XLOC_019844 (dpysl3)


Basic Information

Item Value
gene id XLOC_019844
gene name dpysl3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 42970983 ~ 43022048 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039043
AGCAGTGTGCGCCACCACTAACATCAGCAAAAGGGCAGAATAAAGACAGCTGCATCCACCGACAACTAACCATGTCTTACCAAGGCAAAAAGAACATCCCAAAGATCACTAGCGAGAGGCTCCTGATTAAAGGTGGTCGGATTGTGAACGATGACCAGTCCTTCTACGCAGACATCTATATGGAGGATGGAGTCATCAAGCAGATTGGTGACAACCTGATCGTACCTGGAGGAGTGAAGACCATTGAAGCCAATGGGAAGATGGTGATCCCTGGAGGAATTGACATCCACACCCACCTACAGATGCCCTTCAGGGGTACAACCACCGCTGATGACTTCACCCAGGGCACCAAGGCTGCTCTGGCTGGAGGAACCACCATGATCGTGGATCATGTGATCCCGGAGCCGGGCTGCAGTCTGCTGGAAGCGTTCGATCGCTGGAGTAAATGGGCGGATGAGAAAGCCTGCTGCGATTACTCTCTGCATGTGGACATCACCCACTGGAACGACAGCGTCAAGCAGGAGGTAGAGACCCTCATCAAGGAGAAAGGAGTGAACTCGTTTCAGGTCTACATGGCTTTTAAAGACCTCTATCAGATGAGCAACACCGAGCTGTATGAGGTCTTCACCTTCCTTGGAGAGCATGGAGGAATTGCTCAGGTCCACGCAGAAAATGGAGAAATAATTGCTGAGgagcAGGCCCGTATGCTGGAGATGGGCATCACTGGACCCGAGGGACACGTCCTCAGCCGCCCTGAGGAGctggaGGCTGAAGCAGTGTTTCGAGCTGTCACTATTGCCAGTCAAACCAACTGTCCTCTCTATGTGACCCGCGTGATGAGCAAGAGTGCGGCAGACATCATCTCACAGGCCAGGAAAAAAGGTAACGTGGTGTTTGGAGAGCCAATCACGGCCAGTTTGGGAACTGATGGAACTCATTATTGGAGTAAGAACTGGGCGAAAGCTGCCTCTTTTGTGACATCACCACCTCTCAGTCCCGACCCAACCACTCCAGACTACCTGAACACCCTGTTGGCCAGTGGTGATCTGTCGGTGGTGGGCAGCGCTCACTGCACATTCTCTGTGGCTCAGAAGGCCATCGGGAAAGACGATTTCACCCAGATCCCTGAAGGAGTGAACGGGGCTGAGGAGAGGATGTCCATCATCTGGGACAAGGCTGTGGTCACTGGTAAAATGGACGAGAACATGTTTGTGGCTGTGACGAGCACCAATGCCGCCAAGATCCTGAACCTGTATCCACGCAAGGGCCGGATAGCTGTGGGCTCAGACAGTGATCTGGTTATCTGGGACACAGACGCCGTGCGGACCATCACTGCCAAAACACATCATTCTGCAGCCGAGTATAATGTGTTTGAGGGCATGGAGCTGAGGGGAGCCCCGATGCTTGTGGTCTGTCAGGGGAAGATCGTTCTGGAGGACGGGAACCTGCACGCCACCTCTGGCACCGGACGGTTCATTCCCTGCTCCCCGTTTCCGGACTTCGCTTACAAGCGCGTCAAAGCCAGGAAACAGCTGGCAATCCTGAAGGCCGTGCCCCGGGGCATGTATGACGGCCCCGTGTCTGAGTTTTCACCCATGTCGAGAGGTGGCACACCGTCAGCCTCCACCCGAACATCACCCACCAAAGTCCCCGTCAGGAACCTGCATCAGTCTGGATTCACACTATCAGGTCCTGAAGAAGCCCCTATCAGACCGGCTGGCAGACGTATCGTTGTGCCTCCCGGCGGCCGCTCCAACATCACCTCCCTCAGTTAAACACAAAGAGCGCCATGATAAAAGCAACCATGTAGAAGTAAGGTGATTAGAGAGGTAAAGAAAGAAACGAAACCGTAAAACACTGAACTCAAGCCTTACCCTTCATGATTTACTCCTGCTGAATGACTGAAGGTCAGTAGTCCACCTCTGaggaaggcaaaaaaaaaacaaaagcccagCAAACATTCACTCGGGCGTTTAGTGTAGCGACATGTTCATTTATGTGTTTAGATAAACGTAGGATTCccgtgaaaaagattttttttgtgtggatgtttttcaAAAGTTTGCGTTCGGTAGAGGAAGGACTACTGTCATGCATTGCAGAGGGCTTTATCTGAATAAAGAGGTGGAAGAATGACGTCAAAATCTGGACCAATAAATCCCTATGGGGTTTCCCTTTTTACAATAACGTGTGTGGAAAAcataacttaaagggatagttcacacaaaaatatcaattctgtcattattagctgtttcaaatctgtttgagtttctttcttctgttaaacataaagaaAAATTTACTGGCGAATGCAGAACAACTTGAAGTATGGATGTAAACGTCAGTTTTTTATCAGCATTCTTtataatatcttgttttgtgttcaacagaagaatgaaattaAGAAAAGTTTAGAGAGTAAATAGTTAGGAAATATCATTTTttggcgaactatccctttaattatacTTTCGCTCTATAATGTAAATGAGAAAGAACAGGCTCATTGGGGATACATGCTCAGATCTACATATTTGGGAAACTGCAAATACGTACCCTGGTATACATCCAGCCAATCCTATCCCACGgaaattcataattttatttttttagtagcCAATTCGTAGGAATTTGTACGACATGATTCATGCAATTTAATATGTTTTGCTTagccaatgacggttgggtttaggggtggggttttgtGCCATGCCTCCTcttaaaaactgtacatttttgtatgactgaactcgtatgaattcagtgactaaattgacaaaatgtaaaatagttacgtttcctcgtaagatcaggctggtcCTTCTGCATTATGTGTGTAAAACTAAAACTATGGGGTGGTTTCAATTTGGCAGATTTTTCGTAATATACTGCTAACAGCTTACCACTATATGGACAACCTTTCCAGGAAGGACAGTTTGCTCGATAGCTTACCTTGTACAGCGTCGGACTGGAACGCAGACTGGAGTCCTGCATATGATGGttccagaaacaaacaaaaaatttgaCAAAACAGGTTCATTGGGGATACATGTCCAGGGCTACATATTTGGGAAACCCCAAATACGTACCCAGGTATACATCCAACCAATGCTATCTCACAGAAAGTCATAACTTTTTTTAGTAgccaattcgtatgaatttgtcaACATGATTTATACAACTTAATACGATTTGCTCagccaatgacggttgggtttaggggtgaggtttTGTGCCATGCCTGatcttaaaaatgtaacatttttgtatgactgaactcgtatgaattcagtgactaaattgacaaaatgtaaaatagttacgtttcctcgaaGCCTTACGTTTCCTCGTAAGGCTGGTCcttttgcattttgtgtgtaaaactaAAACTATGGGGTGGTTTCGATTTGGCAGATCTTTCGCAATTTACTGCTATTTGCTTACCGTTATATGGACGTTACCAGGAAGGACAGTTTGCTTGATAGCTTACCTTGTACAGCTTCGGACTGGAACACAAAGTGGACCAGGGTTTGAGTCCTGCATATGATGGTTCCAGAAACAAACATAAAATTTGACAAAACAGGGTCATTGGGGGATACATGCCCAGGGCTACATATTTGGGAAACCGCAAATATGTACCCTGGTATACATCCAGCCAAtgctatctcacggcaattcataactttttgactTAGTAGCCAATTCGTATGAATCTGTATGAtgtcatttgtacaatttaatacaatttgctCAGCCAATGATGGTTGGGTCTAGGGGTGGGGATTTGTGCcaggcctcctttttaaaaatctgacattttcatacaactgaactcataTGAGTTCAtgcgaattagtcactaaactgacaaaaaaatataatagttaTGTTTCCCTCTGAGATTAGGCTGGTCCatctgcattttgtgtgtaaaacaaatgctacgcgACAGTTTCTATTTGCCTGATTTGTTCGCAATATACTGCTAACGGCTCACCATCATATGTACAACTTTTCCAGCAAGGTCAGTTTGCTTGATAGCTTACCTTGTACAGCATTGGACTGGGACGCAGAGTGGACCAGGGTTTAAGTCCAGCAAATAAAAACTGAGGCGTGACTCAAAATGGTAAGCTTTAACAGACCCTGTTTTACTCATTAATTGATAATGCCGTCCTAAAACCTAATGGAAAAAATTTTGACGTCAATCCTGCAGCTCTTTATTCCCTCATAAGCTTTATTTGCGTACATCAGCTGTGATTATTCTAGTAAATGTTACTTCATTTAAAGTGCTGAGTTGGTATCACAAGCATTTCTTAAACGTATAACTGAATGTTAAGGCAAACATGCAATGATGTATTGCTAAATATAACCGGCAtttgtttaaagggacagttcacacacaaTTGAGTATTCTGCCATAGTATGTTCAAAgggtttcttctgttgaacacaaaagaagatattttgaagaatgctggttgctggcacccattgacttccattccactatggaagtcaatgggggcgAGCATTCTTCAAACTctcttctttggtgttcaacagaggaaagaaacaaatgggtgagctatccctttaattcaCACACAGTACTGCTCTCATTACCTGTTTTAGATGCGCGCTTTGAAGGAATACGTGAACTTCAGTGGGAAACATGAAGGAAAACATAACATTAAAAGATATAATAATTGTTTGAAAGCCTGCAGGGGAAAGATATTCAGCTTCTGCATTTCAGTTCAGCTCAGATGACCAGGTGCTACAATCTCTTTTCTTAAATGTATTGGAATACGTTTTTGATATCCAAATGTTTGACGGTAGTTTGAGGTGTAGTTCAGCAGGACAGGTTTAGGTTAAAGCAGTTCACCATACTGTATGCATTCAATGACGATGGCATAACGTGATCTACCAAATGATGTGGAGTACAGTaggttgtttattatatttatgtaggtttgattgtatttttttttacagctgtctcaaaaaaaagaaaagaaaaaaa
>TCONS_00039044
TGCAGATGTGTGACAGTGCGGCAGTGGCTCTGCTCGTGTGAAGTTTAATTCTGGCTGATCTCCAGTCAGTCTCTCAGTCAGTCTGTCTCACACCATGGCTGAGGGCAGACGCCTGGACCGGGACGATGATCTGCCGGTTTACCTGGCTCGACCGAGCACGGCGGACCCGGTGGCGCGACAAAAATACGGAGGTTTGTTTTGTAACGTAGAAGGAGCGTATGAGAGCAAAACCATCGATTTCGACGCTCTTAGTGTCGGTCAGCGAGGCTCCAGAAGCCCGAGAGCCACAAACAGAGAAGAGCAGAAACCCTCAAAACAACAAACCAACTTTACAGCTTTACAAAGTGGAGGAGAAACTGAAGACAAGACACAGAGCGCGTTTGAGAGGGAGGATCTGCAACCGACGGTTACCaagAGCGAGAGGCTCCTGATTAAAGGTGGTCGGATTGTGAACGATGACCAGTCCTTCTACGCAGACATCTATATGGAGGATGGAGTCATCAAGCAGATTGGTGACAACCTGATCGTACCTGGAGGAGTGAAGACCATTGAAGCCAATGGGAAGATGGTGATCCCTGGAGGAATTGACATCCACACCCACCTACAGATGCCCTTCAGGGGTACAACCACCGCTGATGACTTCACCCAGGGCACCAAGGCTGCTCTGGCTGGAGGAACCACCATGATCG

