XLOC_019856 (ankrd46a)


Basic Information

Item Value
gene id XLOC_019856
gene name ankrd46a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 43475746 ~ 43485351 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039066
ATGTCGTACGTGTTCGTCAACGACTCCCTGCAGGCTACAGTGCCGCTGCTGCAGGCCTGCATCGATGGGGATCTGGCTCACACCAAACGCCTCCTGGAGTCTGGGTTTGACCCGAACATGAGAGACTGCCGCGGACGCACCGGCCTGCATCTGGCTGCCGCTCGGGGGAACGTGGAGATCTGCTCTCTTCTCCATAAGTTTGGTGCTGATCTGCTGGCCACCGACTCGCAGGGAAACACGGCTCTGCACATGTGCGGACATGTGGACACCATCCAGTTCCTGGTGTCCAACGGCCTCAAGATTGACATCTGTAATCACAACGGAGCCACTCCTCTGGTTCTGGCCAAGAGACGCGGCGTGAATAAAGATGCTCTTCATCTGCTGGAGGGTCTGGAGGAGCAGGAGGTGAAGGGCTTCAACCGCAGCTCACACTCCAGTCTGGAGAAGATGCACATGGCTGAGAATGAGAGTGCCATGGAGAGCCACTCTCTCCTGAACCCACACCTGCACCACAGCGACGGCGTGTTGTCCAGCTTCAAAACCACCTGGCAGGAGTTTGTGGAAGATCTTGGTTTCTGGCGAGTGCTCCTGCTGCTCCTCGTCATCGCTCTGCTCTCGCTCGGCATCGCTTATTACGTCAGCGGAGTCTTACCTTTCGCATCCAACCAGCTGGAACTTGTGCATTAAACCACCGACACATAAAAAGAtcattaacccttgtgtattgttcagattgactcccctttcgttatgttgggggctgtttttgccccgttgacttccattataatcacatttataaatCGCAAAGCCTTGACAggatataatcatgcattcttaattgttggtggttttccctgatGGGAAGAGAAcagatgtgtcatttttactgctgATCATCAGTCGGcaacattaaccctttagatatgCCTGCGCAAAAGAGTTTATAGCTTTTATATGAAGTtctgtggagtaaaacagcagcttatagtgtgtgtgcagaaatacacttactgtgtttactatgttctgagagctcaGCGACTTATTTAGATTTTCTGAGACATATCAAGGTGAGTATAAGACCTTTTCACACTCACCTTGATTCAGTATGTCTGAGAAAGTCAAAATAAAACCAGCAACAATccagaatgcatgattatatggtgtcaatgctttgcaatcaaaaaatgtgatcaaaatggaagtcaatggggtaaaaacagcccccaacCTAACCAAAGTGTTGTAAATTTGTCCGGAGTGTTTTttcaaaataagatgtcaccgAAACTCATTTCAATTTCTGAAACACAGgaaagggcgaagcagtggcgcagtaggtagtgctgtcgcctctgggtcgctggttcgagtctcagcttagatgacgtttctgtgtggagttagcatgttctccctgcgttcgcgtgggttttctccgggttcctccgcaaagacatgcggtacaggtgaattgggtaggctaaattgtccgtagtgtatgtgtgtgaatgagtgtatgtggatgtttccctgagatgggttgcagctggaagggcaacttgctggataagttggcggttcattctcctgtggcgaccctggattaataaagggactaagccgacaagaaaatgaatgaaacacagggaaagttgtggccaaacgaagtctcaaaatcaccccagagtggataaatacaccccaacagcacacaagggttatgAAGAAGTCATTTTTCtgattgttaaagggatagttcacccaaaaattaaagttcggtcattatttactcatcctgagtttcttttttttctgttaaatgcaAAGGAAAATTTTCTAAAGAGTGCTGGAataggggcagcatggtggcgcagtgggtcgcctcacaacaagaaggtcgctggttcaagcacCGGTtggatcagttgacatttctgtatggagtttgcatgttctcccaatgagtgctccgttttcccccacaagtccaaatacatgttgtttaggtgaattgggaaagctaaattgtttgttgtgtatgtgtattgtgtatggatgtttcccagtgatgggttgcagctggaatggcatccactgcgtaaaaaccatatgctggataagttggcggttcattccgctgtggcgaccccagatcaataaagggactaagctgaaaagaaaatgaatgaatgaatgagtgctggggaaaaaaacagccattgactacCGTGGTATTTTTTattcctactattgaagtcaataggTGATTTTTGCAAACACTCTTCAGTATATCTGCCtgtgcgttcaacagaagaaagaagttcatgaaagtgagtaaatgTTGAGGAGATGTTCATTTTTTAGGTGTACTGTTTCTTTAATGTTTCCTACAGTTACTGATTGTGCATACACATGCTTTATATTGTAACCGTACACTCTGTGATTTGAATATTAAGCGTTTTTGTATATTAATGTAAATAGACATTTCATGCGCTGAACTAATTGTCATTTCTATTTTCCTCTTGCCTTTTTTTACTGTGTATCTGCACATTCCTTGTGTTGTGTGTAACCATCCACACTTTGCCACCTTATTGTAATTTAGCTTAAATTATTGATATAAACATTACATATTTGTGTAAGCAAACAAAGTGTGAGGACATTTTAACAATGGTTTATGTAAAATGGCTCATTGCACAACCTTTTAATGCATTGACTTTCATGTATAAACAGATAATACCTGCTACAATGGATGCGTTCATAGAAATGTAGGTATAATTTTTAAGAACCTTCTGTTTACATATGTAACATTTCATTACAGTGatcttgaaataaataaaatacttgtgAAATGAATCCTGTTTcttatcattaataaaaaaaattcaatatttat
>TCONS_00039067
TCCACAACAGAGGCTGGGAAAAAAACTGCGAATTTTTTTAAGATTCCGTCGAGGGAGCACTCTGAGATGTCGTACGTGTTCGTCAACGACTCCCTGCAGGCTACAGTGCCGCTGCTGCAGGCCTGCATCGATGGGGATCTGGCTCACACCAAACGCCTCCTGGAGTCTGGGTTTGACCCGAACATGAGAGACTGCCGCGGACGCACCGGCCTGCATCTGGCTGCCGCTCGGGGGAACGTGGAGATCTGCTCTCTTCTCCATAAGTTTGGTGCTGATCTGCTGGCCACCGACTCGCAGGGAAACACGGCTCTGCACATGTGCGGACATGTGGACACCATCCAGTTCCTGGTGTCCAACGGCCTCAAGATTGACATCTGTAATCACAACGGAGCCACTCCTCTGGTTCTGGCCAAGAGACGCGGCGTGAATAAAGATGCTCTTCATCTGCTGGAGGGTCTGGAGGAGCAGGAGGTGAAGGGCTTCAACCGCAGCTCACACTCCAGTCTGGAGAAGATGCACATGGCTGAGAATGAGAGTGCCATGGAGAGCCACTCTCTCCTGAACCCACACCTGCACCACAGCGACGGCGTGTTGTCCAGCTTCAAAACCACCTGGCAGGAGTTTGTGGAAGATCTTGGTTTCTGGCGAGTGCTCCTGCTGCTCCTCGTCATCGCTCTGCTCTCGCTCGGCATCGCTTATTACGTCAGCGGAGTCTTACCTTTCGCATCCAACCAGCTGGAACTTGTGCATTAAACCACCGACACATAAAAAGAt

