LOC110514271 (rgs7)


Basic Information

Item Value
gene id LOC110514271
gene name rgs7
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 95689394 ~ 95720002 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989242.1
TCACCTCTGTCTCTTTCAGCTGTTTACCTCTGCAAAAGAACAATGCAAAACAAAGCCCGCCTGGAGCTGGCTGACTACGAAGCTGAGAGCTTAGCCAGACTGCAGAGAGCGTTCGCCAGGAAATGGGAGTTTATATTTATGCAAGCTGAAGCACAAGCAAAAGTTGACAAGAAGAGAGACAAAATTGAGAGGAAGATTCTGGACAGTCAAGAGAGAGCTTTCTGGGACGTACACAGACCAGTGcctggatgtgtgaACACAACAGAAGCCGACATCAAGAAATCCTCGAGGATGAAGCAGCCTCATAAAACAAGAAAGTCTGTGTACGGCCTCCAGAATGACATCCGGAGCCACAGCCCCGCCCACGCCCCCGCTCCAGAGGTCAAAGAGCCCACAGAGGAGGAGATGCGTCACCAGATTCAACACTGGCAAGCCCAACTAGACAGGCATCGGTTAAACATGTCCAAAGTGGCAGAAAGCTTGCTGAGCTACACAGAGCAGTATGTGGAGTATGACCCCTTCTTCACCTCCCCGGAGACCTCCAACCCCTGGATCTCTGATGACATCACCATCTGGGAACTGGAGACCAGTAAGGAGCCGGGCCAGCTGAGAGTGAAGAGGTGGGGCTTTGGGATTAACGAGGTGTTGAAGGATCCTGTTGGGAGAGAACAGTTCCTCAAGTTCCTGGAGTCAGAGTTCAGCTCAGAGAACCTCAGgTTCTGGCTGGCGGTTCAGGAGGTGAAGAAGAGGCCGATTCGGGAGGTCCCTACAAGGGTCCAGGAGATCTGGCAGGAGTTCTTGGCCCCCGGGGCCCCCAGTGCCATTAACGTTGACTCCAAGAGCTACGACAAGACCACACAGAATGTCAAGGACCCCGGACGATACGCCTTCGAGGACGCACAGGAGCACATCTACAAGCTGATGAAGAGTGATTCCTACAGCCGCTTCCTCCGCTCTACTTTCTACCAGGAGCTGCTACAGGCCAAGAAGAAGAAAAGTAAGAACTTATTCTGAGGAACTCCATTTCCAGAGTGGGACAGGTGTGGCTCCGTGACAACGATCACAACAGCAGCGGCTCACCGACGTGACTTCGGCTCCAACACAGTGGCACCAACACAGTGGCACCAACACAGTGGCTCCAACACAGTGGCTCCAACACAGTACCCACCTATAAGCCAATGAGGAAACAGCTGCTATGTGGGCATCTGGTATCGCTGGGTTATAAAGTTAGATCTGATTGAATCCAGGCCTTAGGGATCTATGTTATATGTATCGCTGAAGCATTACAGATCACATTGATAGAACATTTTAAAGGTAACCTCTGATTGAGGGGACATGTGAAGCGTTTACAGTGAAATGAGCTAACGCAGAAACATTGAAGGTACATTTCAATTGGGTTGGGTAACAATGAACTTCACGATACTTAATTGAATAGACTCCTTATTGAATCCTTAGTATCAATCCTCTGTCTATTTGTCTCCTTTTTTTTTAGGTCAAATCATTTAGATGGAATCACCCTGGAACAATGTAATGTTTTAGCcttaggagagagaggagagaggaccagaTCATTTGTACATTAATGTAATGTTTTAGccttgggagagagaggagagaggaccagaTCATTTGTACATTAATGTAATGTTTTAGGGAGAGAG
>XM_036989249.1
TCACCTCTGTCTCTTTCAGCTGTTTACCTCTGCAAAAGAACAATGCAAAACAAAGCCCGCCTGGAGCTGGCTGACTACGAAGCTGAGAGCTTAGCCAGACTGCAGAGAGCGTTCGCCAGGAAATGGGAGTTTATATTTATGCAAGCTGAAGCACAAGCAAAAGTTGACAAGAAGAGAGACAAAATTGAGAGGAAGATTCTGGACAGTCAAGAGAGAGCTTTCTGGGACGTACACAGACCAGTGcctggatgtgtgaACACAACAGAAGCCGACATCAAGAAATCCTCGAGGATGAAGCAGCCTCATAAAACAAGAAAGTCTGTGTACGGCCTCCAGAATGACATCCGGAGCCACAGCCCCGCCCACGCCCCCGCTCCAGAGGTCAAAGAGCCCACAGAGGAGGAGATGCGTCACCAGATTCAACACTGGCAAGCCCAACTAGACAGGCATCGGTTAAACATGTCCAAAGTGGCAGAAAGCTTGCTGAGCTACACAGAGCAGTATGTGGAGTATGACCCCTTCTTCACCTCCCCGGAGACCTCCAACCCCTGGATCTCTGATGACATCACCATCTGGGAACTGGAGACCAGTAAGGAGCCGGGCCAGCTGAGAGTGAAGAGGTGGGGCTTTGGGATTAACGAGGTGTTGAAGGATCCTGTTGGGAGAGAACAGTTCCTCAAGTTCCTGGAGTCAGAGTTCAGCTCAGAGAACCTCAGgTTCTGGCTGGCGGTTCAGGAGGTGAAGAAGAGGCCGATTCGGGAGGTCCCTACAAGGGTCCAGGAGATCTGGCAGGAGTTCTTGGCCCCCGGGGCCCCCAGTGCCATTAACGTTGACTCCAAGAGCTACGACAAGACCACACAGAATGTCAAGGACCCCGGACGATACGCCTTCGAGGACGCACAGGAGCACATCTACAAGCTGATGAAGAGTGATTCCTACAGCCGCTTCCTCCGCTCTACTTTCTACCAGGAGCTGCTACAGGCCAAGAAGAAGAAAAGTAAGAACTTATTCTGAGGAACTCCATTTCCAGGTCAAATCATTTAGATGGAATCACCCTGGAACAATGTAATGTTTTAGCcttaggagagagaggagagaggaccagaTCATTTGTACATTAATGTAATGTTTTAGccttgggagagagaggagagaggaccagaTCATTTGTACATTAATGTAATGTTTTAGGGAGAGAG
