G535


Basic Information

Item Value
gene id G535
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 837981 ~ 839050 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU646
AGTAGCCCCACTAAAtacagtacccctgtatatagcctccacattgactctgtactgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccatattgactctgtaccgtaacaccctgtatatagcctccacattgactctgttccggtaccccctgtatatagcctccacattgactccgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccagtaccccctgtatatagcctccacattgactctgtaccggtgccccctgtatatagcctccacattgactctgtaccgtaataccctttatatagcctccacattgactctgtaccggtacccctgtatatagtctccacattgactctgtaccggtacccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccggtacccctgtatatagcctccacattgactctgtaccagtaccccctgtatatagcctccacattgactctgtaccggtgccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggt

Function

NR:

description
PREDICTED: uncharacterized protein LOC106593042

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU646 True 1031 lncRNA 0.34 2 837981 839050

Neighbor

gene id symbol gene type direction distance location
nit2 nit2 coding upstream 220386 602103 ~ 617595 (+)
tbc1d23 tbc1d23 coding upstream 340853 439965 ~ 497128 (+)
LOC110532027 tomm70 coding upstream 416748 384207 ~ 421233 (+)
tubgcp5 tubgcp5 coding downstream 250346 1089396 ~ 1133908 (+)
cyfip1 LOC106590724 coding downstream 334661 1173711 ~ 1300624 (+)
LOC118964682 NA coding downstream 488272 1327322 ~ 1328266 (+)
gabrb3 LOC107673538 coding downstream 495047 1334097 ~ 1398380 (+)
atp10a atp10a coding downstream 621017 1460067 ~ 1596619 (+)
G477 NA non-coding upstream 53865 698948 ~ 784116 (+)
G514 NA non-coding upstream 57995 777327 ~ 779986 (+)
G500 NA non-coding upstream 81555 749064 ~ 756426 (+)
G486 NA non-coding upstream 108882 728321 ~ 729099 (+)
G485 NA non-coding upstream 110098 727573 ~ 727883 (+)
G541 NA non-coding downstream 19335 858385 ~ 858631 (+)
G542 NA non-coding downstream 20710 859760 ~ 860156 (+)
G544 NA non-coding downstream 38181 877231 ~ 884260 (+)
G546 NA non-coding downstream 45438 884488 ~ 887639 (+)
G545 NA non-coding downstream 48261 887311 ~ 940693 (+)
G166 NA other upstream 518007 318047 ~ 319974 (+)
G51 NA other upstream 707718 120466 ~ 130263 (+)
G50 NA other upstream 717674 112959 ~ 120307 (+)
G26 NA other upstream 744263 56555 ~ 93718 (+)
G19 NA other upstream 765682 52711 ~ 72299 (+)
G583 NA other downstream 164733 1003783 ~ 1010207 (+)
G961 NA other downstream 1239848 2078898 ~ 2079603 (+)
G998 LOC106576565 other downstream 1419833 2258883 ~ 2305334 (+)
G2016 NA other downstream 1805285 2644335 ~ 2645169 (+)
G2343 NA other downstream 2375647 3214697 ~ 3216234 (+)

Expression


Co-expression Network