAGACTGTTACACAAGCTGGACCCGGGAACTGGAGCCCAGAGACTGTTACACAAGCTGGACCCGGGAACTGGAGCCCAGAGACTGTTACACAAGCTGGACCCGGGAACTGGAGCCCAGAGACTGTTACACAAGCTGGACCCGGGCATTGGAGCATGGGACATCCTAACCAGACCCAGAATTCTAATATTGACCCAGTGAGGGACCGGGTCAAGGACACTGCTACCAGCAACAGTAGATTAAACACTGGATCTTCTAGCTCTTCCATCAGTGCTGGACCAGCaggcagggacagggagatgtGTCCCCCAGAGAcagagtcctccagaccagagggaagagggactgagagagaaggagatgtaACACATCATTCACACCAGGCAGATGCCAGGAGCAGCCAACCACAACCTCCAGCTATCACTCTCATCAAGCACCAAGAGCCCCAGTCACATCAGCAGTCTCCCGAGGCTGTCCTGGCCCTCAACGCTGCCGCCGTCATAGCTCATATCAAACTCCAGAGACAACTGAGCCTGAGGAAGGCAACACCACATGACCTTTCTACAAGGTCACCCACCACACCAGAGGAGGGAAAAACACTGGTGAAGGATGCTGGTGGTTGTGTGCGACCCAGGACTGATGACAACAGACTAGACCCTGGTGAGACCACCAGAACCACACATCACACAACCCAGATTGATGTTGGGTTTATTCCCCTGAATTCTGACTCTGACCCGGAAACAAGCAAAGCCAACATTCCATCACCCAGGGAGGCTCTGGAGCGATCCAGACCACACTTCATCAGTCGCTCTCAGGGcagactgagagagatggagaggcgggcggaagagaggagggaggagaggcgcTCTGACCACCAGCCAGAGGAGACGATGCTGATGCACCATGGAGGACACAGCACCAGAACCAGTCCTCTCAGTGataACCTTTTCCGACCCAGAGATAGAGCCATTACAGGGAAGGAGATGCACCTCAGAACCAGGCAGAACTATAAAAATCTGCCGGAGGTGAGGAGGAaacaggaggaagagaagaggagggaggactaCCTGACTAACAGGCTGAGAGCAGATCTCTTCAAAAAGAAACTGTTAGAACAGATCCTTCAAAGGGCTAGACACTGAGTGAAGCCAAGGATGAATGGTCCGAACGTACGGGATCTCCCCCCCTCCTTCCAGCATACTGCCCTGCTTTGAGAGACCCAACAACCATCAAGACGGACTGACGATTATCCCAACGACAGCTTTAATACACATTATAATTGAGCAACATCATTGAAAAAAGATAAACAAATTTTAAACAATTTGTAGTGAAAATGTGTGTCATTAGAAATGAAACAAAACGATGTATGTTATAATGTTCCACCATTTTAATGATAACGTCTTTCCTCATCATAATACTGCTGTTTATGATCCAAAAACCCTGTTTGGTTCACAGAAGCACACTGTGTTTTACTGCTCCTGAGCCAATCAAATCGAATCCTACTGAGAGCTCCAATGAATGTCCGTCTGCTTGACCAGAATCTTTCTGAGGGTGTGTAGAATACCGGTTTAGTTGTGGGATTACAATGTAACGAATGTTGTTGTTCTATGTTATCTATGTTATCTATGTTATCTATGCATATGGACTGTGTACTGTATTGAAGCCTTCCATAAAAAAACTGTATCGTTGGCTCCACTAAATGTTGTTCTTCTATGTTATCTATGTTGTCTATGTTATCTATGCATCCTGCTTGTTTATATTATTCGTATTGATTTAGCTAGGcaggtaaatcaaatcaaatgtatttatatagcccttcgtacatcagctgatatctcaaagtgcagtacagaaactcagcctaaaacccaaaaccagcaagcaa
>TU113768
GCCCTCAACGCTGCCGCCGTCATAGCTCATATCAAACTCCAGAGACAACTGAGCCTGAGGAAGGCAACACCACATGACCTTTCTACAAGGTCACCCACCACACCAGAGGAGGGAAAAACACTGGTGAAGGATGCTGGTGGTTGTGTGCGACCCAGGACTGATGACAACAGACTAGACCCTGGTGAGACCACCAGAACCACACATCACACAACCCAGATTGATGTTGGGTTTATTCCCCTGAATTCTGACTCTGACCCGGAAACAAGCAAAGCCAACATTCCATCACCCAGGGAGGCTCTGGAGCGATCCAGACCACACTTCATCAGTCGCTCTCAGGGcagactgagagagatggagaggcgggcggaagagaggagggaggagaggcgcTCTGACCACCAGCCAGAGGAGACGATGCTGATGCACCATGGAGGACACAGCACCAGAACCAGTCCTCTCAGTGataACCTTTTCCGACCCAGAGATAGAGCCATTACAGGGAAGGAGATGCACCTCAGAACCAGGCAGAACTATAAAAATCTGCCGGAGGTGAGGAGGAaacaggaggaagagaagaggagggaggactaCCTGACTAACAGGCTGAGAGCAGATCTCTTCAAAAAGAAACTGTTAGAACAGATCCTTCAAAGGGCTAGACACTGAGTGAAGCCAAGGATGAATGGTCCGAACGTACGGGATCTCCCCCCCTCCTTCCAGCATACTGCCCTGCTTTGAGAGACCCAACAACCATCAAGACGGACTGACGATTATCCCAACGACAGCTTTAATACACATTATA
>TU113771