>XR_005053436.1
TCACCTCTGTCTCTTTCAGCTGTTTACCTCTGCAAAAGAACAATGCAAAACAAAGCCCGCCTGGAGCTGGCTGACTACGAAGCTGAGAGCTTAGCCAGACTGCAGAGAGCGTTCGCCAGGAAATGGGAGTTTATATTTATGCAAGCTGAAGCACAAGCAAAAGTTGACAAGAAGAGAGACAAAATTGAGAGGAAGATTCTGGACAGTCAAGAGAGAGCTTTCTGGGACGTACACAGACCAGTGcctggatgtgtgaACACAACAGAAGCCGACATCAAGAAATCCTCGAGGATGAAGCAGCCTCATAAAACAAGAAAGTCTGTGTACGGCCTCCAGAATGACATCCGGAGCCACAGCCCCGCCCACGCCCCCGCTCCAGAGGTCAAAGAGCCCACAGAGGAGGAGATGCGTCACCAGATTCAACACTGGCAAGCCCAACTAGACAGGCATCGGTTAAACATGTCCAAAGTGGCAGAAAGCTTGCTGAGCTACACAGAGCAGTATGTGGAGTATGACCCCTTCTTCACCTCCCCGGAGACCTCCAACCCCTGGATCTCTGATGACATCACCATCTGGGAACTGGAGACCAGTAAGGAGCCGGGCCAGCTGAGAGTGAAGAGGTGGGGCTTTGGGATTAACGAGGTGTTGAAGGATCCTGTTGGGAGAGAACAGTTCCTCAAGTTCCTGGAGTCAGAGTTCAGCTCAGAGAACCTCAGgTTCTGGCTGGCGGTTCAGGAGGTGAAGAAGAGGCCGATTCGGGAGGTCCCTACAAGGGTCCAGGAGATCTGGCAGGAGTTCTTGGCCCCCGGGGCCCCCAGTGCCATTAACGTTGACTCCAAGAGCTACGACAAGACCACACAGAATGTCAAGGACCCCGGACGATACGCCTTCGAGGACGCACAGGAGCACATCTACAAGCTGATGAAGAGTGATTCCTACAGCCGCTTCCTCCGCTCTACTTTCTACCAGGAGCTGCTACAGGCCAAGAAGAAGAAAAGTAAGAACTTATTCTGAGGAACTCCATTTCCAGAGTGGGACAGGTGTGGCTCCGTGACAACGATCACAACAGCAGCGGCTCACCGACGTGACTTCGGCTCCAACACAGTGGCACCAACACAGTGGCACCAACACAGTGGCTCCAACACAGTGGCTCCAACACAGTACCCACCTATAAGCCAATGAGGAAACAGCTGCTATGTGGGCATCTGGTATCGCTGGGTTATAAAGTTAGATCTGATTGAATCCAGGCCTTAGGGATCTATGTTATATGTATCGCTGAAGCATTACAGATCACATTGATAGAACATTTTAAAGGTAACCTCTGATTGAGGGGACATGTGAAGCGTTTACAGTGAAATGAGCTAACGCAGAAACATTGAAGGTCAAATCATTTAGATGGAATCACCCTGGAACAATGTAATGTTTTAGCcttaggagagagaggagagaggaccagaTCATTTGTACATTAATGTAATGTTTTAGccttgggagagagaggagagaggaccagaTCATTTGTACATTAATGTAATGTTTTAGGGAGAGAG
>TU116329
ATCAATCCTCTGTCTATTTGTCTCCTTTTTTTTTAGGTCAAATCATTTAGATGGAATCACCCTGGAACAATGTAATGTTTTAGCcttaggagagagaggagagaggaccagaTCATTTGTACATTAATGTAATGTTTTAGccttgggagagagaggagagaggaccagaTCATTTGTACATTAATGTAATGTTTTAGGGAGAGAGAGGAGAGAGGACCAGATCATTTGTACATTAATGTAATGttttagggagagagaggagagaggaccagaTCATTTGTACATTAATGTAATGttttagggagagagaggagagaggaccagaTCATTTGTTCATTAATGTAGTCTTGTCCGTCTCGAGGATCCACCACTCGACAGACAGACAAGTAGGTCTGACGTGAAAGGAGTTGATTTCCTATCCTGACATTTCATTCTGTCCCCAgcagtac
>TU116331
ATCAATCCTCTGTCTATTTGTCTCCTTTTTTTTTAGGTCAAATCATTTAGATGGAATCACCCTGGAACAATGTAATGTTTTAGCcttaggagagagaggagagaggaccagaTCATTTGTACATTAATGTAATGTTTTAGccttgggagagagaggagagaggaccagaTCATTTGTACATTAATGTAATGTTTTAGGGAGAGAGGAgagaggaccagaTCATTTGTACATTAATGTAATGttttagggagagagaggagagaggaccagaTCATTTGTTCATTAATGTAGTCTTGTCCGTCTCGAGGATCCACCACTCGACAGACAGACAAGTAGGTCTGACGTGAAAGGAGTTGATTTCCTATCCTGACATTTCATTCTGTCCCCAgcagtac

