XLOC_019858 (si:ch73-362m14.2)


Basic Information

Item Value
gene id XLOC_019858
gene name si:ch73-362m14.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 43536339 ~ 43550120 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039069
CAGTTTCTGTCATTCAGCGAACTTGAACTCATAGAGGAAGCAAGCAGCCCACTTCCCATCGTCATGGTAACAGCATGTGAATGTGTTGAGCCACACTGTAGAGACGGGCAGCGTTAAAACAGCATCACAGGGCACGGCTCCGCATCCAGAACCCAGCGAAGGTTGTGTCTTTTCGAGAACATTAGCCGCAGCCGATGGGATTCATGACACGTTAAAATTCAAGATGGAAAACACAGCCTTGGCTTTTTCTGCCCAGGGCTGGTGTGGCCCCAATGTTTCCACCTTTTCATCGGAGTGGGATGATAAAATGAACTCCTTTCTCAAGGCACCCGACGTGATCAAACCCCCTCCGCAGTTTCAGGATCCAGAGGAGCCGGGTCCAGCATCACCCACCAGCACCGCTGTTGTGAAAAGACGAGAAAAGGATGGTGTGAAAAAAGAGCGTAGGAGTAGACCAGCGAGTAACATCGAGCTCCACAGACGCTCCTTGTCACTTTCCACCGCTGTCAACTCCAACCCTGGTGTGGTCCGACGCCGATGTGAAAGCTACGCTCTTTCCTATCCCAGCAGCAGCTCGGAAGACAGCGGCAGTGACAGCACGTCGGCCAGGAGGAGTGATCTTCTTCCAGATGCAGTGCCAAGATCCAGATCCCGGAGCATTATCCTTAGGAAGGCTAAAAGCAAACCTGCTCCTCCTGTGCGAACAGTCTCACTGCAAAGGCTCGCAGCGGCAAAGCATTCAGAACATAAAGTGCAAGGCCTTAAAAAAGATACCACAAAACTGCCAGATCTCATCCCAACCTCAAAGCAAGAACTCAGTAAGGGCACTCCTGAAGCACCTGGTAAGGTCGTATTGATGGCAACGGTTTCTTCCCACAAAGCACTTAATGAGCTTCGATCCAGCGAACCAACTCCCATGCCAATCCACGAATGTGGTCATTCTGAAATGAACACATCCCCGTCCTCTTCGCACTCTTCCACATCTCAGCCGTCCATCTGTTCTCCTTCGAAGCGCATCGGCTCAAACTCTCCATCCAGTGGCTACGCAAGCCAGTGTGAAACTCCAACCCAATCAGCCCTTTCCCAATCGGTCAGCATGGGACCTTCGCCATTAGCCTGCAGGATGCGGCATAAGCCGACCAGTGTTATTCCTGGCCAAAGAGCAAGAAACCGCAACGCAAGGCTGTCTCTTCAGCTTCCAGAATTTCAGAAGCACACTCCCGATCCAGAGCCTTCCGCGGTGCAGCCGAAAGTGAGCCTAAGACGCAACTCGGACAGCACCGAAGCCACCAGGCCCAAGCAAAGGATGAGTAGCAGCCTGCTGGTAATGCCGATGGTTACTCAAGAGGAGCTGAACAACGTGCAGCTACGCTCCGTCAGCAGTTCTGATCTGGAGAACGCTCAGGAAATCACGGCCAACATTATCGAGGAGGAGACGGAGAGATGCGGAAAATCCTTCAGCCCTAAGAGCAGCCAAAAACCCAAACCTCCCGTGGCTCCGAAGCCGCAGAGAAACAAGTGGCCACCCAACGCACAACGCTTTGGGCCAACTTCTGAAGCAGAACCGCCAACAGTCAGCGAGAGATCAGAAGACATCTACGCAATGGTTAACAAAGTCAAACCTACAGTGAGCGTAAAGCCGCACAGCATTGAACAAGCACCTCATCTGAGGCAGCAGATTGTTCCGGATGCTCGTTCTCCACAGATGAGAGACCCCCGTCAACCTCAACCCCCATGCACTTTAGAGTCAAAGAATGCAAAAGTTCCCCCATTAAACACAGCCAGCCGCATTAGCCAGCTTCACAAGAAGAGAAGAGCCCCTACACCGCCTCTGGCAAAGACTCCAGATGTGGACGGCTCACTTTATCCAAACCCAGCCGATGCCCAGTCTCCAACTAATCTCTGCAAGTCTCCAAAATCTCCGACCTCCGCAAGTCAATTTCATGTAACTCTGTATGGCGTGATACCATCGTACCCTTTGGTCACGGAGCCACAGCACTCGAGGGAACCAGATCATCCGTCATACGATGTAGAGAAGAGGGATCGAATGCCTGACCTCGGACCACTACAGTTAGTAGGAGAAGGAGACGATGTATTTCTTTACAAGTCCAAATCCCAAACCACGGAGGACCTGTTCACCATCATTCACAGGTCTAAAAGAAAGCTCCTGGGTCGCAAAGACTCCTTCGACAATAAGCAAGGAGACTCTGGGACTCAGACTCTCGGCAGCGGAGCTTCACGGATCAGTTCTCAGAACGACAACTTCATGGCTTTCCTGAGGAGGACACGAAGCGCCAAAGCCGGCTGCGGAGAGCGGATCTCAGCCACGGAGCTGCTCAGAAGCTCCAAGCCCACGGCTAACATTGCAGCAAACATCAGCCATTGCAAAAATAGCTACGTACAGTCACACGGTCCATAAAATATCATCAGTTTTACTAATC

