G1946


Basic Information

Item Value
gene id G1946
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 2467819 ~ 2471281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2550
tttgtgcccctgatgtaatggtgtaggggtgtagtcctccggtggttttggtcctatggagaccgtggaggggtgctgtctggtgggagagaaggtccattggtgtgggatgtttcccccgctgtgtagaagctttggagaaatgttcattaTGTGGCGTTTCCATAATGAGCCCAGGCTGCCGGTCGGAGCTGTTTTCGTCCGGTCCCTTGGTGCGTATCTTGCGGATTTGTTCCGAGAGTCCGTATAGATCATTAAGACCCGTCGCGATTGTGGGGCTAGTCTAGATGTAGAGTGGGGGGTCTGAATAGTCCTCGCAGTCCCCAGAGTCTGCGTTGTCCCGTAGATCAGCCATGTGTGGTGTGTACCTATGTGAAAACTAAAAGTAAGGgaagagaaaagtacaaagaaaattgagtagccaaaaagagttacccccgaagtctgtgtgggacctgtcctctttacagctacacaacagatctaggggaaacccagccacgacgcgtttctgccttgctcggcttcatcaggtggcagagaggaaaaaaagtgcaAAAAGGAGCACTGGGTCGTAATGCGGTAAAAAAGCCGCATTATGGACCGGAAAaaatagggtgtgtgtgggtgtatgtgagtgGTAGAGTCTCGGTGGTCTGGAAGGTCTATGAAGGTCTGTAGGAGTATCAGCTGGAGTTTGGGTCCTGATGAGGTatctttttgggggggagggcgaGTCGTAGGAGTCCGGTCGTTCAGGTGAGATGCTTGTGGGGAGTGTAGAATATCAGCCGGTGTCTGGGTCCCAGTGAGGTGTCCCTTTAGGGGTTGGTATATAGTTGGGGTCCGGTAGATCCTTGAGGGGAGAGGTGGTCTGGGTAGAGTGCAGGCTTGGGTCTTTATCCAGTAGATCTGTGGGGAGAGGTTCGTCTTGGTAGAGTCCAGGCTGGGGTCTGTGTCCAGTaggtcagtggaggagaggaggagaggaggtcttcTGCAGGTTTCCAGCTTGAGTCTTGTATCCAGTAGAAGGCTTCTCTGGGGATCCGTGGATCCTAATGATGCTGAGACTGAGGGGTGCTCCTCTTTTTATGTGAAAAACTGGGGGTGTGGTTTAGGCCAGGGGTCCAATCATGAGATGGCACAAGGTGTGCATGCGGTGTGCACGTGAAGGCCTGTTGGAGTTTGGTCCAATG
>TU2551
tttgtgcccctgatgtaatggtgtaggggtgtagtcctccggtggttttggtcctatggagaccgtggaggggtgctgtctggtgggagagaaggtccattggtgtgggatgtttcccccgctgtgtagaagctttggagaaatgttcattaTGTGGCGTTTCCATAATGAGCCCAGGCTGCCGGTCGGAGCTGTTTTCGTCCGGTCCCTTGGTGCGTATCTTGCGGATTTGTTCCGAGAGTCCGTATAGATCATTAAGACCCGTCGCGATTGTGGGGCTAGTCTAGATGTAGAGTGGGGGGTCTGAATAGTCCTCGCAGTCCCCAGAGTCTGCGTTGTCCCGTAGATCAGCCATGTGTGGTGTGTACCTATGTGAAAACTAAAAGTAAGGgaagagaaaagtacaaagaaaattgagtagccaaaaagagttacccccgaagtctgtgtgggacctgtcctctttacagctacacaacagatctaggggaaacccagccacgacgcgtttctgccttgctcggcttcatcaggtggcagagaggaaaaaaagtgcaAAAAGGAGCACTGGGTCGTAATGCGGTAAAAAAGCCGCATTATGGACCGGAAAaaatagggtgtgtgtgggtgtatgtgagtgGTAGAGTCTCGGTGGTCTGGAAGGTCTATGAAGGTCTGTAGGAGTATCAGCTGGAGTTTGGGTCCTGATGAGGTatctttttgggggggagggcgaGTCGTAGGAGTCCGGTCGTTCAGGTGAGATGCTTGTGGGGAGTGTAGAATATCAGCCGGTGTCTGGGTCCCAGTGAGGTGTCCCTTTAGGGGTTGGTATATAGTTGGGGTCCGGTAGATCCTTGAGGGGAGAGGTGGTCTGGGTAGAGTGCAGGCTTGGGTCTTTATCCAGTAGATCTGTGGGGAGAGGTTCGTCTTGGTAGAGTCCAGGCTGGGGTCTGTGTCCAGTaggtcagtggaggagaggaggagaggaggtcttcTGCAGGTTTCCAGCTTGAGTCTTGTATCCAGTAGAAGGCTTCTCTGGGGATCCGTGGATCCTAATGATGCTGAGACTGAGGGGTGCTCCTCTTTTTATGTGAAAAACTGGGGGTGTGGTTTAGGCCAGGGGTCCAATCATGAGATGGCACAAGGTGTGCATGCGGTGTGCACGTGAAGGCCTGTTGGAGTTTGGTCCAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2550 False 1199 lncRNA 0.51 2 2467819 2471281
TU2551 True 1199 lncRNA 0.47 2 2467819 2471281
Loading

