XLOC_019875 (fundc2)


Basic Information

Item Value
gene id XLOC_019875
gene name fundc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 44557791 ~ 44565862 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039096
AGAGGTTATGATTGTGTGACTCCTAACATCATCACCATTGAAACACGATTTTATATTCTAAATTAGGAATCGTAATTTAGTAACAgatattttaacaattattagtctacttttatttataattgttaatgctacatcaatattttaaaatcaatcaaccatctttttttaaatgcacaggcAAATAATTATGAAATCGCTTAATTTAAAAGCATTGTGACTTTTTTAATTACTGTGTAATAAAGCACACATAGATATACATAAACACAAGGTAATAAATAAGCAGGAACTGCTCAGCTTTCTATTTCTCCACTGAAATGTCTTCAGTTTTTCTCAGGTCTTTGCCTCTTCACTGATGACTGAAACCTCCAGGATATCGACTTCAGTATTCAGATAATAACAACCTATATTTAACGAGTCTTTATTTGATAATAATTACCATATGACATACaacaatattaacattttactcatacCTTTTACTCTTTGTGCGCTCAGTAACGTTGTGCTTATTAAAGATAAAGTGTGGTTAATATTAAATCTGTTAagcaaatattatatatacattcaccCTTTCAGCAGCGTCACCGAACATGGTATGATCCATTTCAGGGGTGGCCATATTTAAAACATCCACCAAAGCCATAcaaatctctctctttctgtaaATCTCCCAAtatttacatacacaaacacgcatATTTAAGTCTTTCGACTCATATTTATGGTTTCTttcgttttcttttcttttatctcATTTCTCAAATAGAAAGATCTGAATGCGTCACGTGACGCGCAGGATGCGCAGCACTCTATCGTCCGGACGGAAAACGAAAGAAAATGTCTGAGAAGGAAAGCTTCGACGTCCTGGAACTGGCAGAGAAAGTCAAGGATCAGAACAAAAGGTGGTGGAACAAAATGTTTGGGAAAAACAGCTCCGGACCTGCGGCTGAGAAATACTCTGTGGCCACACAGCTGGCCATTGGAGGAGTGAGCGGCTGGTGTGCAGGATACCTGTTTCAGAAAGTTGGGAAAGTTGCCGCATCGGCTGTTGGCGGAGGTTTCTTTTTGCTCCAGATCGCACATCACACGGGCTACATTAAAATAGACTGGAAAAGAGTCGAGCACGACGTGAACAAGGCCAAGAAGCAACTGAAGCTGAACTCAGACAAGCCCCCGAAAGAAGTCACTACTAAATTTAATGAGgtgcagctgtttgtcaaGAACAACATCGTCCTGACAGGAGGTTTCGCAGGAGGGTTTCTGCTCGGTTTGGCCTCATAGGAGCCTTTCTGATCACCCCGAGGACGTCATTAACACTTTATACAGCAGCTTGTATTTAACTCAGCACTGCTTTATCAGTTAAACTTCTCATTAATCTGTGTAGGCATGATGCAATGTGTccgtaatgaacatttatatattgaagaatgtatAGTTCAGTGGTTTGATGTGCATTATTTTAAGCCCCTGTTACATTGAATattatttttgctgtattttttggTACATGACTTGAATTCAGACATGTAAATATTTGcaggcctttaaaaaaaaaaaacgacatccAAACTTGCAGAATTATATCATCAAGCTCAAATATTCACAtgcatttttttgtaataaatctgGATATTATTTCCAAAATCAAGGGTTTAAAAGGTTGTGAATCAGGATTTAAGCAACTTTGATTGTGTTCTTGATATTTTATATATCATCTATTTTTTCTAAATTGCAGCTTATGCTTATGATATTTGACTTTCTTTTATTTCCTATTATGTGATCTGATTATGAATTGTATTATTACAAACCCCTGCTGTATTTTCCAACTTGAGGAAATCTGAACTTGTCCAAATGATGTTCATTGTTTTACgtcaataaaataaactttaaacgtGCCATTCACTATGATAGATGATATAAATAATACATGCGGAGTCGAGCATGTTACTTCGGAGTTGCATTAATTGCTAGTTATtgcaattgtatttaaatgacttcTCTAATTTGTCTATAAAATAACCTAGTCACTCAATAAGTAATTGAATTATGTGATTAAATACTAATTACATGAATCTCAATGCATAAGCaatataaactaaactaaatttttAAAACTATGTTTAAGTAAAACGGTACcttgtattttactttaaagaaataACAAtcataatgtaaacaaaatatgCATCAAAGCGTTTCAATGTATGGACACCATTTTACACATATACTGCATGCATTTAAATCGGATTGTTTATTAAGCATGTGTAGCTGTCGGACGAGTAAAACGTTTCGCtgaaattttgatttaaaaataattaagttaatatgcaaaatatcagttagaaatatattttacaattactctgcttctctgaatttaCACCTTATAATATATTGTCGTGAACTAAtttctctatttttttattaagcatATTCTCAGTTCTCttgattagtttatttaatattctgtaGTTTAAAAATAGAATATATATTACTCTGCTTGTTTGAattaatgtacagtatttaaggcaagtatattataaataattgtaattaagtta
>TCONS_00039097
AAAACATCCACCAAAGCCATAcaaatctctctctttctAAAGATCTGAATGCGTCACGTGACGCGCAGGATGCGCAGCACTCTATCGTCCGGACGGAAAACGAAAGAAAATGTCTGAGAAGGAAAGCTTCGACGTCCTGGAACTGGCAGAGAAAGTCAAGGATCAGAACAAAAGGTGGTGGAACAAAATGTTTGGGAAAAACAGCTCCGGACCTGCGGCTGAGAAATACTCTGTGGCCACACAGCTGGCCATTGGAGGAGTGAGCGGCTGGTGTGCAGGATACCTGTTTCAGAAAGTTGGGAAAGTTGCCGCATCGGCTGTTGGCGGAGGTTTCTTTTTGCTCCAGATCGCACATCACACGGGCTACATTAAAATAGACTGGAAAAGAGTCGAGCACGACGTGAACAAGGCCAAGAAGCAACTGAAGCTGAACTCAGACAAGCCCCCGAAAGAAGTCACTACTAAATTTAATGAGgtgcagctgtttgtcaaGAACAACATCGTCCTGACAGGAGGTTTCGCAGGAGGGTTTCTGCTCGGTTTGGCCTCATAGGAGCCTTTCTGATCACCCCGAGGACGTCATTAACACTTTATACAGCAGCTTGTATTTAACTCAGCACTGCTTTATCAGTTAAACTTCTCATTAATCTGTGTAGGCATGATGCAATGTGTccgtaatgaacatttatatattgaagaatgtatAGTTCAGTGGTTTGATGTGCATTATTTTAAGCCCCTGTTACATTGAATattatttttgctgtattttttggTACATGACTTGAATTCAGACATGTAAATATTTGcaggcctttaaaaaaaaaaaacgacatccAAACTTGCAGAATTATATCATCAAGCTCAAATATTCACAtgcatttttttgtaataaatctgGATATTATTTCCAAAATCAAGGGTTTAAAAGGTTGTGAATCAGGATTTAAGCAACTTTGATTGTGTTCTTGATATTTTATATATCATCTATTTTTTCTAAATTGCAGCTTATGCTTATGATATTTGACTTTCTTTTATTTCCTATTATGTGATCTGATTATGAATTGTATTATTACAAACCCCTGCTGTATTTTCCAACTTGAGGAAATCTGAACTTGTCCAAATGATGTTCATTGTTTTACgtcaataaaataaactttaaacgtGCCATTCAC

