G2004 (LOC106574222)


Basic Information

Item Value
gene id G2004
gene name LOC106574222
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 2616569 ~ 2618562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2612
TTGTAGTCTGGATGTCAACCTCAGCATGTTGGAGGGAAACCAATTTTATTCAGATCAATTCATTACAGTAGATTATTGATTTATCATTGATATAATTGTCAACTATTATTTACAAAAACATCTTAAATTCAGTGAACATATTCAGTGAACATATACTTATATTTATAACAATAAACTATTACTGTATATCAAGTGTTTAATTTCTACATTAAATTgacattattaaaaaaaaattgtgaggCTGGAGCAGGTTTTAAAGAGTCAGCGAGGATGGAGTGAGGCTGGAGCAGGTTTTAAAGAGTCAGGGAGGATGGAGTGAGGCTGGAGCAGGTTTTAAAGAGTCAGGGAGGATGGAGTGAGGCTGGAGCAGGTTTTATAGAGTCAGCGAGGATGGGGTGAGGCTTGAGCAGGTTGTATAGCGTCAGGGAGGATGGGGTGAGGCTGGAGCAGGTTTTATAGAGTCAGCGAGGATGGGGTGAGGCTGGAGCAGGTTTTAAAGAGTCAGGGAGGATGGAGTGAGGCTGGAGCAGGTTTTATAGCATCAGGGAGGATGGGGTGAGGCTAGAGCAGGTTTTATAGAGTCAGGGAGGATGGGGTGAGGCTGGAGCAGGTTTTATAGAGTCGGGGAGGATGGGGTGTGGATGTAGCAGGTTTACATCCAAACTATTTCCTCTGAAtctgacataaaaaaaaatgtattgtgaaaGTTGCTCCAGGTATTCCCTATGGGTTTGACATAAAAAGCAGTCAGCCAGAGTGCCAGGGCTGGTTCTTAGGCTGTTTAACTATTTTCAAGAGAGGCAGAACCATCCATAAACCTTCCAGAATAGaatacccctcccctcccctcccctctccttcctttcacCTCCCCTCGCCTCAAACATACTCTGGAGGTTTCCTGGAGGAATGATCTGTACTCCGGACCTCGTATCTCTTCGGCGATTGTGCCTGGGGTGCTCCGTCTGCCTGGGGTCCCCTGGAATGGTCAGCCTGGGGTGCTCCGTAATAGTCTGCCTGGGGTCCCCTGGAATGGTCTGCCAGAGGCCCCAGACAGGATACAAACAGGAGTAATCCAGCCACCAGCAGGAGGAACCCCCCCACCCAGCCGCAAAACAGGGCATCACCAAACTCCCAGCGTGGCACCACCTCCGGCACCGACTCATCAAAATAACGCATTACCGTCAAGTGGGCGACGTAGGAAACAGGGACCAGAGAAAGCACCCCAGCTACCATCCCCAGCACCCCTCCTGCCACCTTCATAATCCTCTTGGCCCTGCAGCCCTCCAGCCCCTGGCTGAAGCTGTTGACCAGGTGAAGACCAGGGATAGCCAGCAGCAGGCCCAGCAGGCCCACAGCCAGGGAGATACACATGAAGACACGGGCCACCTTGATGTCCTGAGGCAGGCCCAGCAGGCTGTCGTAGGGTCGACACTCCATCCCCCCCATGTCCTGGACCACGCAGGTCTCCCAGAGACCCAGCTCATAGCTCTCTGTGAGCAAGAGGTCTGTGGACAGGGTCAGCCACTGTGGCATCAGAGTGGTGGCCAGAGCACACAGCCAGGCTGCCATGTACACTACCATCCCCAGCAGCTCGAGAGTGGAGGCACACAGGTCCATGGTTTACCCGACCCTCTCTGGCCTCGCTCCGTTGACCCTCAAGAGCTCTTCTCTGGCTTCTGGAGAGGTTCTGGAGAGGTCTGGCAGCTCCTGATGTCCAGTAGGAACAGAGAGGCTTCTCACAGCACCTGCTAATTACTGCTGAATACTGTTCTGTTCACAGGCAGGCGGAGAGCTCCTTCACTAACAGTCCCACtccacagaaacacacatcatCTGGCTGGAGGCTGGGAGGAAAGGGGCTCTCTGG
>TU2620
