G3262


Basic Information

Item Value
gene id G3262
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 4174876 ~ 4183734 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU4234
gtaacgtcgtatagtatccagtaacgtcgtatagtatccagtaacatcgtatagtatccagtaacgtcttatccagtaacatcgtatagtatccagtaacgtcttatccagtaacgtcgtatagtatccagtaacgtcgtatagtatccagtaacgtcgtatagtatccagtaacgtcgtatagtatccagtaacgtcttatccagtaacgtcgtatagtatccagtaacgtcgtatagtgtccagtaacatcgtatagtgtccagtaacgtcgtatagtatccagtaacgtcgtatagtatccagtaacgtcgtatagtatccagtaacatcgtatagtgtccagtaacatcgtatattatccagtaacgtcgtatagtatccagtaacatcgtatagtatccagtaacgtcgtatagtatccagtaacgtcgtatagtatccagtaacgtcgtatagtatccagtaacattgtatagtatccagtaacgtcttatccagtaacgtcgtatagtatccagtaacgtcttatccagtaacatcgtatagtatccagtaacgtcgtatagtatccagtaacatcgtatagtatccagtaacatcgtatagtatccagtaacgtcttatccagtaacatcgtatagtatccagtaacgtcttatccagtaacatcgtatagtatccagtaacgtcttatccagtaacatcgtacAGTATCCAGTAACATCTTATCCAGTtacatcgtatagtatccagtaacgtcttatccagtaacgtcgtatagtatccagtaacatcgtatagtatccagtaacatctTATCCAGTtacatcgtatagtatccagtaacgtcttatccagtaacatcgtatagtatccagtaacgtcttatccagtaacgtcgtatagtatccagtaacatcgtatagtatccagtaacatcttatccagtaacatcgtatagtatccagtaacatcttatccagtaacgtcgtatagtatccagtaacgtcttatccagtaacgtcgtatagtatccagtaacatcgtatagtatccagtaacatcttatccagtaacatcgtat
>TU4235
cgtatagtgtccagtaacatcgtatagtatccagtaacgtcttatccagtaacatcgtatagtgtccagtaacgtcttatccagtaacatcgtatagtatccagtaacgtcttatccagtaacgtcgtatagtatccagtaacatcgtatagtatccagtaacatcgtatagtatccagtaacatcgtatagtgtccagtaacatcgtatagtatccagtaacatcttatccagtaacatcgtatagtatccagtaacatcttatccagtaacgtcgtatagtatccagtaacgtcttatccagtaacgtcgtatagtatccagtaacatcgtatagtatccagtaacatcttatccagtaacatcgtat
>TU4233
catcgtatagtgtccagtaacatcgtatagtatccagtaacatcgtatagtatccagtaacatcgtatagtatccagtaacatcgtatagtatccagtaacgtcttatccagtaacatcgtatagtgtccagtaacgtcttatccagtaacatcgtatagtatccagtaacgtcttatccagtaacgtcgtatagtatccagtaacatcgtatagtatccagtaacatcgtatagtatccagtaacatcgtatagtgtccagtaacgtcttatccagtaacatcgtatagtatccagtaacgtcttatccagtaacatcgtatagtatccagtaacgtcttatccagtaacatcgtatagtatccagtaacgtcttatccagtaacatcgtatagtatccagtaacatcgtatagtatccagtaacgtcgtatagtatccagtaacgtcgtatagtatccagtaacgtcgtatagtatccagtaacgtcgtatagtatccagtaacatcgtatagtatccagtaacatcgtatagtatccagtaacgtcgtatagtatccagtaacgtcgtatagtatccagtaacgtcgtatagtatccagtaacatcgtatagtatccagtaacatcgtatagtatccagtaacatc
>TU4236
gtaacatcgtatagtatccagtaacatcgtatagtatccagtcacatcgtatagtatccagtcatgtcttatccagtaacgtcgtatagtatccagtaacgtcgtatagtatccagtaacatcgtatagtatccagtaacatcgtatagtgtccagtaacatcgtatagtgtccagtaacatcgtatagtgtCCAGTAACATCGaatagtatccagtaacatcgtattGTATCCAGTAACATCTTATCCAGTAACATcatatagtatccagtaacgtcgtatag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4234 False 1087 lncRNA 0.40 2 4174876 4183249
TU4235 False 370 lncRNA 0.53 3 4174876 4181827
TU4233 False 649 lncRNA 0.43 3 4176780 4182285
TU4236 True 284 lncRNA 0.40 2 4179501 4183734

Neighbor

gene id symbol gene type direction distance location
LOC110524598 LOC106574123 coding downstream 53343 4040460 ~ 4121533 (-)
LOC110524898 LOC107696768 coding downstream 136916 3874838 ~ 4037960 (-)
cep63 cep63 coding downstream 327231 3825233 ~ 3847645 (-)
amotl2a LOC106591579 coding downstream 408682 3752426 ~ 3766194 (-)
LOC118965007 NA coding downstream 454419 3708049 ~ 3720457 (-)
LOC110524992 sned1 coding upstream 77783 4261517 ~ 4415138 (-)
crocc2 LOC106574213 coding upstream 257708 4441442 ~ 4685402 (-)
klhl30 klhl30 coding upstream 506491 4690225 ~ 4703383 (-)
LOC110486761 kif1a coding upstream 572010 4751406 ~ 4921256 (-)
LOC110525986 LOC106574199 coding upstream 779628 4963362 ~ 4987214 (-)
G3253 NA non-coding downstream 20316 4152619 ~ 4154560 (-)
G3148 NA non-coding downstream 58317 4116230 ~ 4116559 (-)
G3124 NA non-coding downstream 152167 4020652 ~ 4022709 (-)
G3106 NA non-coding downstream 213726 3960892 ~ 3961150 (-)
G3083 NA non-coding downstream 268178 3903927 ~ 3906698 (-)
G3266 NA non-coding upstream 121 4183855 ~ 4185475 (-)
G3298 NA non-coding upstream 93899 4277633 ~ 4277839 (-)
G3299 NA non-coding upstream 94532 4278266 ~ 4279193 (-)
G3300 NA non-coding upstream 96617 4280351 ~ 4280769 (-)
G3320 NA non-coding upstream 151889 4335623 ~ 4338807 (-)
G3152 NA other downstream 50181 4124276 ~ 4124695 (-)
smx5 LSM2 other downstream 533983 3632307 ~ 3640949 (-)
G2772 NA other downstream 730777 3442338 ~ 3444099 (-)
G2749 NA other downstream 786661 3385306 ~ 3388215 (-)
G3291 NA other upstream 69453 4253187 ~ 4263613 (-)
G3862 NA other upstream 764949 4948683 ~ 4957072 (-)
G4804 NA other upstream 1833088 6016822 ~ 6018076 (-)
mfsd8l1 LOC106574194 other upstream 2361352 6537498 ~ 6551510 (-)

Expression


Co-expression Network