Function

symbol description
si:ch73-362m14.2 Predicted to be involved in cell differentiation.

GO:

id name namespace
GO:0030154 cell differentiation biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-120215-235 Predicted to be involved in cell differentiation.

Ensembl:

ensembl_id ENSDARG00000090164

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039069 True 2441 mRNA 0.52 5 43536339 43550120

Neighbor

gene id symbol gene type direction distance location
XLOC_019857 irs4a coding downstream 9141 43515673 ~ 43527198 (-)
XLOC_019856 ankrd46a coding downstream 50988 43475746 ~ 43485351 (-)
XLOC_019855 tmem185 coding downstream 62327 43460631 ~ 43474012 (-)
XLOC_019854 stk26 coding downstream 78785 43420304 ~ 43457554 (-)
XLOC_019852 ccni2 coding downstream 137882 43379878 ~ 43398457 (-)
XLOC_019859 si:ch73-362m14.4 coding upstream 31221 43581341 ~ 43606502 (-)
XLOC_019860 htr2cl2 coding upstream 59332 43609452 ~ 43616586 (-)
XLOC_019861 si:ch1073-263o8.2 coding upstream 80318 43630438 ~ 43636631 (-)
XLOC_019862 si:dkey-229d11.5 coding upstream 94453 43644573 ~ 43666481 (-)
XLOC_019863 CR792441.7 coding upstream 101834 43651954 ~ 43653330 (-)
XLOC_019853 AL954767.1 non-coding downstream 143260 43390401 ~ 43393079 (-)
XLOC_019850 NA non-coding downstream 210447 43325281 ~ 43325892 (-)
XLOC_019849 NA non-coding downstream 284515 43246707 ~ 43251824 (-)
XLOC_019840 NA non-coding downstream 1380087 42150360 ~ 42156252 (-)
XLOC_019838 NA non-coding downstream 1487534 42043974 ~ 42048805 (-)
XLOC_019864 NA non-coding upstream 134742 43684862 ~ 43700280 (-)
XLOC_019872 NA non-coding upstream 606953 44157073 ~ 44157770 (-)
XLOC_019876 CU855912.1 non-coding upstream 1018060 44568180 ~ 44568266 (-)
XLOC_019879 NA non-coding upstream 1232148 44782268 ~ 44785206 (-)
XLOC_019881 NA non-coding upstream 1571242 45121362 ~ 45123821 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000040_01429591_01433407 NA coding CI01000040 null 1429491 ~ 1433407 (-)