G420


Basic Information

Item Value
gene id G420
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 557387 ~ 557594 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU501
ctcaatagggacgcataggaacgcagagccttctaaataagagtcccttcctgtttggatttttctcaggctttcgcctgcaacatcagttctgttatactcacagacaatatttttacagttttggaaactttagaatgttttctatcctaagctgtcaattatatgcatattctagcatcttgtcctgacaaaatatcccgtttac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU501 True 208 lncRNA 0.38 1 557387 557594

Neighbor

gene id symbol gene type direction distance location
tbc1d23 tbc1d23 coding upstream 60259 439965 ~ 497128 (+)
LOC110532027 tomm70 coding upstream 136154 384207 ~ 421233 (+)
nit2 nit2 coding downstream 44509 602103 ~ 617595 (+)
slc9a7 slc9a7 coding downstream 224246 781840 ~ 1244153 (+)
tubgcp5 tubgcp5 coding downstream 531802 1089396 ~ 1133908 (+)
cyfip1 LOC106590724 coding downstream 616117 1173711 ~ 1300624 (+)
LOC118964682 NA coding downstream 769728 1327322 ~ 1328266 (+)
G399 NA non-coding upstream 82806 474223 ~ 474581 (+)
G391 NA non-coding upstream 90859 464887 ~ 466528 (+)
G396 NA non-coding upstream 93369 463502 ~ 464018 (+)
G376 NA non-coding upstream 121592 435513 ~ 435795 (+)
G373 NA non-coding upstream 124752 431661 ~ 432635 (+)
G447 NA non-coding downstream 55060 612654 ~ 616251 (+)
G456 LOC106574112 non-coding downstream 74372 631966 ~ 633986 (+)
G464 NA non-coding downstream 92144 649738 ~ 655342 (+)
G465 NA non-coding downstream 93485 651079 ~ 653450 (+)
G389 NA non-coding downstream 103942 661536 ~ 662909 (+)
G166 NA other upstream 237413 318047 ~ 319974 (+)
G51 NA other upstream 427124 120466 ~ 130263 (+)
G50 NA other upstream 437080 112959 ~ 120307 (+)
G26 NA other upstream 463669 56555 ~ 93718 (+)
G19 NA other upstream 485088 52711 ~ 72299 (+)
G583 NA other downstream 446189 1003783 ~ 1010207 (+)
G961 NA other downstream 1521304 2078898 ~ 2079603 (+)
G998 LOC106576565 other downstream 1701289 2258883 ~ 2305334 (+)
G2016 NA other downstream 2086741 2644335 ~ 2645169 (+)
G2343 NA other downstream 2657103 3214697 ~ 3216234 (+)

Expression


Co-expression Network