GCCCTCAACGCTGCCGCCGTCATAGCTCATATCAAACTCCAGAGACAACTGAGCCTGAGGAAGGCAACACCACATGACCTTTCTACAAGGTCACCCACCACACCAGAGGAGGGAAAAACACTGGTGAAGGATGCTGGTGGTTGTGTGCGACCCAGGACTGATGACAACAGACTAGACCCTGGTGAGACCACCAGAACCACACATCACACAACCCAGATTGATGTTGGGTTTATTCCCCTGAATTCTGACTCTGACCCGGAAACAAGCAAAGCCAACATTCCATCACCCAGGGTAAGTTGAAGTTACCAGCTCCTAGCCATCTCATGGCCAGCAGGGTAAGTTGAAGTTCTGGAGTAAGTTTTGGATGCATGAAACTCATGAAACTTGATGATGAAAGACGTGTCTTGGGCTCCAGGCTAAATGCTTTCACAACAGGCCTGTTTATCTCTCAGCATAGTCAAGTCAGAGATGTTGCATGCTGGGACAGTATCTTGTTATATTTTTCCTCTCCGGCGAAAAAACACACACTACATTTCTGTAAGGGAGAAATCAATAGTAACACAACATGCGCCATCGcctagccagcctccctccacatgaagaataccagctcctagccagcctccctccTCATGAAGAGTACCAGCtcctagccagcctccctccTCATGAAGAGTACCAGCtcctagccagcctccctccacatgaagaataccagctcctagccagctcctagccagcctccctccacatgaagaataccagctcctagccagcctccctccacatgaagaataccagctcctagccagcctccctccacat
>TU113770
cctccctccacatgaagaataccagctcctagccagcctccctccacatgaagaataccagctcctagccatctcctagccagcctccctccacatgaagaataccagctcctagccagtctccctccacatgaagaataccagctcctagccagcctccctccacataaagaataccagctcctagccagcctccctccacataaagaataccagctcctagccagcctccctccacatgaagaataccagctcctagccatctcctagccagcctccctccacattaagaataccagctcctagccagcctccctccacatgaagaataccagctcctagccagcctccctccacatgaagaatatcagctcctagccagcctccctccacatgaagAATACCAGCTCCTAGCCATCTCCTAGCCAGCtcctagccagcctccctccacatgaagAATACCAGCTCCTAGCCATCTCCTAGCCAGCTCCTAGCCAGCACCTATCCATCTCCTAGCCAGCTCCTAGCCATCTCCTAGCCAGCtcctagccagcctccctccacatgaagAATACCTTCTCCTAGCCATCTCCTAGCCATCTCCTAGCCATCTCCTAGCCATCTCATAGCCAGCtcctagccagcctccctccacatgaagAATACCAGCTCCTAGCCAGCTCCTAGCCATCTCCTAGCCATCTCCTAGCCATCTCATAGCCAGCtcctagccagcctccctccacatgaagaataccagctcctagccagcctccctccacatgaagagtaccagctcctagccagcctccctccacatgaagAGTACCAGTtcctagccagcctccctccacatgaagagtaccagctcctagccagctcctagccagcctccctccTCATGAAGAATACCAGCTCCTAGCCAGCTCCTAGCCAGCTCCTAGCTAGCTCCTAGCCAGCTCCTAGCCAGCTTCCCTCCACATGAATAGTACCAGCTCCTAGCCAGCTCCTAGCTAGCTCCTAGCCAGCTCCTAGCTAGCTCCTAGCCAGCtcctagccagcctccctccacatgaagTGTGCCAGCATCAGGAGTTCCAGGCGTACCTCAGGGCAGTGTCCTCGGCCCCCTTGCTGAAGCTCGCTCTCACAGGGCAGATAGATGTTGTAATCACGTTAGTTGAATTCACTGACAGCAGGTCAGTttagataagagtgtctgctaaatgactaaaacatCTCTGCTTCTGGCCCACATACAGGAGGCTCTGGAGCGATCCAGACCACACTTCATCAGTCGCTCTCAGGGcagactgagagagatggagaggcgggcggaagagaggagggaggagaggcgcTCTGACCACCAGCCAGAGGAGACGATGCTGATGCACCATGGAGGACACAGCACCAGAACCAGTCCTCTCAGTGGTACGGTACCactgactgtttctctctctctgtcatagaGGACACAGCACCAGAACCAGTCTGAGTGataACCTTTTCCGACCCAGAGATAGAGCCATTACAGGGAAGGAGATGCACCTCAGAACCAGGCAGAACTATAAAAATCTGCCGGAGGTGAGGAGGAaacaggaggaagagaagaggagggaggactaCCTGACTAACAGGCTGAGAGCAGATCTCTTCAAAAAGAAACTGTTAGAACAGATCCTTCAAAGGGCTAGACACTGAGTGAAGCCAAGGATGAATGGTCCGAACGTACGGGATCTCCCCCCCTCCTTCCAGCATACTGCCCTGCTTTGAGAGACCCAACAACCATCAAGACGGACTGACGATTATCCCAACGACAGCTTTAATACACATTATA
>TU113769
tgtgtgtgtgtgtttccagataACCTTTTCCGACCCAGAGATAGAGCCATTACAGGGAAGGAGATGCACCTCAGAACCAGGCAGAACTATAAAAATCTGCCGGAGGTGAGGAGGAaacaggaggaagagaagaggagggaggactaCCTGACTAACAGGCTGAGAGCAGATCTCTTCAAAAAGAAACTGTTAGAACAGATCCTTCAAAGGGCTAGACACTGAGTGAAGCCAAGGATGAATGGTCCGAACGTACGGGATCTCCCCCCCTCCTTCCAGCATACTGCCCTGCTTTGAGAGACCCAACAACCATCAAGACGGACTGACGATTATCCCAACGACAGCTTTAATACACATTATA

