Item | Value |
---|---|
gene id | LOC110499554 |
gene name | mtr |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048565.1 |
NCBI id | CM023219.2 |
chromosome length | 95772356 |
location | 94642693 ~ 94715672 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
mtr | Predicted to enable cobalamin binding activity; methionine synthase activity; and zinc ion binding activity. Predicted to act upstream of or within methionine biosynthetic process; methylation; and pteridine-containing compound metabolic process. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including anterior neural tube; central nervous system; digestive system; immature eye; and mesoderm. Human ortholog(s) of this gene implicated in several diseases, including IgA glomerulonephritis; autistic disorder; hematologic cancer (multiple); hyperhomocysteinemia; and methylmalonic aciduria and homocystinuria type cblG. Orthologous to human MTR (5-methyltetrahydrofolate-homocysteine methyltransferase). |
description |
---|
PREDICTED: LOW QUALITY PROTEIN: methionine synthase |
id | name | namespace |
---|---|---|
GO:0009086 | methionine biosynthetic process | biological_process |
GO:0042558 | pteridine-containing compound metabolic process | biological_process |
GO:0032259 | methylation | biological_process |
GO:0005622 | intracellular anatomical structure | cellular_component |
GO:0008705 | methionine synthase activity | molecular_function |
GO:0008270 | zinc ion binding | molecular_function |
GO:0008898 | S-adenosylmethionine-homocysteine S-methyltransferase activity | molecular_function |
GO:0031419 | cobalamin binding | molecular_function |
id | description |
---|---|
K00548 | metH, MTR; 5-methyltetrahydrofolate--homocysteine methyltransferase |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036989163.1 | False | 5305 | mRNA | 0.53 | 33 | 94642693 | 94715672 |
XM_036989175.1 | False | 5008 | mRNA | 0.52 | 31 | 94642693 | 94715672 |
XM_036989168.1 | False | 4949 | mRNA | 0.52 | 32 | 94642828 | 94715672 |
XM_036989191.1 | False | 4871 | mRNA | 0.53 | 32 | 94646559 | 94715672 |
XM_036989183.1 | True | 4885 | mRNA | 0.53 | 32 | 94648839 | 94715672 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC118966139 | NA | coding | upstream | 521 | 94641221 ~ 94642172 (+) |
LOC110519363 | LOC105888795 | coding | upstream | 3240 | 94566008 ~ 94639453 (+) |
LOC110514579 | LOC106592849 | coding | upstream | 82776 | 94522396 ~ 94559917 (+) |
LOC110533014 | LOC106575474 | coding | upstream | 296578 | 94341947 ~ 94346115 (+) |
LOC118936691 | LOC106575474 | coding | upstream | 364118 | 94273861 ~ 94278575 (+) |
LOC110511675 | ryr2 | coding | downstream | 1483 | 94717155 ~ 95250071 (+) |
LOC118966140 | NA | coding | downstream | 385323 | 95100995 ~ 95101738 (+) |
LOC118966142 | LOC106577302 | coding | downstream | 759107 | 95474779 ~ 95478784 (+) |
LOC110516878 | LOC106577303 | coding | downstream | 770006 | 95485678 ~ 95619013 (+) |
G103008 | NA | non-coding | upstream | 5365 | 94636540 ~ 94637328 (+) |
G103007 | NA | non-coding | upstream | 8343 | 94632824 ~ 94634350 (+) |
G102991 | NA | non-coding | upstream | 54859 | 94584472 ~ 94587834 (+) |
G102988 | NA | non-coding | upstream | 57109 | 94582591 ~ 94585584 (+) |
G102999 | NA | non-coding | upstream | 64103 | 94577244 ~ 94578590 (+) |
G103070 | NA | non-coding | downstream | 10740 | 94726412 ~ 94726676 (+) |
G103076 | NA | non-coding | downstream | 22368 | 94738040 ~ 94741256 (+) |
G103098 | NA | non-coding | downstream | 69569 | 94785241 ~ 94785682 (+) |
G103107 | NA | non-coding | downstream | 104329 | 94820001 ~ 94840803 (+) |
G103111 | NA | non-coding | downstream | 115147 | 94830819 ~ 94843846 (+) |
G102936 | NA | other | upstream | 86504 | 94555064 ~ 94556189 (+) |
G102912 | NA | other | upstream | 120396 | 94488682 ~ 94522297 (+) |
G102769 | NA | other | upstream | 249378 | 94314693 ~ 94393315 (+) |
G102740 | NA | other | upstream | 394762 | 94245497 ~ 94247931 (+) |
G102710 | NA | other | upstream | 429785 | 94211049 ~ 94212908 (+) |
G103091 | NA | other | downstream | 50502 | 94766174 ~ 94766557 (+) |
G103584 | NA | other | downstream | 763117 | 95478789 ~ 95480329 (+) |
G103605 | NA | other | downstream | 848667 | 95564339 ~ 95565530 (+) |
G103633 | NA | other | downstream | 976315 | 95691987 ~ 95694076 (+) |