TTGTAGTCTGGATGTCAACCTCAGCATGTTGGAGGGAAACCAATTTTATTCAGATCAATTCATTACAGTAGATTATTGATTTATCATTGATATAATTGTCAACTATTATTTACAAAAACATCTTAAATTCAGTGAACATATTCAGTGAACATATACTTATATTTATAACAATAAACTATTACTGTATATCAAGTGTTTAATTTCTACATTAAATTgacattattaaaaaaaaattgtgaggCTGGAGCAGGTTTTAAAGAGTCAGCGAGGATGGAGTGAGGCTGGAGCAGGTTTTAAAGAGTCAGGGAGGATGGAGTGAGGCTGGAGCAGGTTTTATAGCATCAGGGAGGATGGGGTGAGGCTAGAGCAGGTTTTATAGAGTCAGGGAGGATGGGGTGAGGCTGGAGCAGGTTTTATAGAGTCGGGGAGGATGGGGTGTGGATGTAGCAGGTTTACATCCAAACTATTTCCTCTGAAtctgacataaaaaaaaatgtattgtgaaaGTTGCTCCAGGTATTCCCTATGGGTTTGACATAAAAAGCAGTCAGCCAGAGTGCCAGGGCTGGTTCTTAGGCTGTTTAACTATTTTCAAGAGAGGCAGAACCATCCATAAACCTTCCAGAATAGaatacccctcccctcccctcccctctccttcctttcacCTCCCCTCGCCTCAAACATACTCTGGAGGTTTCCTGGAGGAATGATCTGTACTCCGGACCTCGTATCTCTTCGGCGATTGTGCCTGGGGTGCTCCGTCTGCCTGGGGTCCCCTGGAATGGTCAGCCTGGGGTGCTCCGTAATAGTCTGCCTGGGGTCCCCTGGAATGGTCTGCCAGAGGCCCCAGACAGGATACAAACAGGAGTAATCCAGCCACCAGCAGGAGGAACCCCCCCACCCAGCCGCAAAACAGGGCATCACCAAACTCCCAGCGTGGCACCACCTCCGGCACCGACTCATCAAAATAACGCATTACCGTCAAGTGGGCGACGTAGGAAACAGGGACCAGAGAAAGCACCCCAGCTACCATCCCCAGCACCCCTCCTGCCACCTTCATAATCCTCTTGGCCCTGCAGCCCTCCAGCCCCTGGCTGAAGCTGTTGACCAGGTGAAGACCAGGGATAGCCAGCAGCAGGCCCAGCAGGCCCACAGCCAGGGAGATACACATGAAGACACGGGCCACCTTGATGTCCTGAGGCAGGCCCAGCAGGCTGTCGTAGGGTCGACACTCCATCCCCCCCATGTCCTGGACCACGCAGGTCTCCCAGAGACCCAGCTCATAGCTCTCTGTGAGCAAGAGGTCTGTGGACAGGGTCAGCCACTGTGGCATCAGAGTGGTGGCCAGAGCACACAGCCAGGCTGCCATGTACACTACCATCCCCAGCAGCTCGAGAGTGGAGGCACACAGGTCCATGGTTTACCCGACCCTCTCTGGCCTCGCTCCGTTGACCCTCAAGAGCTCTTCTCTGGCTTCTGGAGAGGTTCTGGAGAGGTCTGGCAGCTCCTGATGTCCAGTAGGAACAGAGAGGCTTCTCACAGCACCTGCTAATTACTGCTGAATACTGTTCTGTTCACAGGCAGGCGGAGAGCTCCTTCACTAACAGTCCCACtccacagaaacacacatcatCTGGCTGGAGGCTGGGAGGAAAGGGGCTCTCTGGCACATggccctcctcttccctcccctacCTCCTGCTGAGGCTGC
>TU2621
TTGTAGTCTGGATGTCAACCTCAGCATGTTGGAGGGAAACCAATTTTATTCAGATCAATTCATTACAGTAGATTATTGATTTATCATTGATATAATTGTCAACTATTATTTACAAAAACATCTTAAATTCAGTGAACATATTCAGTGAACATATACTTATATTTATAACAATAAACTATTACTGTATATCAAGTGTTTAATTTCTACATTAAATTgacattattaaaaaaaaattgtgaggCTGGAGCAGGTTTTAAAGAGTCAGCGAGGATGGAGTGAGGCTGGAGCAGGTTTTAAAGAGTCAGGGAGGATGGAGTGAGGCTGGAGCAGGTTTTATAGCATCAGGGAGGATGGGGTGAGGCTAGAGCAGGTTTTATAGAGTCAGGGAGGATGGGGTGAGGCTGGAGCAGGTTTTATAGAGTCGGGGAGGATGGGGTGTGGATGTAGCAGGTTTACATCCAAACTATTTCCTCTGAAtctgacataaaaaaaaatgtattgtgaaaGTTGCTCCAGGTATTCCCTATGGGTTTGACATAAAAAGCAGTCAGCCAGAGTGCCAGGGCTGGTTCTTAGGCTGTTTAACTATTTTCAAGAGAGGCAGAACCATCCATAAACCTTCCAGAATAGaatacccctcccctcccctcccctctccttcctttcacCTCCCCTCGCCTCAAACATACTCTGGAGGTTTCCTGGAGGAATGATCTGTACTCCGGACCTCGTATCTCTTCGGCGATTGTGCCTGGGGTGCTCCGTCTGCCTGGGGTCCCCTGGAATGGTCAGCCTGGGGTGCTCCGTAATAGTCTGCCTGGGGTCCCCTGGAATGGTCTGCCAGAGGCCCCAGACAGGATACAAACAGGAGTAATCCAGCCACCAGCAGGAGGAACCCCCCCACCCAGCCGCAAAACAGGGCATCACCAAACTCCCAGCGTGGCACCACCTCCGGCACCGACTCATCAAAATAACGCATTACCGTCAAGTGGGCGACGTAGGAAACAGGGACCAGAGAAAGCACCCCAGCTACCATCCCCAGCACCCCTCCTGCCACCTTCATAATCCTCTTGGCCCTGCAGCCCTCCAGCCCCTGGCTGAAGCTGTTGACCAGGTGAAGACCAGGGATAGCCAGCAGCAGGCCCAGCAGGCCCACAGCCAGGGAGATACACATGAAGACACGGGCCACCTTGATGTCCTGAGGCAGGCCCAGCAGGCTGTCGTAGGGTCGACACTCCATCCCCCCCATGTCCTGGACCACGCAGGTCTCCCAGAGACCCAGCTCATAGCTCTCTGTGAGCAAGAGGTCTGTGGACAGGGTCAGCCACTGTGGCATCAGAGTGGTGGCCAGAGCACACAGCCAGGCTGCCATGTACACTACCATCCCCAGCAGCTCGAGAGTGGAGGCACACAGGTCCATGGTTTACCCGACCCTCTCTGGCCTCGCTCCGTTGACCCTCAAGAGCTCTTCTCTGGCTTCTGGAGAGGTTCTGGAGAGGTCTGGCAGCTCCTGATGTCCAGTAGGAACAGAGAGGCTTCTCACAGCACCTGCTAATTACTGCTGAATACTGTTCTGTTCACAGGCAGGCGGAGAGCTCCTTCACTAACAGTCCCACtccacagaaacacacatcatCTGGCTGGAGGCTGGGAGGAAAGGGGCTCTCTGGCACATggccctcctcttccctcccctacCTCCTGCTGAGGCTGC
>TU2625
TTGTAGTCTGGATGTCAACCTCAGCATGTTGGAGGGAAACCAATTTTATTCAGATCAATTCATTACAGTAGATTATTGATTTATCATTGATATAATTGTCAACTATTATTTACAAAAACATCTTAAATTCAGTGAACATATTCAGTGAACATATACTTATATTTATAACAATAAACTATTACTGTATATCAAGTGTTTAATTTCTACATTAAATTgacattattaaaaaaaaattgtgaggCTGGAGCAGGTTTTAAAGAGTCAGCGAGGATGGAGTGAGGCTGGAGCAGGTTTTAAAGAGTCAGGGAGGATGGAGTGAGGCTGGAGCAGGTTTTATAGAGTCAGCGAGGATGGGGTGAGGCTTGAGCAGGTTGTATAGCGTCAGGGAGGATGGGGTGAGGCTGGAGCAGGTTTTATAGAGTCAGCGAGGATGGGGTGAGGCTGGAGCAGGTTTTAAAGAGTCAGGGAGGATGGAGTGAGGCTGGAGCAGGTTTTATAGCATCAGGGAGGATGGGGTGAGGCTAGAGCAGGTTTTATAGAGTCGGGGAGGATGGGGTGTGGATGTAGCAGGTTTACATCCAAACTATTTCCTCTGAAtctgacataaaaaaaaatgtattgtgaaaGTTGCTCCAGGTATTCCCTATGGGTTTGACATAAAAAGCAGTCAGCCAGAGTGCCAGGGCTGGTTCTTAGGCTGTTTAACTATTTTCAAGAGAGGCAGAACCATCCATAAACCTTCCAGAATAGaatacccctcccctcccctcccctctccttcctttcacCTCCCCTCGCCTCAAACATACTCTGGAGGTTTCCTGGAGGAATGATCTGTACTCCGGACCTCGTATCTCTTCGGCGATTGTGCCTGGGGTGCTCCGTCTGCCTGGGGTCCCCTGGAATGGTCAGCCTGGGGTGCTCCGTAATAGTCTGCCTGGGGTCCCCTGGAATGGTCTGCCAGAGGCCCCAGACAGGATACAAACAGGAGTAATCCAGCCACCAGCAGGAGGAACCCCCCCACCCAGCCGCAAAACAGGGCATCACCAAACTCCCAGCGTGGCACCACCTCCGGCACCGACTCATCAAAATAACGCATTACCGTCAAGTGGGCGACGTAGGAAACAGGGACCAGAGAAAGCACCCCAGCTACCATCCCCAGCACCCCTCCTGCCACCTTCATAATCCTCTTGGCCCTGCAGCCCTCCAGCCCCTGGCTGAAGCTGTTGACCAGGTGAAGACCAGGGATAGCCAGCAGCAGGCCCAGCAGGCCCACAGCCAGGGAGATACACATGAAGACACGGGCCACCTTGATGTCCTGAGGCAGGCCCAGCAGGCTGTCGTAGGGTCGACACTCCATCCCCCCCATGTCCTGGACCACGCAGGTCTCCCAGAGACCCAGCTCATAGCTCTCTGTGAGCAAGAGGTCTGTGGACAGGGTCAGCCACTGTGGCATCAGAGTGGTGGCCAGAGCACACAGCCAGGCTGCCATGTACACTACCATCCCCAGCAGCTCGAGAGTGGAGGCACACAGGTCCATGGTTTACCCGACCCTCTCTGGCCTCGCTCCGTTGACCCTCAAGAGCTCTTCTCTGGCTTCTGGAGAGGTTCTGGAGAGGTCTGGCAGCTCCTGATGTCCAGTAGGAACAGAGAGGCTTCTCACAGCACCTGCTAATTACTGCTGAATACTGTTCTGTTCACAGGCAGGCGGAGAGCTCCTTCACTAACAGTCCCACtccacagaaacacacatcatCTGGCTGGAGGCTGGGAGGAAAGGGGCTCTCTGGCACATggccctcctcttccctcccctacCTCCTGCTGAGGCTGC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2612 