G3540


Basic Information

Item Value
gene id G3540
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 4748358 ~ 4816025 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU4618
TGTTGTGTTTtggtagtggtagtgttgtggtagtgttgtggtagtgtagtggtagtgttgtggtagtgttgtggtagtgtagtggtagtgtagtggtagtgtagtggtagtggtagtgttgtggtagtgttgtggtagtgtagtggtagtgtagtggtagtgtagtggtagtgttgtggtagtgttgtggtagtgttgtggtagtgtagtggtagtgttgtggtagtgtagtggtagtgtagtggtagtgttgtggtagtgttgtggtagtgttgtggtagtgtagtggtagtgtagtggtactgttgtggtagtgttgtggtagtgttgtgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4618 True 333 lncRNA 0.44 2 4748358 4816025

Neighbor

gene id symbol gene type direction distance location
im:7152348 LOC106573986 coding upstream 895349 3848517 ~ 3853009 (+)
trnap-ugg NA coding upstream 900399 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 900664 3847623 ~ 3847694 (+)
LOC118965227 NA coding upstream 922493 3822517 ~ 3826226 (+)
bcl6aa LOC106574104 coding upstream 1123776 3602663 ~ 3624582 (+)
agxta LOC105025628 coding downstream 132702 4948727 ~ 4957086 (+)
LOC110526525 LOC106613452 coding downstream 848146 5664171 ~ 5767693 (+)
LOC110527749 armc9 coding downstream 1743042 6559067 ~ 6651795 (+)
b3gnt7 b3gnt7 coding downstream 1868074 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 2212525 7028550 ~ 7056518 (+)
G3522 NA non-coding upstream 48304 4695588 ~ 4700054 (+)
G3521 klhl30 non-coding upstream 53000 4692248 ~ 4695358 (+)
G3416 NA non-coding upstream 121558 4588656 ~ 4626800 (+)
G3427 NA non-coding upstream 135579 4611590 ~ 4612779 (+)
G3417 NA non-coding upstream 154769 4592685 ~ 4593589 (+)
G3576 NA non-coding downstream 6041 4822066 ~ 4823158 (+)
G3580 NA non-coding downstream 11915 4827940 ~ 4828266 (+)
G3601 LOC106573836 non-coding downstream 53946 4869971 ~ 4871942 (+)
G3605 NA non-coding downstream 67969 4883994 ~ 4884355 (+)
G3617 NA non-coding downstream 93106 4909131 ~ 4910563 (+)
G3351 NA other upstream 306450 4439966 ~ 4441908 (+)
G3234 NA other upstream 348914 4398904 ~ 4399444 (+)
G3176 NA other upstream 570285 4175323 ~ 4178073 (+)
G2464 NA other upstream 1244777 3503269 ~ 3503581 (+)
G2343 NA other upstream 1532124 3214697 ~ 3216234 (+)
G3596 NA other downstream 38496 4854521 ~ 4856248 (+)
G3597 NA other downstream 40500 4856525 ~ 4857065 (+)
G5276 NA other downstream 1701457 6517482 ~ 6518189 (+)
G5581 NA other downstream 1994969 6810994 ~ 6811621 (+)
G6434 NA other downstream 2909021 7725046 ~ 7725609 (+)

Expression


Co-expression Network