XLOC_019846 (si:ch73-68b22.2)


Basic Information

Item Value
gene id XLOC_019846
gene name si:ch73-68b22.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 43080469 ~ 43094210 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039050
ATCATATGACTCGGCTTATCGACATCAGAAAAGAGTTTGCCAGATGTCTTCACGGATATATAGAAGCACTGGAGGGTCAAGTAGACGCTCTGAAAAGGACTCTGAATACGCTTGAGAAAGACTTTGACGACGCTCCTGAAGATCCAGAGAAATTCATCAGCAATCCCCTTGCTGCATTTCAGCTTGTGAGAAAACTGAGTCGGGTCTGGGCCACGACACAGGAACATCTAGAGGGAAGAAGAAATACAGAGACTTTAGAAAAGCTGAGGTCCACAGCTCAGACACTCCCCGGTGCAGATGATGTTGACGGTGTCGTGATGGCTCTGGTTCGACTGCAGGAAATGTACAGATTAGATCCAAGAAACATCTCCTTATTTTCTCATGTAATCTTGATGTTTGCCATTTCAGAAGTGAGCCATAACTTAACACTggatccagatgaaactttccaCATCGCCATGATCTCCTATCACAGTCATCGGTTACAGTATGCGCTCCTCTGGATGGAGGAAACCCTCAGGAAACTAGATGAGGGCGAGGAAGCCAATGTCACTAAAGACGAAGTGCTTTACCAACTGGCTTCATTTTCCCATCAGCTGGCAGTGATTCAGATGCCATCTAGACCAGAACCCACTAATGGGGGTCTGCTTCATCCTGCGCTTCACAAAAGTTTGATAGAGAGCATCAAGACCTGGGAATGGACTGCAAAATACATCCCTCACACTGACACGGAGAACACATACGAGGCTCTTTGCACAGGAAAAAGAGTTGCGATGacaccacagagagagagaaaactggTGTGCAGGTACAGGAGAGGAAGAGGGAACCCGCTGATGCTCTTCAAAGAGGAAGTGGAGTGGGACCAGCCGATGATCCTACGATACCATGACTTTCTTTCTGAAGGAGAGATCGACACCATCAAAACACTGGCCAGACCCAAGCTTTCCAGAGCTCAGGTCATTGATGCAGTCTCTGGGAAAAGGGTTTCTGCTGCGTCCCGTGTGTCACAGAGTGCGTGGCTCTATGAGGATGAAGATCCTGTGGTCACTCAGGTCAACCAGAGAATCGCTGATGTCACTGGACTGGAGCTACAGACAGCGGAAAGCCTCCAGattgCAAATTATGGAATCGGAGGCCAGTATGAGCCACATTACGACTCAAAGTTGACAAATGACTCAGACTTTCAGCTCAGAGGAGGCCGGATTGCTACTGTCCTTATCTATATGAGCGACGTGGACATTGGTGGAGCAACAGTTTTCCCTGATGTTGGAGCAGCACTTCAGCCGAAGCGAGGTTCAGCAGTGCTGTGGTTTAACCTGCTGAGGAATGGGAATGAAGATATCCGAACTTTACATGCAGCATGTCCTGTGTTTGTAGGCAGTAAATGGGTGGCCAACAAGTGGATTCGTACGTATGGGCAAGAGTTCAGAAGAAAGTGCTCCACAATCAAATCTGATTAA
>TCONS_00039051
TATGTTTCACAGATGTAATCTTGATGTTTGCCATTTCAGAAGTGAGCCATAACTTAACACTggatccagatgaaactttccaCATCGCCATGATCTCCTATCACAGTCATCGGTTACAGTATGCGCTCCTCTGGATGGAGGAAACCCTCAGGAAACTAGATGAGGGCGAGGAAGCCAATGTCACTAAAGACGAAGTGCTTTACCAACTGGCTTCATTTTCCCATCAGCTGGCAGTGATTCAGATGCCATCTAGACCAGGTAAAGATGGTTGTAACGCTGAGAGTGAGAGTGATGGAGTTCCGTGTGCAGCTTAATTTTAAGAGAATCTGGTTGATCCGGGTGATCTGGCTGTCTTTTTGTCTTCTGGATTGTTTCTAGAACCCACTAATGGGGGTCTGCTTCATCCTGCGCTTCACAAAAGTTTGATAGAGAGCATCAAGACCTGGGAATGGACTGCAAAATACATCCCTCACACTGACACGGAGAACACATACGAGGCTCTTTGCACAGGAAAAAGAGTTGCGATGacaccacagagagagagaaaactggTGTGCAGGTACAGGAGAGGAAGAGGGAACCCGCTGATGCTCTTCAAAGAGGAAGTGGAGTGGGACCAGCCGATGATCCTACGATACCATGACTTTCTTTCTGAAGGAGAGATCGACACCATCAAAACACTGGCCAGACCCAAGCTTTCCAGAGCTCAGGTCATTGATGCAGTCTCTGGGAAAAGGGTTTCTGCTGCGTCCCGTGTGTCACAGAGTGCGTGGCTCTATGAGGATGAAGATCCTGTGGTCACTCAGGTCAACCAGAGAATCGCTGATGTCACTGGACTGGAGCTACAGACAGCGGAAAGCCTCCAGGTATTCACAGTCCTCATGAggctgcaaatatatatatatatatatatatatatgcgatatatatgcgatatatatatatatatatatatatatattgcagtggcgcagtgggtagcacgttcacctcacagcaaaagggttgctggatcgctggttcgatcctcggctcagttggtgtttctgtgtggagtttgcatgttcaccctgcgttcgcgtgggttcgcgtgggtgctccggtttcccccacagtccaaagacatgcggtccaggtgaaatgggtagactaaattgtccatagtgtatgaatgtgtgtgtggatgtttcccagagatgggttgcggttgtaagggcatctgctgcgtaaaaactagctggataagttggcggttcattccgctgtggcgaccccagattaataaagggactaagccgacaagaaaatgaatgaatgaatatatatatatatatatatatatatatatatatatata