False 1870 lncRNA 0.50 3 2616569 2618518
TU2620 False 1714 lncRNA 0.34 2 2616569 2618562
TU2621 False 1714 lncRNA 0.41 2 2616569 2618562
TU2625 True 1834 lncRNA 0.35 5 2616569 2618562

Neighbor

gene id symbol gene type direction distance location
LOC110531937 LOC106574099 coding upstream 36261 2538334 ~ 2580308 (+)
zbtb11 LOC106560622 coding upstream 358244 2212135 ~ 2258325 (+)
dpt LOC106574207 coding upstream 423674 2176672 ~ 2192895 (+)
nme7 at233 coding upstream 517885 1984326 ~ 2101039 (+)
tmem131 LOC102783117 coding upstream 648993 1859377 ~ 1967576 (+)
LOC118966170 NA coding downstream 780864 3399426 ~ 3400148 (+)
bcl6aa LOC106574104 coding downstream 984101 3602663 ~ 3624582 (+)
LOC118965227 NA coding downstream 1204574 3822517 ~ 3826226 (+)
trnap-cgg NA coding downstream 1229061 3847623 ~ 3847694 (+)
trnap-ugg NA coding downstream 1229326 3847888 ~ 3847959 (+)
G1961 NA non-coding upstream 78815 2537525 ~ 2537754 (+)
G1959 NA non-coding upstream 79525 2536747 ~ 2537044 (+)
G1958 NA non-coding upstream 80108 2536145 ~ 2536461 (+)
G1957 NA non-coding upstream 80774 2535583 ~ 2535795 (+)
G1936 NA non-coding upstream 82902 2456072 ~ 2533667 (+)
G2018 NA non-coding downstream 29465 2648027 ~ 2656615 (+)
G2084 NA non-coding downstream 164205 2782767 ~ 2784184 (+)
G2068 NA non-coding downstream 168256 2786818 ~ 2798145 (+)
G2223 NA non-coding downstream 197728 2816290 ~ 2816626 (+)
G2224 NA non-coding downstream 205658 2824220 ~ 2824983 (+)
G998 LOC106576565 other upstream 353004 2258883 ~ 2305334 (+)
G961 NA other upstream 536966 2078898 ~ 2079603 (+)
G583 NA other upstream 1606362 1003783 ~ 1010207 (+)
G166 NA other upstream 2296595 318047 ~ 319974 (+)
G51 NA other upstream 2486306 120466 ~ 130263 (+)
G2016 NA other downstream 25773 2644335 ~ 2645169 (+)
G2343 NA other downstream 596135 3214697 ~ 3216234 (+)
G2464 NA other downstream 884707 3503269 ~ 3503581 (+)
G3176 NA other downstream 1556761 4175323 ~ 4178073 (+)
G3234 NA other downstream 1780342 4398904 ~ 4399444 (+)

Expression


Co-expression Network