G2707


Basic Information

Item Value
gene id G2707
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 3272092 ~ 3275037 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU3520
TGTactaaaacacacatcacaacatcatgtctgtagtggtgtactgaaacacacatcacaacatcacgtctgtactgaaacacacatcacaacatcacgtctgtactgaaacacacatcacaacatcacgtctgtactgaaacacacatcacaacatcatgtctgtactgaaacacacatcacaacatcatgtATGTAgtgaaacacacatcacaacatcatgtatgtactgaaacacacatcac
>TU3521
cacaacatcatgtctgtagtggtgtactgaaacacacatcacaacattacgtctgtactgaaacacacatcacaacatcacgtctgtactgaaacacacatcacaacatcacgtctgtactgaaacacacatcacaacatcacgtctgtactgaaacacacatcacaacatcacgtctgtagtggtgtactgaaacacacatcacaacatcatgtctgtagtgaaacacacatcacaacatcacgtctgtactgaaacacacatcacaacatcacgTCTGTAGTGGTGTActgaaacacacaacacaacatcatgtctgtagtgaaacacacatcacaacatcacgTCTGTACTGAAACACACATCacaacatcatgtctgtactgaaacacacatcacaacatcacgTCTGTAGTGGTGTactgaaacacacatcacaacatcacgtctgtactgaaacacacatcacaacatcacgtctgtactgaaacacacatcacaacatcatgtctgtactgaaacacacatcacaacatcatgtATGTAgtgaaacacacatcacaacatcatgtatgtactgaaacacacatcac
>TU3525
cacaacatcatgtctgtagtggtgtactgaaacacacatcacaacattacgtctgtactgaaacacacatcacaacatcacgtctgtactgaaacacacatcacaacatcacgtctgtactgaaacacacatcacaacatcacgtctgtactgaaacacacatcacaacatcacgtctgtactgaaacacacatcacaacatcacgtctgtagtggtgtactgaaacacacatcacaacatcacgtctgtactgaaacacacatcacaacatcatgtctgtagtggtgtactgaaacacacaacacaacatcatgtctgtagtgaaacacacatcacaacatcatgtctgtagtgaaacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3520 False 245 lncRNA 0.45 2 3272092 3274036
TU3521 False 593 lncRNA 0.41 5 3272092 3275037
TU3525 True 363 lncRNA 0.44 3 3274092 3275037

Neighbor

gene id symbol gene type direction distance location
LOC118966169 NA coding downstream 268098 3002309 ~ 3003994 (-)
LOC110523943 LOC106573992 coding downstream 457015 2636662 ~ 2815077 (-)
LOC110531934 LOC106574222 coding downstream 653509 2616583 ~ 2618583 (-)
LOC118964912 NA coding downstream 794902 2462283 ~ 2477190 (-)
tp63 NA coding downstream 884787 2259231 ~ 2387305 (-)
LOC118964935 NA coding upstream 16147 3291184 ~ 3294574 (-)
smx5 LSM2 coding upstream 357301 3632307 ~ 3640949 (-)
inpp5d inpp5d coding upstream 372800 3647837 ~ 3700485 (-)
LOC118965007 NA coding upstream 433012 3708049 ~ 3720457 (-)
amotl2a LOC106591579 coding upstream 477389 3752426 ~ 3766194 (-)
G2705 NA non-coding downstream 6361 3265363 ~ 3265731 (-)
G2683 NA non-coding downstream 61491 3208531 ~ 3210601 (-)
G2676 NA non-coding downstream 91538 3177893 ~ 3180554 (-)
G2650 NA non-coding downstream 174107 3097117 ~ 3097985 (-)
G2647 NA non-coding downstream 176949 3094874 ~ 3095143 (-)
G2718 NA non-coding upstream 19746 3294783 ~ 3295721 (-)
G2723 NA non-coding upstream 34115 3309152 ~ 3309572 (-)
G2728 NA non-coding upstream 42760 3317797 ~ 3320269 (-)
G2729 NA non-coding upstream 62358 3337395 ~ 3337805 (-)
G2605 NA other downstream 293176 2978615 ~ 2978916 (-)
G2192 NA other downstream 528518 2742887 ~ 2743574 (-)
G1954 NA other downstream 737579 2534030 ~ 2534513 (-)
G1788 NA other downstream 1174968 2092410 ~ 2097715 (-)
G1651 LOC106574119 other downstream 1511662 1753245 ~ 1760430 (-)
G2730 NA other upstream 64676 3339713 ~ 3341868 (-)
G2749 NA other upstream 110269 3385306 ~ 3388215 (-)
G2772 NA other upstream 167301 3442338 ~ 3444099 (-)
LOC110524598 LOC106574123 other upstream 807126 4040460 ~ 4121533 (-)

Expression


Co-expression Network