G2718


Basic Information

Item Value
gene id G2718
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 3294783 ~ 3295721 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU3540
attcttatttacaatgacggcctacaccggccaaactcgaacgacgctgggccacttgtgctccgccctatggaactcgcgatcacggccggttgtgatacagcctggattcgaaccagggtgtatgtagtgacgcctcaagcactgagatgcagtgcctttagactGCTGAGCCATTCGGGAGCCATGACCTCTTCTCATTAAATattaggaccaacactttacatgttgcatttatatttttgttcagagtaCAGTACtaatcaaacgtttggacacacgctAGTCCTTCGTACGAGACTTCAGTTGGAGTGCTGCTGTGCTCACTGTCActtgaaagagaaagaaagaaagagagaaagaaagagagaaagaaagagagagaaagaaagagagaaagaaagaaagagagaaagaaagaaagaaagaaagagtaacTGAAAGAGGGAGTGAAAACAGATCTCGATAGGATACAGttacacagacagaacaggggcattctctctgtctgtataccACGTTACTGCACTTTATCTGCAAATGTGAGATAGTTCAAAACAGCTGGAGGTCTCGCCACATTTTGTCGAGGAGACATCTTTAATCATATTTAATTTGCCTTATCTGGAACTATTTTTAAGTGTGAGAGAGTGCTGATACCCTCAGCATTATGACTGGTTGGTGTcggaggctgaggagaggagtggagaggaggagaggagatgaaagcagagg
>TU3541
attcttatttacaatgacggcctacaccggccaaactcgaacgacgctgggccacttgtgctccgccctatggaactcgcgatcacggccggttgtgatacagcctggattcgaaccagggtgtatgtagtgacgcctcaagcactgagatgcagtgcctttagactGCTGAGCCATTCGGGAGCCATGACCTCTTCTCATTAAATattaggaccaacactttacatgttgcatttatatttttgttcagagtaCAGTACtaatcaaacgtttggacacacgctAGTCCTTCGTACGAGACTTCAGTTGGAGTGCTGCTGTGCTCACTGTCActtgaaagagaaagaaagaaagagagaaagaaagagaaagaaagagagaaagaaagagagagaaagagagaaagaaagagagaaagaaagagagagagagagaaagaaagagagaaagaaagaaagaaagaaagagtaacTGAAAGAGGGAGTGAAAACAGATCTCGATAGGATACAGttacacagacagaacaggggcattctctctgtctgtataccACGTTACTGCACTTTATCTGCAAATGTGAGATAGTTCAAAACAGCTGGAGGTCTCGCCACATTTTGTCGAGGAGACATCTTTAATCATATTTAATTTGCCTTATCTGGAACTATTTTTAAGTGTGAGAGAGTGCTGATACCCTCAGCATTATGACTGGTTGGTGTcggaggctgaggagaggagtggagaggaggagaggagatgaaagcagagg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3540 False 732 lncRNA 0.44 4 3294783 3295721
TU3541 True 766 lncRNA 0.48 3 3294783 3295721

Neighbor

gene id symbol gene type direction distance location
LOC118964935 NA coding downstream 209 3291184 ~ 3294574 (-)
LOC118966169 NA coding downstream 290789 3002309 ~ 3003994 (-)
LOC110523943 LOC106573992 coding downstream 479706 2636662 ~ 2815077 (-)
LOC110531934 LOC106574222 coding downstream 676200 2616583 ~ 2618583 (-)
LOC118964912 NA coding downstream 817593 2462283 ~ 2477190 (-)
smx5 LSM2 coding upstream 336617 3632307 ~ 3640949 (-)
inpp5d inpp5d coding upstream 352116 3647837 ~ 3700485 (-)
LOC118965007 NA coding upstream 412328 3708049 ~ 3720457 (-)
amotl2a LOC106591579 coding upstream 456705 3752426 ~ 3766194 (-)
cep63 cep63 coding upstream 529512 3825233 ~ 3847645 (-)
G2707 NA non-coding downstream 19746 3272092 ~ 3275037 (-)
G2705 NA non-coding downstream 29052 3265363 ~ 3265731 (-)
G2683 NA non-coding downstream 84182 3208531 ~ 3210601 (-)
G2676 NA non-coding downstream 114229 3177893 ~ 3180554 (-)
G2723 NA non-coding upstream 13431 3309152 ~ 3309572 (-)
G2728 NA non-coding upstream 22076 3317797 ~ 3320269 (-)
G2729 NA non-coding upstream 41674 3337395 ~ 3337805 (-)
G2731 NA non-coding upstream 44642 3340363 ~ 3340962 (-)
G2738 NA non-coding upstream 61313 3357034 ~ 3359320 (-)
G2605 NA other downstream 315867 2978615 ~ 2978916 (-)
G2192 NA other downstream 551209 2742887 ~ 2743574 (-)
G1954 NA other downstream 760270 2534030 ~ 2534513 (-)
G1788 NA other downstream 1197659 2092410 ~ 2097715 (-)
G1651 LOC106574119 other downstream 1534353 1753245 ~ 1760430 (-)
G2730 NA other upstream 43992 3339713 ~ 3341868 (-)
G2749 NA other upstream 89585 3385306 ~ 3388215 (-)
G2772 NA other upstream 146617 3442338 ~ 3444099 (-)
LOC110524598 LOC106574123 other upstream 786442 4040460 ~ 4121533 (-)

Expression


Co-expression Network