Function

symbol description
si:ch73-68b22.2 Predicted to enable procollagen-proline 4-dioxygenase activity. Predicted to be involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to be located in endoplasmic reticulum lumen and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000094609

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039050 False 1463 mRNA 0.48 13 43080469 43094210
TCONS_00039051 True 1357 mRNA 0.46 4 43084097 43088991

Neighbor

gene id symbol gene type direction distance location
XLOC_019845 jakmip2 coding downstream 1308 43029708 ~ 43079161 (-)
XLOC_019844 dpysl3 coding downstream 58421 42970983 ~ 43022048 (-)
XLOC_019843 zmp:0000001268 coding downstream 203904 42870101 ~ 42876565 (-)
XLOC_019842 stk10 coding downstream 249436 42785516 ~ 42831033 (-)
XLOC_019841 gabra6b coding downstream 877677 42156949 ~ 42202792 (-)
XLOC_019847 p4ha2 coding upstream 3588 43097798 ~ 43131752 (-)
XLOC_019848 hspa4a coding upstream 43290 43137500 ~ 43171249 (-)
XLOC_019849 NA coding upstream 152497 43246707 ~ 43251824 (-)
XLOC_019850 NA coding upstream 231071 43325281 ~ 43325892 (-)
XLOC_019851 sowahaa coding upstream 232703 43326913 ~ 43328056 (-)
XLOC_019840 NA non-coding downstream 924217 42150360 ~ 42156252 (-)
XLOC_019838 NA non-coding downstream 1031664 42043974 ~ 42048805 (-)
XLOC_019831 NA non-coding downstream 1487306 41590870 ~ 41593163 (-)
XLOC_019828 CABZ01034722.1 non-coding downstream 1728804 41351545 ~ 41351665 (-)
XLOC_019825 CU570984.1 non-coding downstream 1828921 41251431 ~ 41251548 (-)
XLOC_019853 AL954767.1 non-coding upstream 296191 43390401 ~ 43393079 (-)
XLOC_019864 NA non-coding upstream 590652 43684862 ~ 43700280 (-)
XLOC_019872 NA non-coding upstream 1062863 44157073 ~ 44157770 (-)

Expression


Co-expression Network