Function

symbol description
ankrd46a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ANKRD46 (ankyrin repeat domain 46).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2643 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ANKRD46 (ankyrin repeat domain 46).

Ensembl:

ensembl_id ENSDARG00000044328

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039066 False 2899 mRNA 0.43 3 43475746 43482426
TCONS_00039067 True 774 mRNA 0.56 4 43477937 43485351

Neighbor

gene id symbol gene type direction distance location
XLOC_019855 tmem185 coding downstream 1734 43460631 ~ 43474012 (-)
XLOC_019854 stk26 coding downstream 18192 43420304 ~ 43457554 (-)
XLOC_019852 ccni2 coding downstream 77289 43379878 ~ 43398457 (-)
XLOC_019853 AL954767.1 coding downstream 82667 43390401 ~ 43393079 (-)
XLOC_019851 sowahaa coding downstream 147690 43326913 ~ 43328056 (-)
XLOC_019857 irs4a coding upstream 30322 43515673 ~ 43527198 (-)
XLOC_019858 si:ch73-362m14.2 coding upstream 50988 43536339 ~ 43550120 (-)
XLOC_019859 si:ch73-362m14.4 coding upstream 95990 43581341 ~ 43606502 (-)
XLOC_019860 htr2cl2 coding upstream 124101 43609452 ~ 43616586 (-)
XLOC_019861 si:ch1073-263o8.2 coding upstream 145087 43630438 ~ 43636631 (-)
XLOC_019850 NA non-coding downstream 149854 43325281 ~ 43325892 (-)
XLOC_019849 NA non-coding downstream 223922 43246707 ~ 43251824 (-)
XLOC_019840 NA non-coding downstream 1319494 42150360 ~ 42156252 (-)
XLOC_019838 NA non-coding downstream 1426941 42043974 ~ 42048805 (-)
XLOC_019864 NA non-coding upstream 199511 43684862 ~ 43700280 (-)
XLOC_019872 NA non-coding upstream 671722 44157073 ~ 44157770 (-)
XLOC_019876 CU855912.1 non-coding upstream 1082829 44568180 ~ 44568266 (-)
XLOC_019879 NA non-coding upstream 1296917 44782268 ~ 44785206 (-)
XLOC_019881 NA non-coding upstream 1636011 45121362 ~ 45123821 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000040_01396138_01397237 ANKRD46, ANKRD46A, ANKRD46B coding CI01000040 null 1395533 ~ 1397237 (-)