XLOC_019877 (ammecr1)


Basic Information

Item Value
gene id XLOC_019877
gene name ammecr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 44709280 ~ 44731865 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039099
CTGACGGTGATGGGTCGGAAGCGGTGTGTTGGTGCAGATTGTTCGAAGATGGCGGCCGGGTGCTGCGGGGTGAAGAAGCAAAAGTTGTCGGGATCCCCTGGCGCGGGGGGTCCCGGCGGGGCGGGAAGCGGGGTAGCCGGGACCGGACATTGTGGATCGGAACTGGGGATTGGGTCGTCGTCGACTGTCGTGGCCGGGAGCGTGAATCGAGTGAACGGCCTGGGGGGTCCGGGGGGTAGCGGTAGCAGCGGCGGTAACAACACCAACGCGCTGTCCGCGACTCCCGGAGGTTACAACTCCACCGGCCTCTCCCCGACTCTCAGCCCCGGCTCTGGAGCCAGGAAAATGGTGGTTTCGGCGGAGATGTGTTGCTTTTGCTTCGACGTGCTTTATTGCCATCTATACGGATACCAGCCTCCTCGAACACCCAGGTTTACAAACGACCCCTATCCACTGTTTGTCACTTGGAAAATCGGCCGGGACAAGCGGTTAAGGGGTTGTATAGGTACATTTTCTGCCATGAACCTGCACTCAGGACTCAGGGAGTACACCCTTACCAGTGCCCTTAAAGACAGTCGCTTTCCCCCCATGACGAGGGACGAGCTGCCGCGCCTCTTCTGCTCAGTGTCTCTGCTCACCAACTTTGAGGATGTTGGTGATTACCTAGACTGGGAGGTGGGTGTTCACGGCATTAGGAtagaattttttaatgaaaaaggaTCAAAGCGCACCGCCACCTACCTGCCAGAGGTTGCGAAGGAGCAAGGATGGGACCACATTCAGACCATAGATTCCTTACTTCGAAAGGGAGGATACAAAGCTCCCATCACAAATGACTTCAGGAAGACTATTAAATTGACCAGGTACCGTAGTGAGAAGATGACGATGAGCTACGCAGAATACATCGCCCACCGCCAGCACCATCACTACCAGAACGGCATCGGGCACCCGCTCCCTCCCTACAACCATTATTCCTGACAGCGAGCCGCATGACCAGTCCCTGGAGCTCTCGGCGGACATCTTCCCCGGAGAGCCGGCCCCGTCCTGGTCTAGCTATCTCTACTACTGTACCATTTTATGATGATAGTTTCCGCTGCCGTGTCTTCAGTCTGACCGGGGCATGGCAGCGGGTGCAAAATCAGCATTAGGTGATCGATTATAAAcccagaagaaaacaaaaaattcatttatttcctcatttTTAATCCTttgtattaatttagtttttgcaGCATATATATATGACTATATATATCTCGATCGaccccttttcttttctttaaaaaaacaaacaaaaaaaagcaaataaagcaagtttattttaa

Function

symbol description
ammecr1 Human ortholog(s) of this gene implicated in midface hypoplasia, hearing impairment, elliptocytosis, and nephrocalcinosis. Orthologous to several human genes including AMMECR1 (AMMECR nuclear protein 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1533 Human ortholog(s) of this gene implicated in midface hypoplasia, hearing impairment, elliptocytosis, and nephrocalcinosis. Orthologous to several human genes including AMMECR1 (AMMECR nuclear protein 1).

Ensembl:

ensembl_id ENSDARG00000012892

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039099 True 1325 mRNA 0.52 6 44709280 44731865

Neighbor

gene id symbol gene type direction distance location
XLOC_019876 CU855912.1 coding downstream 141014 44568180 ~ 44568266 (-)
XLOC_019875 fundc2 coding downstream 143418 44557791 ~ 44565862 (-)
XLOC_019874 brcc3 coding downstream 152869 44547450 ~ 44556411 (-)
XLOC_019873 zgc:136410 coding downstream 196387 44505613 ~ 44512893 (-)
XLOC_019872 NA coding downstream 551510 44157073 ~ 44157770 (-)
XLOC_019878 kif4 coding upstream 3316 44735181 ~ 44772738 (-)
XLOC_019879 NA coding upstream 50403 44782268 ~ 44785206 (-)
XLOC_019880 rapgef6 coding upstream 309819 45041684 ~ 45086170 (-)
XLOC_019881 NA coding upstream 389497 45121362 ~ 45123821 (-)
XLOC_019882 NA coding upstream 432949 45164814 ~ 45188233 (-)
XLOC_019864 NA non-coding downstream 1009000 43684862 ~ 43700280 (-)
XLOC_019853 AL954767.1 non-coding downstream 1316201 43390401 ~ 43393079 (-)
XLOC_019850 NA non-coding downstream 1383388 43325281 ~ 43325892 (-)
XLOC_019887 NA non-coding upstream 759362 45491227 ~ 45492856 (-)
XLOC_019891 NA non-coding upstream 956070 45687935 ~ 45709745 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000040_01760148_01802721 AMMECR1 coding CI01000040 null 1760148 ~ 1803002 (+)
bowfin (Amia calva) AMCG00021148 ammecr1,LOC108429437,LOC107713167,LOC107715796 coding CM030130.1 CM030130.1 7026401 ~ 7040851 (+)