G1115


Basic Information

Item Value
gene id G1115
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 2392794 ~ 2396261 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1413
gtcctaaccactgtaacaggcttggtcctaaccaatgtaacaggcttggtcctaaccactgtaacaggcttggtcctaaccactgtaacaggcttggtcctaaccactgtaacaggcttggtcctaaccactgtaacaggcttggtcctaaccactgtaacaggcttggtcctaactaCTGTAACAAGCTTGGTCATAACT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106576983 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1413 True 201 lncRNA 0.45 2 2392794 2396261

Neighbor

gene id symbol gene type direction distance location
zbtb11 LOC106560622 coding upstream 134469 2212135 ~ 2258325 (+)
dpt LOC106574207 coding upstream 199899 2176672 ~ 2192895 (+)
nme7 at233 coding upstream 294110 1984326 ~ 2101039 (+)
tmem131 LOC102783117 coding upstream 425218 1859377 ~ 1967576 (+)
LOC110520782 LOC106574119 coding upstream 622360 1732789 ~ 1770434 (+)
LOC110531937 LOC106574099 coding downstream 142073 2538334 ~ 2580308 (+)
LOC118966170 NA coding downstream 1003165 3399426 ~ 3400148 (+)
bcl6aa LOC106574104 coding downstream 1206402 3602663 ~ 3624582 (+)
LOC118965227 NA coding downstream 1426875 3822517 ~ 3826226 (+)
trnap-cgg NA coding downstream 1451362 3847623 ~ 3847694 (+)
G1094 NA non-coding upstream 34068 2357682 ~ 2358726 (+)
G1085 NA non-coding upstream 52372 2339440 ~ 2340422 (+)
G1083 NA non-coding upstream 54059 2336445 ~ 2338735 (+)
G1069 NA non-coding upstream 78880 2313153 ~ 2313914 (+)
G998 LOC106576565 non-coding upstream 87460 2258883 ~ 2305334 (+)
G1929 NA non-coding downstream 39594 2435855 ~ 2436107 (+)
G1934 NA non-coding downstream 55588 2451849 ~ 2452063 (+)
G1936 NA non-coding downstream 59811 2456072 ~ 2533667 (+)
G1942 NA non-coding downstream 135288 2531549 ~ 2532317 (+)
G1957 NA non-coding downstream 139322 2535583 ~ 2535795 (+)
G961 NA other upstream 313191 2078898 ~ 2079603 (+)
G583 NA other upstream 1382587 1003783 ~ 1010207 (+)
G166 NA other upstream 2072820 318047 ~ 319974 (+)
G51 NA other upstream 2262531 120466 ~ 130263 (+)
G2016 NA other downstream 248074 2644335 ~ 2645169 (+)
G2343 NA other downstream 818436 3214697 ~ 3216234 (+)
G2464 NA other downstream 1107008 3503269 ~ 3503581 (+)
G3176 NA other downstream 1779062 4175323 ~ 4178073 (+)
G3234 NA other downstream 2002643 4398904 ~ 4399444 (+)

Expression


Co-expression Network