G1166



Basic Information


Item Value
gene id G1166
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 444359 ~ 444585 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1467
gggccacagtgtctcctgacccctcctgtctcagcctccagtatttatgctgcagtagtttatgtgtcggggggctagggtcagtttgttatatctgaagTACATCTCcggtcctattcggtgtcctgtgtgaatttacgtgtgctctctctaattctctctttctttctctcactcggaggacctgagccctaggaccatgcctcaggactacctgacatgatgac

Function


NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1467 True 227 lncRNA 0.56 1 444359 444585

Neighbor


gene id symbol gene type direction distance location
tmem45a tmem45a coding downstream 138312 260364 ~ 306047 (-)
sft2d2a sft2b coding downstream 200740 237111 ~ 243619 (-)
LOC110523811 LOC106574160 coding downstream 246932 32649 ~ 197427 (-)
LOC118964585 NA coding upstream 58167 502752 ~ 504254 (-)
plcxd1 LOC106574112 coding upstream 188701 631974 ~ 681917 (-)
LOC110520928 jade3 coding upstream 257941 702526 ~ 736791 (-)
rp2 LOC106574114 coding upstream 304856 749441 ~ 771316 (-)
chst7 chst7 coding upstream 571157 1015742 ~ 1040056 (-)
G1160 NA non-coding downstream 1755 442385 ~ 442604 (-)
G1159 NA non-coding downstream 2068 442053 ~ 442291 (-)
G1158 NA non-coding downstream 2793 441332 ~ 441566 (-)
G1132 tomm70 non-coding downstream 28724 410176 ~ 415635 (-)
G1130 NA non-coding downstream 60431 383709 ~ 383928 (-)
G1169 NA non-coding upstream 5660 450245 ~ 450585 (-)
G1170 NA non-coding upstream 6972 451557 ~ 452027 (-)
G1171 NA non-coding upstream 7673 452258 ~ 452469 (-)
G1178 NA non-coding upstream 29729 474314 ~ 474661 (-)
G1163 NA non-coding upstream 39924 484509 ~ 487957 (-)
G202 NA other downstream 418686 25269 ~ 25673 (-)
G1355 NA other upstream 525600 970185 ~ 976099 (-)
G1651 LOC106574119 other upstream 1308660 1753245 ~ 1760430 (-)
G1788 NA other upstream 1647825 2092410 ~ 2097715 (-)
G1954 NA other upstream 2089445 2534030 ~ 2534513 (-)

Expression



Co-expression Network