Function

symbol description
rgs7 Enables G-protein beta-subunit binding activity and GTPase activator activity. Involved in positive regulation of GTPase activity. Located in cytosol.

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989242.1 False 1661 mRNA 0.49 12 95689715 95720002
XM_036989249.1 False 1199 mRNA 0.51 12 95689715 95720002
XR_005053436.1 False 1550 mRNA 0.50 13 95689715 95720002
TU116329 False 449 lncRNA 0.48 2 95689394 95689919
TU116331 True 395 lncRNA 0.37 2 95689394 95689919
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118966144 LOC106577436 coding downstream 17459 95635147 ~ 95672256 (-)
LOC110533036 LOC106613909 coding downstream 1267830 94380623 ~ 94421885 (-)
LOC110531886 LOC106577432 coding downstream 1319688 94362379 ~ 94370027 (-)
LOC118966131 NA coding downstream 1331873 94350278 ~ 94357842 (-)
LOC118966130 LOC106577431 coding downstream 1347907 94323402 ~ 94341808 (-)
G103729 NA non-coding downstream 412 95683902 ~ 95689303 (-)
G103732 NA non-coding downstream 4053 95681030 ~ 95685662 (-)
G103735 NA non-coding downstream 54815 95632687 ~ 95634900 (-)
G103717 NA non-coding downstream 90948 95597993 ~ 95598767 (-)
G103759 NA non-coding upstream 309 95720311 ~ 95720735 (-)
G103760 NA non-coding upstream 20122 95740124 ~ 95740684 (-)
G103698 LOC106560310 other downstream 158756 95524392 ~ 95530959 (-)
G103509 NA other downstream 438057 95249092 ~ 95327889 (-)
G102887 NA other downstream 1266628 94422808 ~ 94423087 (-)
LOC110531895 LOC106613909 other downstream 1371479 94304371 ~ 94318374 (-)
G103749 NA non-coding upstream 10592 95700511 ~ 95701072 (-)

Expression

LOC110514271(rgs7) Expression in all Baseline Samples

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LOC110514271(rgs7) Expression in each Bioproject

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LOC110514271(rgs7) Expression in each Sample
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Co-expression Network