Function

symbol description
dpysl3 Predicted to enable hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds. Acts upstream of or within axon guidance and peripheral nervous system neuron axonogenesis. Predicted to be located in cytoplasm and growth cone. Is expressed in nervous system; neural plate; spinal cord neural tube; and trigeminal placode. Orthologous to human DPYSL3 (dihydropyrimidinase like 3).

GO:

id name namespace
GO:0051764 actin crosslink formation biological_process
GO:0051491 positive regulation of filopodium assembly biological_process
GO:0010975 regulation of neuron projection development biological_process
GO:0051017 actin filament bundle assembly biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:0048678 response to axon injury biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0030334 regulation of cell migration biological_process
GO:0042995 cell projection cellular_component
GO:0030426 growth cone cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050720-2 Predicted to enable hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds. Acts upstream of or within axon guidance and peripheral nervous system neuron axonogenesis. Predicted to be located in cytoplasm and growth cone. Is expressed in nervous system; neural plate; spinal cord neural tube; and trigeminal placode. Orthologous to human DPYSL3 (dihydropyrimidinase like 3).

Ensembl:

ensembl_id ENSDARG00000002587

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039043 False 5023 mRNA 0.44 14 42970983 43015383
TCONS_00039044 True 689 mRNA 0.53 3 43003876 43022048

Neighbor

gene id symbol gene type direction distance location
XLOC_019843 zmp:0000001268 coding downstream 94418 42870101 ~ 42876565 (-)
XLOC_019842 stk10 coding downstream 139950 42785516 ~ 42831033 (-)
XLOC_019841 gabra6b coding downstream 768191 42156949 ~ 42202792 (-)
XLOC_019840 NA coding downstream 814731 42150360 ~ 42156252 (-)
XLOC_019839 gabra1 coding downstream 870512 42050351 ~ 42100471 (-)
XLOC_019845 jakmip2 coding upstream 7660 43029708 ~ 43079161 (-)
XLOC_019846 si:ch73-68b22.2 coding upstream 58421 43080469 ~ 43094210 (-)
XLOC_019847 p4ha2 coding upstream 75750 43097798 ~ 43131752 (-)
XLOC_019848 hspa4a coding upstream 115452 43137500 ~ 43171249 (-)
XLOC_019849 NA coding upstream 224659 43246707 ~ 43251824 (-)
XLOC_019838 NA non-coding downstream 922178 42043974 ~ 42048805 (-)
XLOC_019831 NA non-coding downstream 1377820 41590870 ~ 41593163 (-)
XLOC_019828 CABZ01034722.1 non-coding downstream 1619318 41351545 ~ 41351665 (-)
XLOC_019825 CU570984.1 non-coding downstream 1719435 41251431 ~ 41251548 (-)
XLOC_019850 NA non-coding upstream 303233 43325281 ~ 43325892 (-)
XLOC_019853 AL954767.1 non-coding upstream 368353 43390401 ~ 43393079 (-)
XLOC_019864 NA non-coding upstream 662814 43684862 ~ 43700280 (-)
XLOC_019872 NA non-coding upstream 1135025 44157073 ~ 44157770 (-)

Expression


Co-expression Network