Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_019840 |
| gene name | NA |
| gene type | non-coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007132.7 |
| NCBI id | CM002905.2 |
| chromosome length | 45934066 |
| location | 42150360 ~ 42156252 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0050877 | nervous system process | biological_process |
| GO:0019265 | glycine biosynthetic process, by transamination of glyoxylate | biological_process |
| GO:0009581 | detection of external stimulus | biological_process |
| GO:0009582 | detection of abiotic stimulus | biological_process |
| GO:0009583 | detection of light stimulus | biological_process |
| GO:0009314 | response to radiation | biological_process |
| GO:0050953 | sensory perception of light stimulus | biological_process |
| GO:0007600 | sensory perception | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0007602 | phototransduction | biological_process |
| GO:0009416 | response to light stimulus | biological_process |
| GO:0003008 | system process | biological_process |
| GO:0051606 | detection of stimulus | biological_process |
| GO:0018298 | protein-chromophore linkage | biological_process |
| GO:0071482 | cellular response to light stimulus | biological_process |
| GO:0001750 | photoreceptor outer segment | cellular_component |
| GO:0044441 | obsolete ciliary part | cellular_component |
| GO:0097730 | non-motile cilium | cellular_component |
| GO:0097731 | 9+0 non-motile cilium | cellular_component |
| GO:0097733 | photoreceptor cell cilium | cellular_component |
| GO:0004760 | serine-pyruvate transaminase activity | molecular_function |
| GO:0008453 | alanine-glyoxylate transaminase activity | molecular_function |
| GO:0009881 | photoreceptor activity | molecular_function |
| GO:0008020 | G protein-coupled photoreceptor activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00039691 | False | 2581 | lncRNA | 0.32 | 2 | 42150360 | 42153664 |
| TCONS_00039692 | False | 4824 | lncRNA | 0.34 | 3 | 42150360 | 42156182 |
| TCONS_00039693 | False | 5096 | lncRNA | 0.34 | 2 | 42150360 | 42156184 |
| TCONS_00039695 | False | 4749 | lncRNA | 0.34 | 2 | 42150360 | 42156206 |
| TCONS_00039694 | False | 4936 | lncRNA | 0.34 | 2 | 42150360 | 42156206 |
| TCONS_00039697 | False | 5350 | lncRNA | 0.34 | 3 | 42150360 | 42156234 |
| TCONS_00039696 | False | 5153 | lncRNA | 0.34 | 3 | 42150360 | 42156234 |
| TCONS_00039698 | False | 5345 | lncRNA | 0.34 | 4 | 42150360 | 42156248 |
| TCONS_00039699 | True | 5175 | lncRNA | 0.34 | 2 | 42150360 | 42156252 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_019839 | gabra1 | coding | downstream | 49889 | 42050351 ~ 42100471 (-) |
| XLOC_019838 | NA | coding | downstream | 101555 | 42043974 ~ 42048805 (-) |
| XLOC_019837 | gabrg2 | coding | downstream | 142878 | 41903760 ~ 42007482 (-) |
| XLOC_019836 | endou2 | coding | downstream | 276776 | 41863540 ~ 41873584 (-) |
| XLOC_019835 | cct6a | coding | downstream | 310676 | 41819288 ~ 41839684 (-) |
| XLOC_019841 | gabra6b | coding | upstream | 697 | 42156949 ~ 42202792 (-) |
| XLOC_019842 | stk10 | coding | upstream | 629264 | 42785516 ~ 42831033 (-) |
| XLOC_019843 | zmp:0000001268 | coding | upstream | 713849 | 42870101 ~ 42876565 (-) |
| XLOC_019844 | dpysl3 | coding | upstream | 814731 | 42970983 ~ 43022048 (-) |
| XLOC_019845 | jakmip2 | coding | upstream | 873456 | 43029708 ~ 43079161 (-) |
| XLOC_019831 | NA | non-coding | downstream | 557197 | 41590870 ~ 41593163 (-) |
| XLOC_019828 | CABZ01034722.1 | non-coding | downstream | 798695 | 41351545 ~ 41351665 (-) |
| XLOC_019825 | CU570984.1 | non-coding | downstream | 898812 | 41251431 ~ 41251548 (-) |
| XLOC_019814 | NA | non-coding | downstream | 1570553 | 40528787 ~ 40579807 (-) |
| XLOC_019849 | NA | non-coding | upstream | 1090455 | 43246707 ~ 43251824 (-) |
| XLOC_019850 | NA | non-coding | upstream | 1169029 | 43325281 ~ 43325892 (-) |
| XLOC_019853 | AL954767.1 | non-coding | upstream | 1234149 | 43390401 ~ 43393079 (-) |
| XLOC_019864 | NA | non-coding | upstream | 1528610 | 43684862 ~ 43700280 (-) |
| XLOC_019872 | NA | non-coding | upstream | 2000821 | 44157073 ~ 44157770 (-) |