Neighbor

gene id symbol gene type direction distance location
tp63 NA coding downstream 80514 2259231 ~ 2387305 (-)
atp1b1a at233 coding downstream 337000 2100172 ~ 2130819 (-)
zgc:172121 mmum coding downstream 483484 1977603 ~ 1984335 (-)
si:ch211-201h21.5 LOC106574205 coding downstream 494457 1969519 ~ 1973362 (-)
LOC100135976 LOC100135976 coding downstream 646759 1782327 ~ 1821060 (-)
LOC110531934 LOC106574222 coding upstream 145302 2616583 ~ 2618583 (-)
LOC110523943 LOC106573992 coding upstream 165381 2636662 ~ 2815077 (-)
LOC118966169 NA coding upstream 531028 3002309 ~ 3003994 (-)
LOC110518923 LOC105011323 coding upstream 551329 3022610 ~ 3524283 (-)
LOC118964935 NA coding upstream 819903 3291184 ~ 3294574 (-)
G1945 NA non-coding downstream 1830 2465423 ~ 2465989 (-)
G1944 NA non-coding downstream 9504 2457581 ~ 2458315 (-)
G1935 NA non-coding downstream 12124 2455479 ~ 2455695 (-)
G1933 NA non-coding downstream 20702 2446886 ~ 2447117 (-)
G1910 NA non-coding downstream 54869 2412695 ~ 2412950 (-)
G1955 NA non-coding upstream 63281 2534562 ~ 2534845 (-)
G1956 NA non-coding upstream 63602 2534883 ~ 2535131 (-)
G2115 LOC106574099 non-coding upstream 107072 2578353 ~ 2579757 (-)
G2110 NA non-coding upstream 153716 2624997 ~ 2698384 (-)
G2171 NA non-coding upstream 223874 2695155 ~ 2696055 (-)
G1788 NA other downstream 370695 2092410 ~ 2097715 (-)
G1651 LOC106574119 other downstream 707389 1753245 ~ 1760430 (-)
G1355 NA other downstream 1491720 970185 ~ 976099 (-)
plcxd1 LOC106574112 other downstream 1785923 631974 ~ 681917 (-)
sft2d2a sft2b other downstream 2224396 237111 ~ 243619 (-)
G1954 NA other upstream 62749 2534030 ~ 2534513 (-)
G2192 NA other upstream 271606 2742887 ~ 2743574 (-)
G2605 NA other upstream 507334 2978615 ~ 2978916 (-)
G2730 NA other upstream 868432 3339713 ~ 3341868 (-)
G2749 NA other upstream 914025 3385306 ~ 3388215 (-)

Expression

G1946 Expression in all Baseline Samples

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G1946 Expression in each Bioproject

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G1946 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network