Function

symbol description
fundc2 Predicted to be involved in autophagy of mitochondrion. Predicted to be integral component of mitochondrial outer membrane. Orthologous to human FUNDC2 (FUN14 domain containing 2).

GO:

id name namespace
GO:0000422 autophagy of mitochondrion biological_process
GO:0031307 integral component of mitochondrial outer membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04131 Membrane trafficking
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-041010-26 Predicted to be involved in autophagy of mitochondrion. Predicted to be integral component of mitochondrial outer membrane. Orthologous to human FUNDC2 (FUN14 domain containing 2).

Ensembl:

ensembl_id ENSDARG00000103740

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039096 False 2564 mRNA 0.33 5 44557791 44565862
TCONS_00039097 True 1175 mRNA 0.39 6 44558449 44565236

Neighbor

gene id symbol gene type direction distance location
XLOC_019874 brcc3 coding downstream 1380 44547450 ~ 44556411 (-)
XLOC_019873 zgc:136410 coding downstream 44898 44505613 ~ 44512893 (-)
XLOC_019872 NA coding downstream 400021 44157073 ~ 44157770 (-)
XLOC_019871 oatx coding downstream 453191 44091342 ~ 44104600 (-)
XLOC_019870 FO704810.1 coding downstream 476251 44041088 ~ 44081540 (-)
XLOC_019876 CU855912.1 coding upstream 2318 44568180 ~ 44568266 (-)
XLOC_019877 ammecr1 coding upstream 143418 44709280 ~ 44731865 (-)
XLOC_019878 kif4 coding upstream 169319 44735181 ~ 44772738 (-)
XLOC_019879 NA coding upstream 216406 44782268 ~ 44785206 (-)
XLOC_019880 rapgef6 coding upstream 475822 45041684 ~ 45086170 (-)
XLOC_019864 NA non-coding downstream 857511 43684862 ~ 43700280 (-)
XLOC_019853 AL954767.1 non-coding downstream 1164712 43390401 ~ 43393079 (-)
XLOC_019850 NA non-coding downstream 1231899 43325281 ~ 43325892 (-)
XLOC_019849 NA non-coding downstream 1305967 43246707 ~ 43251824 (-)
XLOC_019881 NA non-coding upstream 555500 45121362 ~ 45123821 (-)
XLOC_019882 NA non-coding upstream 598952 45164814 ~ 45188233 (-)
XLOC_019887 NA non-coding upstream 925365 45491227 ~ 45492856 (-)

Expression


Co-expression Network