G3375


Basic Information

Item Value
gene id G3375
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 4482723 ~ 4489920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU4364
gcATCAAAATATTCAGAAATGTATCATTCTTGCGCAATTCATATTTATGGGCCACAGTGAGGTTTTACTTTCATTATTTGTATCTAACGTTAGTGTGTAGACTAAACCTCAACTATAGAGACTCAATGTATCTGGTCTAACTATATTGagcagtagtctaatgttatagaacagaggaccagaacagtagtctaatgttttagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctgttatagaagagaggaccagaacagtagtctaatgttatagaagagagggccagaacagtagtcttctgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacattagtctaatgttatagaagagaggaccagaacagtagtctaatgttacagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctgatatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctgttatagaagagaggaccagaacagtagtctgttgtagaagagatgaccagaacagtagtctgttatagaagagaggaccagaacagtagtctgttatagaagagaggaccagaacagtagtctgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtct
>TU4368
gcATCAAAATATTCAGAAATGTATCATTCTTGCGCAATTCATATTTATGGGCCACAGTGAGGTTTTACTTTCATTATTTGTATCTAACGTTAGTGTGTAGACTAAACCTCAACTATAGAGACTCAATGTATCTGGTCTAACTATATTGagcagtagtctaatgttatagaacagaggaccagaacagtagtctaatgttttagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctgttatagaagagaggaccagaacagtagtctaatgttatagaagagagggccagaacagtagtctgatatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctgttatagaagagaggaccagaacagtagtctgttgtagaagagatgaccagaacagtagtctaatgttctagaagagaggaccagaacagtggtctgatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctgttatagaagagaggaccagaacagtagtctaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4364 False 784 lncRNA 0.56 4 4482723 4489920
TU4368 True 688 lncRNA 0.51 2 4482723 4487440

Neighbor

gene id symbol gene type direction distance location
im:7152348 LOC106573986 coding upstream 629714 3848517 ~ 3853009 (+)
trnap-ugg NA coding upstream 634764 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 635029 3847623 ~ 3847694 (+)
LOC118965227 NA coding upstream 656858 3822517 ~ 3826226 (+)
bcl6aa LOC106574104 coding upstream 858141 3602663 ~ 3624582 (+)
agxta LOC105025628 coding downstream 458807 4948727 ~ 4957086 (+)
LOC110526525 LOC106613452 coding downstream 1174251 5664171 ~ 5767693 (+)
LOC110527749 armc9 coding downstream 2069147 6559067 ~ 6651795 (+)
b3gnt7 b3gnt7 coding downstream 2194179 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 2538630 7028550 ~ 7056518 (+)
G3354 NA non-coding upstream 29140 4444881 ~ 4453583 (+)
G3357 NA non-coding upstream 30946 4450860 ~ 4451777 (+)
G3232 NA non-coding upstream 47239 4357439 ~ 4435484 (+)
G3211 NA non-coding upstream 191864 4289767 ~ 4290859 (+)
G3205 NA non-coding upstream 200307 4281407 ~ 4282416 (+)
G3377 NA non-coding downstream 72 4489992 ~ 4498191 (+)
G3416 NA non-coding downstream 98736 4588656 ~ 4626800 (+)
G3417 NA non-coding downstream 102765 4592685 ~ 4593589 (+)
G3427 NA non-coding downstream 121670 4611590 ~ 4612779 (+)
G3521 klhl30 non-coding downstream 202328 4692248 ~ 4695358 (+)
G3351 NA other upstream 40815 4439966 ~ 4441908 (+)
G3234 NA other upstream 83279 4398904 ~ 4399444 (+)
G3176 NA other upstream 304650 4175323 ~ 4178073 (+)
G2464 NA other upstream 979142 3503269 ~ 3503581 (+)
G2343 NA other upstream 1266489 3214697 ~ 3216234 (+)
G3596 NA other downstream 364601 4854521 ~ 4856248 (+)
G3597 NA other downstream 366605 4856525 ~ 4857065 (+)
G5276 NA other downstream 2027562 6517482 ~ 6518189 (+)
G5581 NA other downstream 2321074 6810994 ~ 6811621 (+)
G6434 NA other downstream 3235126 7725046 ~ 7725609 (+)

Expression


Co-expression Network