Function

NR:

description
centrosomal protein C10orf90-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988827.1 False 5751 mRNA 0.53 10 93722388 93770095
TU113768 False 802 TUCP 0.52 6 93746050 93769488
TU113771 False 825 lncRNA 0.51 2 93746050 93747465
TU113770 False 1840 lncRNA 0.54 4 93748591 93769488
TU113769 True 358 lncRNA 0.48 3 93763243 93769488

Neighbor

gene id symbol gene type direction distance location
LOC110501964 LOC106589166 coding upstream 246996 93421780 ~ 93475392 (+)
LOC118966102 NA coding upstream 675156 93046026 ~ 93047232 (+)
LOC110533005 clrn3 coding upstream 687921 93027579 ~ 93034467 (+)
LOC118964553 NA coding upstream 1359527 92359998 ~ 92362861 (+)
LOC110522569 LOC106613918 coding upstream 1639404 92012752 ~ 92084472 (+)
LOC110517068 LOC106577343 coding downstream 11384 93781479 ~ 94002963 (+)
LOC110515218 LOC106591983 coding downstream 240584 94010679 ~ 94040287 (+)
LOC118966112 NA coding downstream 253815 94023910 ~ 94027476 (+)
LOC110515885 hem4 coding downstream 284186 94054281 ~ 94067997 (+)
mmp21 mmp21 coding downstream 302975 94073070 ~ 94089003 (+)
G101974 NA non-coding upstream 33981 93686718 ~ 93688407 (+)
G101961 NA non-coding upstream 57598 93664102 ~ 93664790 (+)
G101959 NA non-coding upstream 62950 93658852 ~ 93659438 (+)
G101954 LOC106613940 non-coding upstream 72143 93649195 ~ 93650245 (+)
G101947 NA non-coding upstream 93988 93627848 ~ 93628400 (+)
G102490 NA non-coding downstream 5281 93775376 ~ 93775906 (+)
G102492 NA non-coding downstream 7658 93777753 ~ 93780721 (+)
G102509 NA non-coding downstream 80717 93850812 ~ 93854543 (+)
G102514 NA non-coding downstream 105858 93875953 ~ 93876452 (+)
G102528 NA non-coding downstream 163410 93933505 ~ 93933996 (+)
G101737 NA other upstream 705626 93015922 ~ 93016762 (+)
G101642 LOC106594265 other upstream 849688 92867676 ~ 92872700 (+)
G101557 NA other upstream 1190569 92527019 ~ 92531819 (+)
LOC118966092 NA other upstream 1885746 91833232 ~ 91837213 (+)
G100377 NA other upstream 2611526 91109249 ~ 91110862 (+)
G102505 NA other downstream 63029 93833124 ~ 93835192 (+)
G102710 NA other downstream 440954 94211049 ~ 94212908 (+)
G102740 NA other downstream 475402 94245497 ~ 94247931 (+)
G102769 NA other downstream 544598 94314693 ~ 94393315 (+)
G102912 NA other downstream 718587 94488682 ~ 94522297 (+)
G101994 NA non-coding upstream 16832 93728732 ~ 93729218 (+)

Expression


Co-expression Network